Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold177G39450 Striga asiatica HOM05D004190 ORTHO05D004692 5.5e-114 414.5 232 100.0
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 5.4e-53 211.8 245 59.6
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 4.2e-37 159.1 244 45.5
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 1.2e-36 157.5 207 48.8
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 2.9e-30 136.3 235 43.4
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.1e-16 91.3 177 37.3
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.4e-16 90.9 177 38.4
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 1.4e-16 90.9 205 37.6
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 2.4e-16 90.1 197 35.0
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 2.0e-15 87.0 199 35.7
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 3.4e-15 86.3 111 47.7
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 1.3e-14 84.3 185 40.5
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 2.9e-14 83.2 183 39.9
Oeu002349.1 Olea europaea HOM05D004190 ORTHO05D004692 5.0e-14 82.4 129 41.9
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.1e-13 81.3 204 38.2
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 1.1e-13 81.3 118 39.8
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 1.6e-12 77.4 204 35.3
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 1.6e-12 77.4 176 34.1
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 2.1e-12 77.0 183 36.1
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 4.7e-12 75.9 209 34.4
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 4.7e-12 75.9 183 31.7
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 4.7e-12 75.9 143 37.1
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 4.7e-12 75.9 166 34.9
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 1.8e-11 73.9 173 35.8
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 1.8e-11 73.9 175 36.6
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.8e-11 73.9 185 34.6
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.8e-11 73.9 185 34.6
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 2.3e-11 73.6 170 34.7
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 3.0e-11 73.2 188 31.4
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 3.0e-11 73.2 185 31.9
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 5.1e-11 72.4 168 33.9
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.1e-11 72.4 185 34.6
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 8.8e-11 71.6 208 31.7
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 8.8e-11 71.6 214 29.4
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 8.8e-11 71.6 204 30.9
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 1.5e-10 70.9 235 29.8
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 1.5e-10 70.9 185 35.1
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 2.0e-10 70.5 227 30.0
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 2.0e-10 70.5 183 31.1
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.6e-10 70.1 169 32.0
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.6e-10 70.1 169 31.4
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.6e-10 70.1 169 31.4
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 3.3e-10 69.7 192 32.8
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 4.4e-10 69.3 193 33.2
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 7.4e-10 68.6 183 33.3
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 1.3e-09 67.8 101 42.6
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 1.3e-09 67.8 125 35.2
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 1.7e-09 67.4 207 33.3
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.7e-09 67.4 181 33.1
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 2.2e-09 67.0 183 31.7
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.8e-09 66.6 176 31.2
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 3.7e-09 66.2 165 31.5
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 3.7e-09 66.2 177 31.6
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 6.3e-09 65.5 165 32.1
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 6.3e-09 65.5 223 31.8
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 6.3e-09 65.5 148 35.1
PSO339G5001 Papaver somniferum HOM05D066734 ORTHO05D004692 1.8e-08 63.9 132 34.8
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 2.4e-08 63.5 171 32.2
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 2.4e-08 63.5 141 34.0
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 3.1e-08 63.2 143 33.6
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 7.0e-08 62.0 180 31.7
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 9.1e-08 61.6 238 29.0
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.2e-07 61.2 102 38.2
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 1.5e-07 60.8 199 29.1
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 2.0e-07 60.5 176 31.2
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 2.0e-07 60.5 118 32.2
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 2.6e-07 60.1 125 38.4
PSO384G2347 Papaver somniferum HOM05D066734 ORTHO05D004692 2.6e-07 60.1 149 32.9
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.6e-07 60.1 172 33.7
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 3.4e-07 59.7 103 35.9
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 3.4e-07 59.7 169 30.2
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 3.4e-07 59.7 168 29.8
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 5.9e-07 58.9 89 38.2
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 7.7e-07 58.5 243 30.9
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 1.0e-06 58.2 191 30.9
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 1.0e-06 58.2 191 30.9
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 1.0e-06 58.2 192 30.7
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.0e-06 58.2 161 29.2
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 1.7e-06 57.4 193 30.6
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 1.7e-06 57.4 92 40.2
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.7e-06 57.4 193 29.0
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 2.2e-06 57.0 113 35.4
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 2.2e-06 57.0 122 33.6
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 2.2e-06 57.0 148 29.7
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 2.2e-06 57.0 118 36.4
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 3.8e-06 56.2 101 37.6
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 3.8e-06 56.2 97 39.2
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 5.0e-06 55.8 181 29.8
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 5.0e-06 55.8 190 27.9
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 6.5e-06 55.5 98 35.7
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 6.5e-06 55.5 88 45.5
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 6.5e-06 55.5 88 45.5
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 6.5e-06 55.5 162 31.5
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 8.5e-06 55.1 152 28.3
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 8.5e-06 55.1 104 32.7
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 8.5e-06 55.1 197 29.9
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 8.5e-06 55.1 134 30.6
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 8.5e-06 55.1 171 25.7
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 8.5e-06 55.1 105 35.2


User provided reference genes

Program Settings