Gene: Ah.15g094180

General Information

Structural Information

  • Species Amaranthus hybridus
  • Gene Identifier Ah.15g094180
  • Transcript Identifier Ah.15g094180-v1.1.a1
  • Gene Type Coding gene
  • Location AmaHy_arrow1_Scaffold_15 : 5170717-5194779 : negative

Gene Family Information

  • ID HOM05D000140
  • #Genes/#Species 2610/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Ah.15g094180-v1.1.a1

Descriptions

  • Description DEAD-box ATP-dependent RNA helicase 20 (EC 3.6.4.13)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc12g044860.3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004553
IEA
InterProhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0030246
IEA
InterProcarbohydrate binding
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc12g044860.3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G55150

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017853 Glycoside hydrolase superfamily
IPR001944 Glycoside hydrolase, family 35
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR043159 D-galactoside/L-rhamnose binding SUEL lectin domain superfamily
IPR041392 Beta-galactosidase, beta-sandwich domain
IPR011545 DEAD/DEAH box helicase domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR008979 Galactose-binding-like domain superfamily
IPR001650 Helicase, C-terminal
IPR031330 Glycoside hydrolase 35, catalytic domain
IPR000922 D-galactoside/L-rhamnose binding SUEL lectin domain
Mapman id Description
16.2.1.1.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).pre-mRNA splicing regulator (DDX5)