Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 0.0e+00 1263.8 633 100.0
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 6.8e-231 804.3 635 67.9
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 5.6e-217 758.1 643 64.2
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 1.0e-215 753.8 633 63.3
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 1.5e-206 723.4 642 62.1
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 3.4e-206 722.2 644 60.9
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.4e-204 716.1 644 61.2
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 1.0e-202 710.7 639 61.2
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 1.2e-200 703.7 638 59.4
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 1.1e-199 700.7 643 60.2
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 1.4e-199 700.3 631 59.6
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 3.4e-198 695.7 638 58.8
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 4.9e-197 691.8 638 58.5
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 1.4e-196 690.3 644 59.3
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 4.1e-196 688.7 651 58.8
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 7.1e-196 688.0 636 57.7
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 9.2e-196 687.6 636 57.7
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 1.2e-195 687.2 640 58.4
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 2.7e-195 686.0 641 59.0
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 6.0e-195 684.9 642 59.3
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 1.0e-194 684.1 637 57.9
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 1.0e-194 684.1 666 57.2
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 1.7e-194 683.3 642 58.3
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 2.3e-194 682.9 637 60.1
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 3.9e-194 682.2 646 57.9
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 5.1e-194 681.8 640 59.1
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 6.6e-194 681.4 657 56.9
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 1.9e-193 679.9 644 57.3
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 1.6e-192 676.8 644 58.2
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 2.1e-192 676.4 629 57.2
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 2.8e-192 676.0 635 56.5
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 3.6e-192 675.6 636 57.1
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 4.7e-192 675.2 638 57.8
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 4.7e-192 675.2 647 58.1
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 6.2e-192 674.9 633 58.1
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 1.8e-191 673.3 639 58.4
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 3.1e-191 672.5 635 58.3
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 5.2e-191 671.8 635 57.8
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 5.2e-191 671.8 638 57.7
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 1.2e-190 670.6 657 56.6
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 1.5e-190 670.2 635 56.4
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 2.6e-190 669.5 639 59.0
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 4.4e-190 668.7 608 59.7
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 1.3e-189 667.2 636 57.5
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 2.2e-189 666.4 637 57.9
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 1.1e-188 664.1 637 57.5
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 2.4e-188 662.9 642 57.8
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 3.2e-188 662.5 684 55.0
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 5.4e-188 661.8 637 57.9
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 1.6e-187 660.2 643 55.5
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 2.1e-187 659.8 635 57.5
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 2.7e-187 659.4 660 54.7
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 3.5e-187 659.1 637 57.1
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 3.5e-187 659.1 636 56.1
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 1.3e-186 657.1 635 57.8
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 1.7e-186 656.8 653 55.3
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 3.9e-186 655.6 642 56.7
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 5.1e-186 655.2 643 56.9
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 1.9e-185 653.3 630 56.2
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 3.3e-185 652.5 637 56.7
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 9.6e-185 651.0 637 56.5
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 9.6e-185 651.0 637 56.5
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 1.2e-184 650.6 638 55.3
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 2.8e-184 649.4 642 55.5
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 2.8e-184 649.4 637 56.5
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 3.6e-184 649.0 639 58.1
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 6.2e-184 648.3 616 57.0
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 1.2e-182 644.0 642 57.0
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 1.5e-182 643.7 666 54.7
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 5.8e-182 641.7 650 54.9
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 4.9e-181 638.6 630 55.9
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 1.4e-180 637.1 634 55.8
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.9e-180 636.7 650 56.3
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 3.2e-180 636.0 619 55.6
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 7.1e-180 634.8 694 52.9
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 6.0e-179 631.7 619 55.1
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 2.3e-178 629.8 662 52.9
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.1e-175 620.9 663 52.6
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 3.5e-171 605.9 643 52.4
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 6.0e-171 605.1 638 50.3
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 6.6e-170 601.7 634 53.3
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 9.6e-169 597.8 617 54.8
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 5.8e-166 588.6 641 54.8
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 9.9e-166 587.8 591 54.1
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 2.7e-163 579.7 658 49.1
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 3.5e-163 579.3 680 51.5
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.3e-162 577.4 550 58.4
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 1.1e-161 574.3 577 55.6
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.9e-161 573.5 659 50.5
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 4.3e-161 572.4 460 65.4
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 1.4e-159 567.4 576 55.2
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 2.4e-159 566.6 663 47.8
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 1.5e-158 563.9 612 55.1
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 2.7e-155 553.1 521 59.1
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 2.5e-153 546.6 565 52.7
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 3.2e-148 529.6 636 48.0
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.2e-142 511.1 633 47.7
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 3.6e-139 499.6 650 46.6
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 4.2e-132 476.1 525 51.8
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 3.6e-131 473.0 628 43.0
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 2.0e-129 467.2 381 65.6
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 6.5e-125 452.2 654 41.9
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 1.1e-121 441.4 372 62.1
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.7e-117 427.6 371 60.1
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 8.0e-115 418.7 564 43.3
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 1.8e-111 407.5 357 61.6
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 2.2e-109 400.6 630 42.9
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.8e-106 391.0 438 48.2
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 9.5e-100 368.6 417 47.0
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.4e-98 364.8 630 38.7
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 4.9e-96 356.3 392 53.1
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 1.0e-90 338.6 397 49.4
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.7e-86 323.9 313 54.0
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.2e-78 298.5 366 47.3
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 5.6e-76 289.7 282 55.7
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 1.1e-74 285.4 282 56.4
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 3.4e-73 280.4 275 57.5
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 4.1e-71 273.5 286 53.1
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 1.2e-67 261.9 636 29.9
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 2.0e-65 254.6 589 31.4
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 9.3e-63 245.7 591 31.5
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 3.0e-61 240.7 271 51.3
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 8.7e-61 239.2 284 50.7
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 5.6e-60 236.5 278 48.6
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.3e-56 225.3 409 33.7
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 1.7e-56 224.9 263 49.0
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 3.8e-56 223.8 112 92.9
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 2.1e-54 218.0 408 33.8
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 2.9e-48 197.6 236 48.7
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.9e-45 187.2 238 49.2
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 9.3e-39 166.0 93 84.9
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.5e-33 148.7 493 25.6
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 7.9e-30 136.3 82 75.6
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 3.0e-29 134.4 449 23.8
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 9.7e-28 129.4 207 38.6
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 3.7e-27 127.5 663 24.0
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 3.2e-23 114.4 99 58.6
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 2.8e-19 101.3 62 74.2
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 4.5e-17 94.0 205 31.7
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 9.4e-15 86.3 55 72.7
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.0e-13 81.3 59 61.0
SGA_v2.0_scaffold69G23265 Striga asiatica HOM05D000169 ORTHO05D001214 3.5e-09 67.8 42 73.8
RcHm_v2.0_Chr4g0401081 Rosa chinensis HOM05D005206 ORTHO05D006219 3.8e-08 64.3 45 66.7
SGA_v2.0_scaffold69G23269 Striga asiatica HOM05D000169 ORTHO05D000265 6.5e-08 63.5 41 68.3


User provided reference genes

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