Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold167G38471 Striga asiatica HOM05D000140 ORTHO05D404715 3.5e-115 418.3 210 100.0
SGA_v2.0_scaffold239G44029 Striga asiatica HOM05D000044 ORTHO05D004085 4.8e-16 89.0 88 59.1
SGA_v2.0_scaffold71G23780 Striga asiatica HOM05D000140 ORTHO05D000087 1.9e-12 77.0 39 89.7
SGA_v2.0_scaffold45G16975 Striga asiatica HOM05D000140 ORTHO05D000087 7.2e-12 75.1 39 87.2
MSTRG.10987 Avicennia marina HOM05D000140 ORTHO05D000087 3.6e-11 72.8 39 82.1
SalBow6G4230 Salvia bowleyana HOM05D000140 ORTHO05D000087 6.1e-11 72.0 39 82.1
Migut.I01021 Erythranthe guttata HOM05D000140 ORTHO05D000087 1.0e-10 71.2 39 84.6
MSTRG.22588 Avicennia marina HOM05D000140 ORTHO05D000087 1.1e-09 67.8 39 79.5
Oeu011897.4 Olea europaea HOM05D000140 ORTHO05D000087 3.3e-09 66.2 40 80.0
Gohir.D03G056400 Gossypium hirsutum HOM05D000140 ORTHO05D000087 5.7e-09 65.5 39 74.4
Hma1.2p1_1116F.1_g258910 Hydrangea macrophylla HOM05D000140 ORTHO05D000087 5.7e-09 65.5 39 74.4
Hma1.2p1_2396F.1_g321335 Hydrangea macrophylla HOM05D000140 ORTHO05D000087 5.7e-09 65.5 39 74.4
TAR624G0137 Trochodendron aralioides HOM05D000140 ORTHO05D000087 7.4e-09 65.1 39 74.4
Cc04_g01990 Coffea canephora HOM05D000140 ORTHO05D000087 9.7e-09 64.7 50 64.0
Oeu002507.1 Olea europaea HOM05D000140 ORTHO05D000087 1.3e-08 64.3 39 71.8
Peaxi162Scf00177g00216 Petunia axillaris HOM05D000140 ORTHO05D000087 1.3e-08 64.3 39 74.4
Gohir.D01G025940 Gossypium hirsutum HOM05D000140 ORTHO05D000087 1.7e-08 63.9 39 74.4
Gohir.D10G061100 Gossypium hirsutum HOM05D000140 ORTHO05D000087 2.2e-08 63.5 39 74.4
Gorai.011G065300 Gossypium raimondii HOM05D000140 ORTHO05D000087 2.2e-08 63.5 39 74.4
MSTRG.4765 Avicennia marina HOM05D000140 ORTHO05D000087 2.8e-08 63.2 40 75.0
Dinv37917 Davidia involucrata HOM05D000140 ORTHO05D000087 2.8e-08 63.2 39 71.8
MELO3C013055.2 Cucumis melo HOM05D000140 ORTHO05D000087 3.7e-08 62.8 39 71.8
CsaV3_3G043890 Cucumis sativus L. HOM05D000140 ORTHO05D000087 3.7e-08 62.8 39 71.8
Migut.D00972 Erythranthe guttata HOM05D000140 ORTHO05D000087 3.7e-08 62.8 40 72.5
Nitab4.5_0000255g0150 Nicotiana tabacum HOM05D000140 ORTHO05D000087 3.7e-08 62.8 39 71.8
Nitab4.5_0001483g0020 Nicotiana tabacum HOM05D000140 ORTHO05D000087 3.7e-08 62.8 39 71.8
CAN.G635.3 Capsicum annuum HOM05D000140 ORTHO05D000087 4.8e-08 62.4 39 69.2
Nn6g35471 Nelumbo nucifera HOM05D000140 ORTHO05D000087 4.8e-08 62.4 39 71.8
Nn8g38873 Nelumbo nucifera HOM05D000140 ORTHO05D000087 4.8e-08 62.4 39 71.8
Peaxi162Scf00038g01528 Petunia axillaris HOM05D000140 ORTHO05D000087 4.8e-08 62.4 39 69.2
