Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 7.2e-164 580.5 289 100.0
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.3e-99 367.1 191 94.2
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 2.8e-99 365.9 191 93.7
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 4.8e-99 365.2 191 93.2
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 4.0e-98 362.1 191 92.1
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 5.3e-98 361.7 191 93.2
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 5.3e-98 361.7 191 91.6
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 5.3e-98 361.7 191 91.1
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 6.9e-98 361.3 191 91.6
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 4.5e-97 358.6 189 92.1
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.0e-96 357.5 192 91.7
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 3.8e-96 355.5 191 90.6
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 3.8e-96 355.5 191 88.5
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.9e-96 355.1 189 91.0
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 8.4e-96 354.4 191 89.5
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 8.4e-96 354.4 191 89.5
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 1.1e-95 354.0 192 90.6
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 1.1e-95 354.0 191 89.0
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.1e-95 354.0 191 90.1
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.4e-95 353.6 189 90.5
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.4e-95 353.6 191 89.0
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.9e-95 353.2 189 89.9
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 2.5e-95 352.8 189 89.9
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 3.2e-95 352.4 191 88.0
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 4.2e-95 352.1 191 89.0
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 4.2e-95 352.1 191 89.5
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 5.5e-95 351.7 191 89.5
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 5.5e-95 351.7 191 88.5
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 9.3e-95 350.9 191 88.0
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 9.3e-95 350.9 189 88.9
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 9.3e-95 350.9 189 88.9
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 1.6e-94 350.1 191 88.0
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.6e-94 350.1 191 88.0
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 2.1e-94 349.7 191 87.4
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 2.1e-94 349.7 189 89.4
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 2.7e-94 349.4 191 86.9
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 3.5e-94 349.0 189 89.9
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.0e-93 347.4 191 87.4
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 1.0e-93 347.4 189 88.9
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 1.3e-93 347.1 191 86.9
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.8e-93 346.7 191 86.9
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 2.3e-93 346.3 191 87.4
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 3.0e-93 345.9 191 87.4
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 3.0e-93 345.9 191 86.9
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 3.0e-93 345.9 196 85.2
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 5.1e-93 345.1 189 88.9
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 5.1e-93 345.1 191 86.9
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 5.1e-93 345.1 191 88.0
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 6.7e-93 344.7 191 86.9
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 1.9e-92 343.2 191 85.9
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.9e-92 343.2 191 86.9
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 4.3e-92 342.0 206 81.6
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 4.3e-92 342.0 191 87.4
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 7.4e-92 341.3 191 85.3
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 7.4e-92 341.3 191 84.8
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 9.7e-92 340.9 191 85.3
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 9.7e-92 340.9 222 78.4
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 1.6e-91 340.1 191 85.3
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 2.2e-91 339.7 191 85.9
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 2.2e-91 339.7 191 84.8
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.8e-91 339.3 189 88.4
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 2.8e-91 339.3 191 85.3
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 4.8e-91 338.6 191 84.8
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 6.3e-91 338.2 191 85.3
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 6.3e-91 338.2 205 82.4
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 8.2e-91 337.8 191 84.3
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 8.2e-91 337.8 191 84.3
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.1e-90 337.4 191 84.8
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 1.1e-90 337.4 191 84.3
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.8e-90 336.7 191 83.8
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 3.1e-90 335.9 191 83.8
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 4.1e-90 335.5 192 83.3
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 4.1e-90 335.5 191 84.3
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 5.3e-90 335.1 189 85.7
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 6.9e-90 334.7 191 83.2
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 9.0e-90 334.3 191 86.4
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 1.2e-89 334.0 191 84.3
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 1.5e-89 333.6 191 83.2
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.5e-89 333.6 191 83.2
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 2.0e-89 333.2 189 85.2
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 4.5e-89 332.0 191 82.7
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 4.5e-89 332.0 189 84.1
