Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold170G38818 Striga asiatica HOM05D001529 ORTHO05D404896 4.6e-106 387.9 191 100.0
SGA_v2.0_scaffold97G29159 Striga asiatica HOM05D001529 ORTHO05D401536 1.5e-40 170.2 155 63.2
Migut.H01288 Erythranthe guttata HOM05D001529 ORTHO05D007595 3.3e-32 142.5 160 50.0
Hma1.2p1_0405F.1_g145720 Hydrangea macrophylla HOM05D001529 ORTHO05D007595 3.3e-32 142.5 160 48.8
CSS0013229 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 9.7e-32 141.0 160 49.4
Dinv07847 Davidia involucrata HOM05D001529 ORTHO05D007595 1.7e-31 140.2 160 47.5
DCAR_021112 Daucus carota HOM05D001529 ORTHO05D007595 4.8e-31 138.7 160 48.8
vmacro09386 Vaccinium macrocarpon HOM05D001529 ORTHO05D007595 4.8e-31 138.7 160 48.1
Actinidia21451 Actinidia chinensis HOM05D001529 ORTHO05D007595 6.3e-31 138.3 160 48.1
SGA_v2.0_scaffold49G18408 Striga asiatica HOM05D001529 ORTHO05D007595 6.3e-31 138.3 160 48.8
Nn1g03283 Nelumbo nucifera HOM05D001529 ORTHO05D007595 1.1e-30 137.5 160 47.5
Eucgr.A01064 Eucalyptus grandis HOM05D001529 ORTHO05D007595 1.4e-30 137.1 148 50.7
Glyma.19G191200 Glycine max HOM05D001529 ORTHO05D007595 1.4e-30 137.1 160 46.2
MSTRG.12244 Avicennia marina HOM05D001529 ORTHO05D007595 1.8e-30 136.7 160 47.5
Rhsim04G0043200 Rhododendron simsii HOM05D001529 ORTHO05D007595 1.8e-30 136.7 160 46.9
Sc20g0003910 Simmondsia chinensis HOM05D001529 ORTHO05D007595 1.8e-30 136.7 160 48.1
Psat5g104480 Pisum sativum HOM05D001529 ORTHO05D007595 2.4e-30 136.3 160 47.5
Potri.014G162200 Populus trichocarpa HOM05D001529 ORTHO05D007595 2.4e-30 136.3 160 47.5
Cc00_g04140 Coffea canephora HOM05D001529 ORTHO05D007595 3.1e-30 136.0 160 48.8
Sabra14G0123900 Salix brachista HOM05D001529 ORTHO05D007595 3.1e-30 136.0 160 47.5
Atru.chr6.3341 Acer truncatum HOM05D001529 ORTHO05D007595 4.1e-30 135.6 160 46.2
HanXRQChr10g0306381 Helianthus annuus HOM05D001529 ORTHO05D007595 4.1e-30 135.6 160 46.2
ECA234G3620 Erigeron canadensis HOM05D001529 ORTHO05D007595 6.9e-30 134.8 160 46.2
PGR042G1774 Punica granatum HOM05D001529 ORTHO05D007595 6.9e-30 134.8 160 46.9
Duzib138G1061 Durio zibethinus HOM05D001529 ORTHO05D007595 9.1e-30 134.4 160 46.9
QL08p028982 Quercus lobata HOM05D001529 ORTHO05D007595 9.1e-30 134.4 160 46.2
QL93p0116_0063 Quercus lobata HOM05D001529 ORTHO05D007595 9.1e-30 134.4 160 46.2
TPR.G19324 Trifolium pratense HOM05D001529 ORTHO05D007595 9.1e-30 134.4 160 46.2
Lj1C790T8 Lonicera japonica HOM05D001529 ORTHO05D007595 1.2e-29 134.0 160 46.2
Lj6g0006977 Lotus japonicus HOM05D001529 ORTHO05D007595 1.2e-29 134.0 160 45.6
Solyc07g048080.4 Solanum lycopersicum HOM05D001529 ORTHO05D007595 1.2e-29 134.0 160 46.9
Sopen07g024500 Solanum pennellii HOM05D001529 ORTHO05D007595 1.2e-29 134.0 160 46.9
Aqoxy4G02192 Aquilegia oxysepala HOM05D001529 ORTHO05D007595 1.5e-29 133.7 160 47.5
CiPaw.03G277800 Carya illinoinensis HOM05D001529 ORTHO05D007595 1.5e-29 133.7 160 46.2
MBI19_g06153_MAGBIO Magnolia biondii HOM05D001529 ORTHO05D007595 1.5e-29 133.7 160 46.2
CANSAT64G0296 Cannabis sativa HOM05D001529 ORTHO05D007595 2.0e-29 133.3 160 46.9
