Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 3.4e-250 867.8 439 100.0
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 2.7e-170 602.4 396 80.1
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 2.3e-169 599.4 396 79.8
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 3.4e-165 585.5 426 74.9
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.9e-163 579.7 398 77.1
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 1.3e-161 573.5 399 75.9
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 7.4e-160 567.8 401 76.1
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.7e-159 565.5 392 75.0
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 4.8e-159 565.1 399 75.2
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 8.2e-159 564.3 396 74.5
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 9.0e-158 560.8 392 77.0
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 5.8e-157 558.1 372 78.8
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.7e-156 556.6 389 74.6
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 4.2e-155 552.0 392 73.5
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 9.3e-155 550.8 418 70.3
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 6.1e-154 548.1 397 72.5
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.8e-153 546.6 392 72.7
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 3.0e-153 545.8 400 70.8
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.5e-152 543.5 371 77.1
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 3.3e-152 542.3 373 77.2
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.3e-151 540.4 371 76.5
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.6e-151 540.0 371 76.5
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 2.8e-151 539.3 389 74.6
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 2.8e-151 539.3 339 81.1
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 3.7e-151 538.9 380 74.7
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 6.3e-151 538.1 346 78.9
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 6.3e-151 538.1 346 78.9
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.4e-150 537.0 399 70.9
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.4e-150 537.0 343 79.9
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.4e-150 537.0 375 74.1
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 2.4e-150 536.2 383 72.8
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 3.1e-150 535.8 375 73.9
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 4.1e-150 535.4 396 71.7
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 4.1e-150 535.4 371 75.5
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 5.3e-150 535.0 378 73.5
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 5.3e-150 535.0 375 74.1
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 6.9e-150 534.6 383 74.2
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 6.9e-150 534.6 374 74.6
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.5e-149 533.5 374 75.1
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 2.0e-149 533.1 399 70.4
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 2.0e-149 533.1 399 70.9
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.0e-149 533.1 369 76.2
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 2.0e-149 533.1 392 71.9
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.0e-149 533.1 394 69.5
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.0e-149 533.1 394 69.5
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.5e-149 531.9 399 70.2
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 4.5e-149 531.9 396 71.2
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 5.9e-149 531.6 396 70.7
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.0e-148 530.8 372 76.1
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.3e-148 530.4 384 73.4
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 2.2e-148 529.6 371 76.3
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 2.9e-148 529.3 371 73.9
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 2.9e-148 529.3 371 75.7
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 5.0e-148 528.5 343 78.4
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 6.5e-148 528.1 399 69.9
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 8.5e-148 527.7 370 74.6
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.1e-147 527.3 377 74.5
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.9e-147 526.6 343 78.4
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 3.2e-147 525.8 349 77.7
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 3.2e-147 525.8 349 77.9
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 4.2e-147 525.4 400 70.2
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.2e-147 525.4 388 71.1
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 4.2e-147 525.4 435 65.5
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 5.5e-147 525.0 399 70.4
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 5.5e-147 525.0 392 71.2
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 5.5e-147 525.0 371 73.6
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 9.4e-147 524.2 388 70.4
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 9.4e-147 524.2 343 77.8
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.2e-146 523.9 400 70.2
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.2e-146 523.9 375 72.0
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.6e-146 523.5 399 69.9
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.6e-146 523.5 399 69.9
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 2.1e-146 523.1 406 67.5
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 2.1e-146 523.1 336 78.6
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 3.6e-146 522.3 393 70.7
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 3.6e-146 522.3 354 76.3
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 3.6e-146 522.3 375 72.5
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.6e-146 522.3 370 72.7
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 6.1e-146 521.5 349 77.7
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 6.1e-146 521.5 371 74.7
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 6.1e-146 521.5 406 68.0
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 1.0e-145 520.8 401 69.3
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.0e-145 520.8 384 72.4
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.4e-145 520.4 387 71.3
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.8e-145 520.0 339 78.2
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 3.0e-145 519.2 362 73.2
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 3.9e-145 518.8 351 75.8
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 5.1e-145 518.5 382 71.5
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 5.1e-145 518.5 345 78.3
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 6.7e-145 518.1 336 78.3