Haze_15946 Corylus avellana HOM05D000140 ORTHO05D000087 6.3e-08 62.0 39 69.2
Dinv30383 Davidia involucrata HOM05D000140 ORTHO05D000087 6.3e-08 62.0 39 71.8
Eucgr.J02867 Eucalyptus grandis HOM05D000140 ORTHO05D000087 6.3e-08 62.0 39 69.2
CSS0043562 Camellia sinensis var. sinensis HOM05D000140 ORTHO05D000087 8.2e-08 61.6 40 75.0
CSS0046101 Camellia sinensis var. sinensis HOM05D000140 ORTHO05D000087 8.2e-08 61.6 40 75.0
CAN.G1389.15 Capsicum annuum HOM05D000140 ORTHO05D000087 8.2e-08 61.6 39 66.7
ClCG07G013720 Citrullus lanatus HOM05D000140 ORTHO05D000087 8.2e-08 61.6 39 69.2
Duzib235G0721 Durio zibethinus HOM05D000140 ORTHO05D000087 8.2e-08 61.6 38 73.7
Oeu026746.1 Olea europaea HOM05D000140 ORTHO05D000087 8.2e-08 61.6 40 72.5
Sed0004527 Sechium edule HOM05D000140 ORTHO05D000087 8.2e-08 61.6 39 69.2
Solyc03g121540.3 Solanum lycopersicum HOM05D000140 ORTHO05D000087 1.1e-07 61.2 39 66.7
Sopen03g040350 Solanum pennellii HOM05D000140 ORTHO05D000087 1.1e-07 61.2 39 66.7
PGSC0003DMG400002590 Solanum tuberosum HOM05D000140 ORTHO05D000087 1.1e-07 61.2 39 66.7
Actinidia32144 Actinidia chinensis HOM05D000140 ORTHO05D000087 1.4e-07 60.8 39 69.2
COL.COLO4_30655 Corchorus olitorius HOM05D000140 ORTHO05D000087 1.4e-07 60.8 39 69.2
Gohir.A02G115400 Gossypium hirsutum HOM05D000140 ORTHO05D000087 1.4e-07 60.8 39 69.2
Nitab4.5_0000189g0330 Nicotiana tabacum HOM05D000140 ORTHO05D000087 1.4e-07 60.8 39 66.7
Solyc12g044880.2 Solanum lycopersicum HOM05D000140 ORTHO05D000087 1.4e-07 60.8 39 66.7
Sopen12g023240 Solanum pennellii HOM05D000140 ORTHO05D000087 1.4e-07 60.8 39 66.7
Thecc.06G111100 Theobroma cacao HOM05D000140 ORTHO05D000087 1.4e-07 60.8 39 69.2
Duzib160G0725 Durio zibethinus HOM05D000140 ORTHO05D000087 1.8e-07 60.5 39 69.2
Nitab4.5_0001295g0040 Nicotiana tabacum HOM05D000140 ORTHO05D000087 1.8e-07 60.5 38 68.4
Nitab4.5_0007429g0030 Nicotiana tabacum HOM05D000140 ORTHO05D000087 1.8e-07 60.5 38 68.4
Ah.08g216190 Amaranthus hybridus HOM05D000140 ORTHO05D000087 2.4e-07 60.1 39 64.1
Ah.15g094180 Amaranthus hybridus HOM05D000140 ORTHO05D002561 2.4e-07 60.1 39 64.1
AUR62038131 Chenopodium quinoa HOM05D000140 ORTHO05D000087 2.4e-07 60.1 39 64.1
Hund18722 Selenicereus undatus HOM05D000140 ORTHO05D000087 2.4e-07 60.1 39 66.7
PGSC0003DMG400033646 Solanum tuberosum HOM05D000140 ORTHO05D000087 2.4e-07 60.1 39 66.7
TAR636G0845 Trochodendron aralioides HOM05D000140 ORTHO05D000087 2.4e-07 60.1 39 66.7
TAR636G3688 Trochodendron aralioides HOM05D000140 ORTHO05D000087 2.4e-07 60.1 39 66.7
GSVIVG01016849001 Vitis vinifera HOM05D000140 ORTHO05D000087 2.4e-07 60.1 39 66.7