Eucgr.A01062 Eucalyptus grandis HOM05D001529 ORTHO05D007595 2.0e-29 133.3 160 46.2
TAR626G0907 Trochodendron aralioides HOM05D001529 ORTHO05D007595 2.0e-29 133.3 160 45.6
GSVIVG01030033001 Vitis vinifera HOM05D001529 ORTHO05D007595 3.4e-29 132.5 160 46.2
Lsat_1_v5_gn_5_123180 Lactuca sativa HOM05D001529 ORTHO05D007595 4.5e-29 132.1 160 45.6
TWI36G1606 Tripterygium wilfordii HOM05D001529 ORTHO05D007595 4.5e-29 132.1 160 46.9
AL3G42430 Arabidopsis lyrata HOM05D001529 ORTHO05D007595 5.9e-29 131.7 160 46.2
AT2G04842 Arabidopsis thaliana HOM05D001529 ORTHO05D007595 5.9e-29 131.7 160 46.2
C03p55280 Brassica napus HOM05D001529 ORTHO05D007595 5.9e-29 131.7 160 46.2
BolC3t17800H Brassica oleracea HOM05D001529 ORTHO05D007595 5.9e-29 131.7 160 46.2
BraA03t13580Z Brassica rapa HOM05D001529 ORTHO05D007595 5.9e-29 131.7 160 46.2
Carub.0003s2643 Capsella rubella HOM05D001529 ORTHO05D007595 5.9e-29 131.7 160 46.2
Medtr3g083180 Medicago truncatula HOM05D001529 ORTHO05D007595 5.9e-29 131.7 160 45.6
VMungo1080G0307 Vigna mungo HOM05D001529 ORTHO05D007595 5.9e-29 131.7 160 45.6
arahy.Tifrunner.gnm1.ann1.TVN328 Arachis hypogaea HOM05D001529 ORTHO05D007595 1.0e-28 131.0 160 45.0
A03p44470 Brassica napus HOM05D001529 ORTHO05D007595 1.3e-28 130.6 160 45.6
Thhalv10002438m.g Eutrema salsugineum HOM05D001529 ORTHO05D007595 1.3e-28 130.6 160 45.6
Sp3g23420 Schrenkiella parvula HOM05D001529 ORTHO05D007595 1.3e-28 130.6 160 45.6
THA.LOC104815352 Tarenaya hassleriana HOM05D001529 ORTHO05D007595 1.3e-28 130.6 160 45.6
Ah.06g192740 Amaranthus hybridus HOM05D001529 ORTHO05D007595 1.7e-28 130.2 160 45.6
THA.LOC104826614 Tarenaya hassleriana HOM05D001529 ORTHO05D007595 1.7e-28 130.2 160 45.0
Ca_16364_v3 Cicer arietinum L. HOM05D001529 ORTHO05D007595 2.2e-28 129.8 90 66.7
Lalb_Chr14g0362561 Lupinus albus HOM05D001529 ORTHO05D007595 2.2e-28 129.8 160 44.4
Thecc.01G188800 Theobroma cacao HOM05D001529 ORTHO05D007595 2.2e-28 129.8 160 45.0
CDE07G1746 Ceratophyllum demersum HOM05D001529 ORTHO05D007595 3.8e-28 129.0 160 45.0
Gohir.A07G167800 Gossypium hirsutum HOM05D001529 ORTHO05D007595 3.8e-28 129.0 160 45.0
arahy.Tifrunner.gnm1.ann1.6FNM9R Arachis hypogaea HOM05D001529 ORTHO05D007595 5.0e-28 128.6 160 44.4
arahy.Tifrunner.gnm1.ann1.9BA4YH Arachis hypogaea HOM05D001529 ORTHO05D007595 5.0e-28 128.6 160 44.4
Manes.12G062800 Manihot esculenta HOM05D001529 ORTHO05D007595 6.5e-28 128.3 160 45.0
Phvul.009G238000 Phaseolus vulgaris HOM05D001529 ORTHO05D007595 6.5e-28 128.3 83 68.7
Aa31sc53G50 Aethionema arabicum HOM05D001529 ORTHO05D007595 8.5e-28 127.9 160 45.0
ATR0712G164 Amborella trichopoda HOM05D001529 ORTHO05D007595 8.5e-28 127.9 160 44.4
PSO541G2760 Papaver somniferum HOM05D001529 ORTHO05D007595 8.5e-28 127.9 160 43.8
PSO675G8054 Papaver somniferum HOM05D001529 ORTHO05D007595 8.5e-28 127.9 160 43.8
AUR62005012 Chenopodium quinoa HOM05D001529 ORTHO05D007595 1.1e-27 127.5 160 43.8
Gohir.D07G173400 Gossypium hirsutum HOM05D001529 ORTHO05D007595 1.1e-27 127.5 160 44.4