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.5e-144 516.9 370 72.4
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 2.0e-144 516.5 369 73.4
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 2.0e-144 516.5 362 73.2
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.0e-144 516.5 362 73.2
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 2.5e-144 516.2 371 74.7
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 2.5e-144 516.2 371 74.7
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 2.5e-144 516.2 383 71.8
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 3.3e-144 515.8 397 69.8
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 5.7e-144 515.0 398 70.1
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 7.4e-144 514.6 369 73.4
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 7.4e-144 514.6 369 73.4
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.4e-144 514.6 388 70.1
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 7.4e-144 514.6 336 76.8
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.3e-143 513.8 353 73.1
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.7e-143 513.5 357 73.4
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 2.2e-143 513.1 404 68.8
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.2e-143 513.1 370 71.6
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 2.2e-143 513.1 421 66.3
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 2.8e-143 512.7 393 69.5
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 3.7e-143 512.3 338 76.9
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 4.8e-143 511.9 351 73.8
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 4.8e-143 511.9 370 71.9
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.3e-143 511.5 358 73.2
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.3e-143 511.5 305 81.6
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.3e-143 511.5 305 81.6
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 8.2e-143 511.1 359 73.5
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 8.2e-143 511.1 485 59.6
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 1.8e-142 510.0 325 80.0
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 1.8e-142 510.0 364 72.3
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 2.4e-142 509.6 354 74.9
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.1e-142 509.2 299 82.6
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 4.1e-142 508.8 370 71.1
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 4.1e-142 508.8 348 74.4
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.2e-141 507.3 284 88.7
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 2.6e-141 506.1 379 69.1
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.9e-141 505.0 370 70.5
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 7.7e-141 504.6 367 70.8
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.7e-140 503.4 348 73.3
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.7e-140 503.4 379 68.9
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.0e-140 501.9 369 72.9
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 5.7e-136 488.4 400 67.2
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.7e-136 488.4 284 85.2
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.7e-135 485.7 332 73.5
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 1.1e-134 484.2 349 71.6
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.7e-133 478.0 331 73.4
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 1.0e-132 477.6 362 67.1
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.7e-132 476.9 406 63.8
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 8.5e-132 474.6 362 69.1
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 8.5e-132 474.6 362 68.2
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.2e-130 470.7 331 72.2
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 8.0e-130 468.0 305 75.1
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.4e-129 467.2 300 76.0
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 6.7e-129 464.9 351 68.1
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 2.0e-128 463.4 397 64.7
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 9.7e-128 461.1 338 71.6
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 7.7e-125 451.4 349 67.3
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 2.2e-124 449.9 325 71.7
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.8e-113 413.7 326 65.3
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.4e-110 404.1 290 74.1
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.0e-109 400.2 329 63.5
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 2.8e-106 389.8 289 74.4
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 2.3e-100 370.2 276 71.7
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.4e-97 360.9 289 63.3
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 4.7e-90 335.9 237 72.6
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 9.9e-72 275.0 291 55.3
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 1.3e-66 258.1 232 59.5
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 1.6e-66 257.7 210 69.0
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 1.5e-64 251.1 325 48.0
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 3.5e-61 240.0 167 71.9
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 5.3e-49 199.5 113 84.1
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 7.9e-45 185.7 113 79.6
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 7.2e-38 162.5 184 55.4
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 7.2e-38 162.5 184 55.4
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 7.2e-38 162.5 184 55.4
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 2.4e-33 147.5 101 70.3
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 1.5e-32 144.8 321 33.0
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 3.4e-32 143.7 98 70.4
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 4.5e-32 143.3 99 70.7
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 4.5e-32 143.3 99 70.7
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 2.9e-31 140.6 99 69.7
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 8.5e-31 139.0 103 67.0
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 2.7e-29 134.0 104 62.5
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 3.9e-28 130.2 103 62.1
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 2.6e-19 100.9 64 75.0
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 5.3e-17 93.2 67 73.1
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.6e-16 91.7 49 89.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 5.9e-16 89.7 61 78.7
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 1.3e-07 62.0 35 74.3
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 1.1e-06 58.9 37 67.6


User provided reference genes

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