EL10Ac7g15768 Beta vulgaris HOM05D000140 ORTHO05D000087 3.1e-07 59.7 39 64.1
QL05p012754 Quercus lobata HOM05D000140 ORTHO05D000087 3.1e-07 59.7 39 66.7
Solyc06g062580.3 Solanum lycopersicum HOM05D000140 ORTHO05D000087 3.1e-07 59.7 39 66.7
Sopen06g022060 Solanum pennellii HOM05D000140 ORTHO05D000087 3.1e-07 59.7 39 66.7
PGSC0003DMG400004842 Solanum tuberosum HOM05D000140 ORTHO05D000087 3.1e-07 59.7 39 66.7
Atru.chr1.3719 Acer truncatum HOM05D000140 ORTHO05D000087 4.1e-07 59.3 38 68.4
CSS0017100 Camellia sinensis var. sinensis HOM05D000140 ORTHO05D000087 4.1e-07 59.3 39 66.7
CAN.G12.16 Capsicum annuum HOM05D000140 ORTHO05D000087 4.1e-07 59.3 39 66.7
AUR62009819 Chenopodium quinoa HOM05D000140 ORTHO05D000087 4.1e-07 59.3 39 64.1
THA.LOC104815646 Tarenaya hassleriana HOM05D000140 ORTHO05D000087 4.1e-07 59.3 39 64.1
Actinidia21756 Actinidia chinensis HOM05D000140 ORTHO05D000087 5.3e-07 58.9 39 66.7
Aqoxy7G04048 Aquilegia oxysepala HOM05D000140 ORTHO05D000087 5.3e-07 58.9 38 65.8
A01p39830 Brassica napus HOM05D000140 ORTHO05D000087 5.3e-07 58.9 39 64.1
BraA01t04022Z Brassica rapa HOM05D000140 ORTHO05D000087 5.3e-07 58.9 39 64.1
Lsat_1_v5_gn_5_135361 Lactuca sativa HOM05D000140 ORTHO05D000087 5.3e-07 58.9 39 64.1
Potri.001G200400 Populus trichocarpa HOM05D000140 ORTHO05D000087 5.3e-07 58.9 39 66.7
Sabra03G0025200 Salix brachista HOM05D000140 ORTHO05D000087 5.3e-07 58.9 39 66.7
TAR626G0398 Trochodendron aralioides HOM05D000140 ORTHO05D000087 5.3e-07 58.9 39 64.1
arahy.Tifrunner.gnm1.ann1.1J7Y06 Arachis hypogaea HOM05D000140 ORTHO05D000087 7.0e-07 58.5 39 64.1
arahy.Tifrunner.gnm1.ann1.DCC0MI Arachis hypogaea HOM05D000140 ORTHO05D000087 7.0e-07 58.5 39 64.1
CANSAT56G1151 Cannabis sativa HOM05D000140 ORTHO05D000087 7.0e-07 58.5 39 64.1
Cfa003590 Carpinus fangiana HOM05D000140 ORTHO05D000087 7.0e-07 58.5 39 66.7
CDE07G0271 Ceratophyllum demersum HOM05D000140 ORTHO05D000087 7.0e-07 58.5 50 56.0
SEGI_27888 Sequoiadendron giganteum HOM05D000140 ORTHO05D000087 7.0e-07 58.5 38 68.4
TWI79G1406 Tripterygium wilfordii HOM05D000140 ORTHO05D000087 7.0e-07 58.5 39 64.1
Aa31LG8G930 Aethionema arabicum HOM05D000140 ORTHO05D000087 9.1e-07 58.2 39 61.5
DCAR_016162 Daucus carota HOM05D000140 ORTHO05D000087 9.1e-07 58.2 39 64.1
Manes.04G139200 Manihot esculenta HOM05D000140 ORTHO05D000087 9.1e-07 58.2 39 66.7
Nitab4.5_0000549g0050 Nicotiana tabacum HOM05D000140 ORTHO05D000087 9.1e-07 58.2 39 69.2
Os01g0580200 Oryza sativa ssp. japonica HOM05D000140 ORTHO05D000087 9.1e-07 58.2 38 73.7