Gorai.001G193700 Gossypium raimondii HOM05D001529 ORTHO05D007595 1.1e-27 127.5 160 44.4
MD09G1120400 Malus domestica HOM05D001529 ORTHO05D007595 1.1e-27 127.5 160 45.0
Peaxi162Scf02035g00017 Petunia axillaris HOM05D001529 ORTHO05D007595 1.1e-27 127.5 156 46.2
Hund24142 Selenicereus undatus HOM05D001529 ORTHO05D007595 1.1e-27 127.5 160 43.8
Zm00001eb325920 Zea mays HOM05D001529 ORTHO05D007595 1.4e-27 127.1 160 45.0
CARHR102830 Cardamine hirsuta HOM05D001529 ORTHO05D007595 1.9e-27 126.7 90 64.4
Eucgr.A01066 Eucalyptus grandis HOM05D001529 ORTHO05D007595 1.9e-27 126.7 156 45.5
EL10Ac4g09205 Beta vulgaris HOM05D001529 ORTHO05D007595 2.5e-27 126.3 160 43.8
ClCG02G002590 Citrullus lanatus HOM05D001529 ORTHO05D007595 2.5e-27 126.3 160 43.8
CsaV3_7G002750 Cucumis sativus L. HOM05D001529 ORTHO05D007595 2.5e-27 126.3 160 43.8
Sed0023062 Sechium edule HOM05D001529 ORTHO05D007595 2.5e-27 126.3 160 43.8
PGSC0003DMG400006139 Solanum tuberosum HOM05D001529 ORTHO05D007595 3.2e-27 125.9 160 44.4
AUR62000956 Chenopodium quinoa HOM05D001529 ORTHO05D007595 4.2e-27 125.6 160 43.1
Haze_12706 Corylus avellana HOM05D001529 ORTHO05D007595 4.2e-27 125.6 83 67.5
RcHm_v2.0_Chr2g0156891 Rosa chinensis HOM05D001529 ORTHO05D007595 4.2e-27 125.6 160 43.8
CAN.G897.4 Capsicum annuum HOM05D001529 ORTHO05D007595 7.2e-27 124.8 156 44.9
MELO3C024216.2 Cucumis melo HOM05D001529 ORTHO05D007595 7.2e-27 124.8 160 42.5
FvH4_6g41340 Fragaria vesca HOM05D001529 ORTHO05D007595 7.2e-27 124.8 160 43.8
FAN05G0710 Fragaria x ananassa HOM05D001529 ORTHO05D007595 7.2e-27 124.8 160 43.8
Hma1.2p1_0405F.1_g145730 Hydrangea macrophylla HOM05D001529 ORTHO05D007595 9.4e-27 124.4 79 69.6
Os02g0538000 Oryza sativa ssp. japonica HOM05D001529 ORTHO05D007595 1.6e-26 123.6 160 43.8
unitig_62.g23257 Utricularia gibba HOM05D001529 ORTHO05D007595 1.4e-25 120.6 160 43.1
FAN09G0877 Fragaria x ananassa HOM05D001529 ORTHO05D007595 1.8e-25 120.2 90 62.2
SEGI_09505 Sequoiadendron giganteum HOM05D001529 ORTHO05D007595 1.1e-24 117.5 160 41.2
HPP92_022799 Vanilla planifolia HOM05D001529 ORTHO05D007595 1.1e-24 117.5 160 41.9
SMO145G0032 Selaginella moellendorffii HOM05D001529 ORTHO05D007595 2.2e-23 113.2 159 39.0
CSS0037422 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 3.7e-23 112.5 156 41.0
CSS0041772 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 3.7e-23 112.5 156 41.0
Ciclev10018290m.g Citrus clementina HOM05D001529 ORTHO05D007595 1.2e-21 107.5 128 46.1
Pp3c14_20630 Physcomitrium patens HOM05D001529 ORTHO05D007595 2.6e-21 106.3 153 38.6
Pp3c2_11130 Physcomitrium patens HOM05D001529 ORTHO05D007595 2.6e-21 106.3 90 53.3
Mapoly0096s0034 Marchantia polymorpha HOM05D001529 ORTHO05D007595 1.3e-20 104.0 103 50.5
CBR_g3851 Chara braunii HOM05D001529 ORTHO05D007595 1.7e-20 103.6 90 54.4
MCO11G246 Micromonas commoda HOM05D001529 ORTHO05D007595 4.2e-19 99.0 101 47.5
Cre10.g421600 Chlamydomonas reinhardtii HOM05D001529 ORTHO05D007595 1.2e-16 90.9 83 48.2
PRCOL_00005026 Prasinoderma coloniale HOM05D001529 ORTHO05D007595 1.5e-16 90.5 82 48.8
