Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 3521.5 1925 100.0
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2888.2 1850 82.4
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2610.5 1938 75.9
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2527.3 1834 75.0
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2498.0 1955 72.9
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2273.4 1958 67.5
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2239.2 1931 66.6
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2228.8 1836 66.9
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2227.6 1833 67.3
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2216.8 1821 67.3
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2199.5 1977 65.3
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2196.4 1937 65.5
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2180.2 1835 66.5
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2180.2 1835 66.4
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2170.2 1823 66.5
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2149.4 1937 63.0
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2143.6 1823 65.3
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2140.5 1931 64.5
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2128.2 1928 64.8
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2126.3 1929 64.9
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2114.7 1811 64.5
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2108.2 1805 64.8
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2107.8 1948 64.8
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2107.0 1964 63.3
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2103.6 1976 62.7
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2102.4 1965 63.5
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2102.0 1865 63.2
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2097.0 1930 64.5
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2095.1 1866 63.3
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2091.2 1834 64.0
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2088.9 1902 62.7
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2088.2 1801 64.4
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2087.4 1822 64.0
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2086.2 1788 64.8
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2086.2 1834 64.1
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2085.5 1950 63.5
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2075.8 1939 64.5
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2075.8 1826 64.3
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2074.3 1921 64.1
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2072.7 1936 64.5
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2072.0 1931 63.5
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2066.2 1870 62.5
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2065.8 1820 63.8
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2055.4 1832 62.7
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2052.7 1927 61.5
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2052.7 1828 62.2
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2050.8 1846 63.3
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2049.2 1930 60.7
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2045.8 1923 62.8
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2045.8 1885 64.3
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2044.6 1828 64.3
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2044.2 1819 64.2
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2043.1 1952 61.5
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2042.7 1962 62.2
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2042.3 1822 62.1
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2039.2 1923 62.7
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2036.2 1929 62.2
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2033.5 1896 63.0
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2027.7 1815 63.5
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2025.4 1802 63.4
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2025.0 1817 63.3
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2024.6 1824 61.5
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2021.5 1846 61.3
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2009.6 1788 62.6
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2003.4 1826 63.0
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2002.3 1924 62.7
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2002.3 1965 60.7
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1998.4 1978 61.1
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1995.3 1815 61.7
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1986.5 1811 61.6
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1975.7 1923 61.3
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1968.4 1840 61.2
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1951.8 1939 59.4
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1934.1 1864 60.1
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1928.3 1813 61.0
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1924.8 1937 61.0
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1911.3 1853 59.0
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1902.1 1845 58.9
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1893.2 1856 58.6
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1889.0 1925 59.3
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1855.9 1676 62.1
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1823.1 1840 57.4
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1820.8 1838 57.2
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1815.8 1991 56.7
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1812.3 1891 56.8
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1766.1 1855 55.3
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1759.2 1711 59.1
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1758.8 1844 55.1
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1754.6 1884 55.8
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1750.3 1884 53.8
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1734.9 1867 55.6
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1734.2 1847 55.7
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1712.6 1869 54.9
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1703.7 1884 53.9
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1703.3 1861 54.2
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1701.4 1864 54.2
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1698.7 1885 53.6
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1695.6 1889 54.8
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1695.6 1861 54.3
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1695.2 1870 53.5
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1691.8 1883 54.0
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1687.9 1870 53.3
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1681.4 1868 53.4
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1681.4 1868 53.4
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1631.7 1864 52.9
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1623.2 1833 51.8
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1604.0 1872 52.4
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1578.5 1848 50.9
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1495.7 1241 69.5
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1453.7 1235 65.0
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1452.6 1943 47.5
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1410.2 1938 48.6
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1407.5 1866 47.3
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1406.0 1884 46.8
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1406.0 1884 46.8
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1402.1 1230 67.1
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1361.7 1333 57.2
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1355.1 1513 56.1
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1251.1 998 68.2
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1202.2 1486 53.0
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1178.3 1773 43.6
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 0.0e+00 1119.8 1455 51.9
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1119.4 923 66.6
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1078.5 1032 63.6
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 2.3e-298 1030.0 1336 51.3
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 3.4e-286 989.6 864 64.7
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 7.9e-283 978.4 1842 38.3
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.7e-280 970.7 1630 42.5
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 4.1e-279 966.1 740 68.9
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 2.4e-239 833.9 840 57.1
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 7.3e-236 822.4 808 58.5
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.5e-196 691.0 605 67.3
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 3.0e-181 641.0 650 54.3
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.7e-179 634.0 651 55.0
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 3.9e-173 614.0 716 51.0
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 3.3e-164 584.3 502 62.7
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.8e-154 552.0 617 51.1
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.9e-153 547.0 339 76.1
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.0e-140 505.4 543 59.5
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.7e-131 474.6 543 57.3
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 2.7e-113 415.2 1231 28.3
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 5.2e-109 401.0 460 51.3
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 2.2e-99 369.0 350 57.7
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.3e-87 328.6 640 37.3
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 2.7e-81 308.9 2075 22.9
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 6.0e-81 307.8 475 41.7
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.4e-74 286.6 839 31.9
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 6.7e-72 277.7 444 41.2
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 6.9e-69 267.7 462 41.8
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.5e-63 250.0 223 67.7
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 6.3e-62 244.6 160 75.6
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 4.4e-55 221.9 193 68.4
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 2.9e-51 209.1 266 47.4
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 7.7e-44 184.5 232 53.9
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 7.5e-31 141.4 76 85.5
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.8e-21 110.2 182 45.1
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 1.3e-19 104.0 163 39.9
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 1.1e-18 100.9 82 59.8
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 2.0e-15 90.1 60 68.3
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.3e-11 76.6 52 65.4
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.9e-10 73.6 63 57.1
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 2.5e-10 73.2 78 50.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 3.6e-09 69.3 33 81.8
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.4e-08 67.4 52 53.8
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 2.2e-06 60.1 43 65.1
Ah.04g156720 Amaranthus hybridus HOM05D002037 ORTHO05D005261 8.3e-06 58.2 39 79.5


User provided reference genes

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