Sed0014504 Sechium edule HOM05D000140 ORTHO05D000087 9.1e-07 58.2 38 65.8
TWI31G1127 Tripterygium wilfordii HOM05D000140 ORTHO05D000087 9.1e-07 58.2 39 66.7
BcaB04g20980 Brassica carinata HOM05D000140 ORTHO05D000087 1.2e-06 57.8 39 61.5
BcaC09g48368 Brassica carinata HOM05D000140 ORTHO05D000087 1.2e-06 57.8 39 61.5
C01p50830 Brassica napus HOM05D000140 ORTHO05D000087 1.2e-06 57.8 39 61.5
BolC1t05031H Brassica oleracea HOM05D000140 ORTHO05D000087 1.2e-06 57.8 39 61.5
CiPaw.02G140500 Carya illinoinensis HOM05D000140 ORTHO05D000087 1.2e-06 57.8 39 61.5
Gohir.D05G136700 Gossypium hirsutum HOM05D000140 ORTHO05D000087 1.2e-06 57.8 38 71.1
Gorai.009G140800 Gossypium raimondii HOM05D000140 ORTHO05D000087 1.2e-06 57.8 38 71.1
HanXRQChr10g0312941 Helianthus annuus HOM05D000140 ORTHO05D000087 1.2e-06 57.8 39 61.5
Lj5C45G8 Lonicera japonica HOM05D000140 ORTHO05D000087 1.2e-06 57.8 39 66.7
Lalb_Chr24g0396351 Lupinus albus HOM05D000140 ORTHO05D000087 1.2e-06 57.8 39 59.0
Peaxi162Scf00207g01052 Petunia axillaris HOM05D000140 ORTHO05D000087 1.2e-06 57.8 39 61.5
RcHm_v2.0_Chr2g0142961 Rosa chinensis HOM05D000140 ORTHO05D000087 1.2e-06 57.8 39 64.1
Sc15g0000120 Simmondsia chinensis HOM05D000140 ORTHO05D000087 1.2e-06 57.8 39 64.1
CDE02G0591 Ceratophyllum demersum HOM05D000140 ORTHO05D000087 1.5e-06 57.4 38 60.5
DCAR_007619 Daucus carota HOM05D000140 ORTHO05D000087 1.5e-06 57.4 39 64.1
FvH4_6g33260 Fragaria vesca HOM05D000140 ORTHO05D000087 1.5e-06 57.4 39 64.1
FAN05G5696 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.5e-06 57.4 39 64.1
FAN09G1385 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.5e-06 57.4 39 64.1
FAN14G3327 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.5e-06 57.4 39 64.1
Gohir.A05G134600 Gossypium hirsutum HOM05D000140 ORTHO05D000087 1.5e-06 57.4 38 68.4
Hund31349 Selenicereus undatus HOM05D000140 ORTHO05D000087 1.5e-06 57.4 39 61.5
Hund31350 Selenicereus undatus HOM05D000140 ORTHO05D000087 1.5e-06 57.4 39 61.5
Hund31351 Selenicereus undatus HOM05D000140 ORTHO05D000087 1.5e-06 57.4 39 61.5
Hund31352 Selenicereus undatus HOM05D000140 ORTHO05D000087 1.5e-06 57.4 39 61.5
THA.LOC104810343 Tarenaya hassleriana HOM05D000140 ORTHO05D000087 2.0e-06 57.0 39 59.0
Zm00001eb160380 Zea mays HOM05D000140 ORTHO05D000087 2.0e-06 57.0 38 71.1
CARHR088480 Cardamine hirsuta HOM05D000140 ORTHO05D000087 2.6e-06 56.6 39 59.0
CiPaw.01G225400 Carya illinoinensis HOM05D000140 ORTHO05D000087 2.6e-06 56.6 39 61.5
Eucgr.F03130 Eucalyptus grandis HOM05D000140 ORTHO05D000087 2.6e-06 56.6 37 64.9