SGA_v2.0_scaffold8G04401 Striga asiatica HOM05D001529 ORTHO05D399536 9.1e-14 81.3 47 78.7
Glyma.U010902 Glycine max HOM05D001529 ORTHO05D007595 2.0e-13 80.1 50 70.0
BcaB08g34492 Brassica carinata HOM05D001529 ORTHO05D007595 1.3e-12 77.4 48 72.9
GSVIVG01030028001 Vitis vinifera HOM05D001529 ORTHO05D007595 1.9e-11 73.6 48 68.8
Prupe.3G203100 Prunus persica HOM05D001529 ORTHO05D007595 1.6e-10 70.5 48 66.7
FAN14G1621 Fragaria x ananassa HOM05D001529 ORTHO05D007595 6.1e-10 68.6 48 62.5
BcaNung03917 Brassica carinata HOM05D001529 ORTHO05D003309 3.7e-07 59.3 76 36.8
BcaNung03670 Brassica carinata HOM05D001529 ORTHO05D003309 8.3e-07 58.2 76 35.5
A06p37060 Brassica napus HOM05D001529 ORTHO05D003309 8.3e-07 58.2 76 35.5
C07p41380 Brassica napus HOM05D001529 ORTHO05D003309 8.3e-07 58.2 76 35.5
BolC7t44668H Brassica oleracea HOM05D001529 ORTHO05D003309 8.3e-07 58.2 76 35.5
BraA06t26631Z Brassica rapa HOM05D001529 ORTHO05D003309 8.3e-07 58.2 76 35.5
Pp3c20_19020 Physcomitrium patens HOM05D001529 ORTHO05D003309 8.3e-07 58.2 76 36.8
Aa31LG7G7800 Aethionema arabicum HOM05D001529 ORTHO05D003309 1.4e-06 57.4 76 34.2
AT5G26830 Arabidopsis thaliana HOM05D001529 ORTHO05D003309 1.4e-06 57.4 76 34.2
Nitab4.5_0004358g0030 Nicotiana tabacum HOM05D001529 ORTHO05D007595 1.8e-06 57.0 108 35.2
Thhalv10003725m.g Eutrema salsugineum HOM05D001529 ORTHO05D003309 2.4e-06 56.6 76 34.2
AL6G38710 Arabidopsis lyrata HOM05D001529 ORTHO05D003309 3.1e-06 56.2 76 34.2
BcaB04g19710 Brassica carinata HOM05D001529 ORTHO05D003309 3.1e-06 56.2 76 34.2
BcaB04g19712 Brassica carinata HOM05D001529 ORTHO05D003309 3.1e-06 56.2 76 34.2
C09p06250 Brassica napus HOM05D001529 ORTHO05D003309 3.1e-06 56.2 76 34.2
BolC9t53545H Brassica oleracea HOM05D001529 ORTHO05D003309 3.1e-06 56.2 76 34.2
BraA09t36206Z Brassica rapa HOM05D001529 ORTHO05D003309 3.1e-06 56.2 76 34.2
Carub.0006s2450 Capsella rubella HOM05D001529 ORTHO05D003309 3.1e-06 56.2 76 34.2
CARHR186700 Cardamine hirsuta HOM05D001529 ORTHO05D003309 3.1e-06 56.2 76 34.2
MELO3C022873.2 Cucumis melo HOM05D001529 ORTHO05D003309 3.1e-06 56.2 76 34.2
Nitab4.5_0004215g0030 Nicotiana tabacum HOM05D001529 ORTHO05D007595 3.1e-06 56.2 108 35.2
SHI34429 Sapria himalayana HOM05D001529 ORTHO05D003309 3.1e-06 56.2 91 33.0
Sp2g21160 Schrenkiella parvula HOM05D001529 ORTHO05D003309 3.1e-06 56.2 76 34.2
SEGI_40352 Sequoiadendron giganteum HOM05D001529 ORTHO05D003309 5.4e-06 55.5 76 35.5
A09p05640 Brassica napus HOM05D001529 ORTHO05D003309 7.0e-06 55.1 76 32.9
MD15G1401400 Malus domestica HOM05D001529 ORTHO05D018658 7.0e-06 55.1 106 34.0
Os08g0295300 Oryza sativa ssp. japonica HOM05D001529 ORTHO05D003309 7.0e-06 55.1 76 35.5
TWI18G0452 Tripterygium wilfordii HOM05D001529 ORTHO05D003309 7.0e-06 55.1 76 34.2
TWI36G0528 Tripterygium wilfordii HOM05D001529 ORTHO05D003309 7.0e-06 55.1 76 34.2
QL03p061952 Quercus lobata HOM05D001529 ORTHO05D003309 9.1e-06 54.7 76 34.2
HPP92_003859 Vanilla planifolia HOM05D001529 ORTHO05D003309 9.1e-06 54.7 76 35.5


User provided reference genes

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