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 5.9e-89 331.6 191 82.7
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 5.9e-89 331.6 191 82.7
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 7.7e-89 331.3 191 81.7
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 1.0e-88 330.9 191 82.2
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 1.0e-88 330.9 188 81.9
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.3e-88 330.5 189 84.1
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.1e-87 327.4 191 83.2
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 1.1e-87 327.4 188 82.4
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.1e-87 327.4 189 83.1
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.1e-87 327.4 191 81.7
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.1e-87 327.4 191 82.2
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.4e-87 327.0 189 82.0
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 1.4e-87 327.0 191 82.2
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 2.5e-87 326.2 189 81.5
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 7.2e-87 324.7 191 80.6
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 7.2e-87 324.7 191 80.1
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 1.2e-86 323.9 190 82.6
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.6e-86 323.6 191 79.6
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.6e-86 323.6 189 81.0
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 2.7e-86 322.8 191 80.1
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 3.0e-85 319.3 190 81.1
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 3.9e-85 318.9 191 79.1
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 6.7e-85 318.2 191 79.6
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 9.7e-84 314.3 191 78.5
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.3e-83 313.9 230 72.2
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.7e-83 313.5 207 74.4
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 3.7e-83 312.4 167 89.8
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.8e-83 312.0 209 73.2
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.1e-82 310.8 191 78.5
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.1e-82 310.8 191 78.5
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.8e-82 310.1 189 78.3
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 1.5e-81 307.0 191 77.5
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 1.1e-79 300.8 189 75.7
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.6e-78 297.0 194 72.7
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 2.1e-78 296.6 191 78.5
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 2.1e-78 296.6 261 62.8
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 2.2e-75 286.6 188 70.7
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.8e-74 283.5 191 73.8
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 1.8e-74 283.5 191 72.3
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 2.4e-74 283.1 191 70.7
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 5.3e-74 282.0 159 84.3
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 4.8e-67 258.8 189 64.6
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.8e-67 258.8 161 78.9
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.0e-64 251.1 168 75.0
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 1.5e-63 247.3 137 85.4
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 9.4e-63 244.6 137 83.2
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 8.0e-62 241.5 189 61.9
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.5e-57 225.7 139 82.7
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 1.5e-55 220.7 191 61.3
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 4.7e-54 215.7 193 57.0
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 1.4e-53 214.2 191 62.3
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 8.8e-53 211.5 107 93.5
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 7.0e-50 201.8 135 74.8
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 7.0e-50 201.8 135 74.8
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 7.0e-50 201.8 135 74.8
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.3e-45 186.8 105 84.8
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 4.0e-45 186.0 108 83.3
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.8e-42 177.2 159 60.4
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 4.1e-42 176.0 111 77.5
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 4.7e-38 162.5 154 59.1
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.4e-37 161.0 154 58.4
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.4e-37 161.0 154 58.4
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 5.4e-34 149.1 84 85.7
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 4.3e-31 139.4 179 44.1
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 6.4e-27 125.6 73 79.5
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 6.4e-27 125.6 73 79.5
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 2.4e-26 123.6 72 79.2
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 3.0e-24 116.7 93 68.8
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 2.5e-23 113.6 68 76.5
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 5.8e-20 102.4 130 46.9
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 1.4e-18 97.8 60 73.3
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 6.6e-16 89.0 44 90.9
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 1.5e-15 87.8 59 71.2
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 1.6e-14 84.3 86 53.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.4e-13 81.3 225 31.1
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 3.4e-12 76.6 58 67.2
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.4e-10 71.2 50 64.0
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 9.3e-10 68.6 37 94.6
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 2.3e-08 63.9 36 88.9
MSTRG.24375 Avicennia marina HOM05D001701 ORTHO05D001628 4.3e-07 59.7 37 78.4
SalBow2G0221 Salvia bowleyana HOM05D001701 ORTHO05D001628 7.3e-07 58.9 37 81.1
MSTRG.22220 Avicennia marina HOM05D001701 ORTHO05D001628 1.3e-06 58.2 37 75.7


User provided reference genes

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