Thhalv10020056m.g Eutrema salsugineum HOM05D000140 ORTHO05D000087 2.6e-06 56.6 39 59.0
MD09G1193900 Malus domestica HOM05D000140 ORTHO05D000087 2.6e-06 56.6 39 64.1
PSO063G5125 Papaver somniferum HOM05D000140 ORTHO05D000087 2.6e-06 56.6 39 61.5
PSO832G0795 Papaver somniferum HOM05D000140 ORTHO05D000087 2.6e-06 56.6 39 61.5
Prupe.3G050200 Prunus persica HOM05D000140 ORTHO05D000087 2.6e-06 56.6 39 61.5
PGR102G3122 Punica granatum HOM05D000140 ORTHO05D000087 2.6e-06 56.6 39 64.1
Sp3g11950 Schrenkiella parvula HOM05D000140 ORTHO05D000087 2.6e-06 56.6 39 59.0
unitig_26.g8930 Utricularia gibba HOM05D000140 ORTHO05D000087 2.6e-06 56.6 50 58.0
vmacro18788 Vaccinium macrocarpon HOM05D000140 ORTHO05D000087 2.6e-06 56.6 40 67.5
AL3G25800 Arabidopsis lyrata HOM05D000140 ORTHO05D000087 3.5e-06 56.2 39 59.0
AT3G13750 Arabidopsis thaliana HOM05D000140 ORTHO05D000087 3.5e-06 56.2 39 59.0
BcaB06g25437 Brassica carinata HOM05D000140 ORTHO05D000087 3.5e-06 56.2 39 59.0
BcaB06g25440 Brassica carinata HOM05D000140 ORTHO05D000087 3.5e-06 56.2 39 59.0
A05p35670 Brassica napus HOM05D000140 ORTHO05D000087 3.5e-06 56.2 39 59.0
C05p54080 Brassica napus HOM05D000140 ORTHO05D000087 3.5e-06 56.2 39 59.0
BolC5t34073H Brassica oleracea HOM05D000140 ORTHO05D000087 3.5e-06 56.2 39 59.0
BraA05t22374Z Brassica rapa HOM05D000140 ORTHO05D000087 3.5e-06 56.2 39 59.0
Carub.0003s1327 Capsella rubella HOM05D000140 ORTHO05D000087 3.5e-06 56.2 39 59.0
ECA234G3575 Erigeron canadensis HOM05D000140 ORTHO05D000087 3.5e-06 56.2 39 59.0
FAN02G1703 Fragaria x ananassa HOM05D000140 ORTHO05D000087 3.5e-06 56.2 39 64.1
PSO210G1720 Papaver somniferum HOM05D000140 ORTHO05D000087 3.5e-06 56.2 39 64.1
PSO210G5236 Papaver somniferum HOM05D000140 ORTHO05D000087 3.5e-06 56.2 39 64.1
unitig_88.g27592 Utricularia gibba HOM05D000140 ORTHO05D000087 3.5e-06 56.2 39 61.5
Aqoxy7G01218 Aquilegia oxysepala HOM05D000140 ORTHO05D000087 4.5e-06 55.8 39 59.0
Potri.003G038500 Populus trichocarpa HOM05D000140 ORTHO05D000087 4.5e-06 55.8 39 61.5
TAR626G1100 Trochodendron aralioides HOM05D000140 ORTHO05D000087 4.5e-06 55.8 39 61.5
TAR383G0557 Trochodendron aralioides HOM05D000140 ORTHO05D000087 5.9e-06 55.5 39 61.5
VMungo1080G1433 Vigna mungo HOM05D000140 ORTHO05D000087 5.9e-06 55.5 38 60.5
HanXRQChr12g0360581 Helianthus annuus HOM05D000140 ORTHO05D000087 7.7e-06 55.1 39 61.5
Lj9C518T6 Lonicera japonica HOM05D000140 ORTHO05D000087 7.7e-06 55.1 39 61.5
Psat4g199720 Pisum sativum HOM05D000140 ORTHO05D000087 7.7e-06 55.1 40 60.0


User provided reference genes

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