Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 0.0e+00 1748.0 948 100.0
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 6.5e-312 1073.5 959 65.7
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 1.3e-299 1033.1 978 60.2
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 2.9e-286 988.8 912 61.8
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 6.9e-280 967.6 913 62.2
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 1.4e-277 959.9 985 57.3
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 2.2e-270 936.0 906 59.1
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 2.1e-268 929.5 868 60.6
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 5.1e-267 924.9 906 58.6
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 3.3e-266 922.2 926 57.0
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 7.4e-266 921.0 905 58.2
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 1.3e-265 920.2 963 55.3
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.8e-265 919.1 1023 55.2
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 1.5e-263 913.3 874 60.0
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.6e-263 912.5 872 59.6
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 5.5e-261 904.8 867 59.5
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 7.2e-261 904.4 966 55.2
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 9.4e-261 904.0 962 57.5
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 3.6e-260 902.1 880 58.5
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 4.7e-260 901.7 965 54.7
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 1.4e-259 900.2 963 56.7
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 2.3e-259 899.4 979 56.0
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 2.0e-258 896.3 875 57.8
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 4.8e-257 891.7 999 55.0
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 2.4e-256 889.4 894 56.5
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 4.1e-256 888.6 970 54.0
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 7.0e-256 887.9 957 53.9
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 9.1e-256 887.5 968 53.7
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 1.2e-252 877.1 887 56.9
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 2.1e-252 876.3 946 55.1
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 9.7e-250 867.5 961 52.9
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 1.7e-249 866.7 956 55.3
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.7e-249 865.5 956 55.5
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 5.3e-248 861.7 923 55.8
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 9.1e-248 860.9 956 55.6
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.2e-247 860.5 965 54.3
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 2.0e-247 859.8 969 54.6
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 7.7e-247 857.8 956 53.2
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 1.3e-246 857.1 958 54.4
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 1.7e-246 856.7 973 53.8
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 5.0e-246 855.1 909 54.3
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.5e-245 852.8 956 55.4
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 3.2e-245 852.4 860 57.1
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 4.2e-245 852.0 969 53.8
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 7.2e-245 851.3 972 53.8
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 1.4e-243 847.0 914 54.8
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 5.7e-242 841.6 957 52.9
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 1.3e-241 840.5 911 54.8
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.2e-241 839.7 870 56.0
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 3.5e-239 832.4 959 51.9
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 7.7e-239 831.2 885 55.8
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 1.0e-238 830.9 960 53.6
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 2.9e-238 829.3 981 53.9
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 5.5e-237 825.1 959 52.8
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 1.2e-236 823.9 860 55.0
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 2.3e-235 819.7 823 57.6
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 4.0e-235 818.9 871 54.3
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 1.2e-234 817.4 961 52.1
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.3e-233 813.9 903 52.9
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 1.4e-232 810.4 968 51.7
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 1.4e-232 810.4 924 52.7
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 3.1e-232 809.3 805 58.5
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 9.1e-232 807.7 956 51.7
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 5.0e-230 802.0 966 51.9
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 1.1e-229 800.8 883 52.9
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 3.3e-229 799.3 846 55.3
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 7.2e-229 798.1 937 50.9
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 9.5e-229 797.7 959 52.8
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 8.9e-227 791.2 961 51.4
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 1.7e-225 786.9 955 52.0
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 3.7e-225 785.8 962 52.6
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 4.1e-224 782.3 919 51.8
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 9.2e-224 781.2 903 53.2
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.6e-220 770.4 950 49.2
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 2.1e-220 770.0 988 48.7
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 4.0e-219 765.8 886 51.6
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 1.4e-216 757.3 907 51.2
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 4.1e-216 755.7 962 51.0
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.0e-214 751.1 911 49.9
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 8.6e-214 748.0 971 50.6
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 2.1e-212 743.4 972 47.8
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 5.8e-210 735.3 993 49.4
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.6e-207 727.2 975 47.5
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 7.3e-205 718.4 800 52.0
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 8.1e-204 714.9 966 46.8
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 8.1e-204 714.9 966 46.8
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 2.3e-203 713.4 971 47.1
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 4.0e-203 712.6 607 63.1
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 1.5e-202 710.7 967 46.8
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 2.6e-202 709.9 955 46.9
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 9.9e-202 708.0 959 47.2
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 3.2e-200 703.0 993 45.4
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 1.2e-199 701.0 969 46.5
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 1.4e-195 687.6 966 46.8
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 3.1e-195 686.4 970 45.7
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 7.6e-194 681.8 977 45.5
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 9.9e-194 681.4 972 46.2
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 3.5e-191 672.9 477 73.4
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 4.6e-191 672.5 958 46.9
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 1.3e-188 664.5 979 44.3
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 8.1e-188 661.8 956 45.3
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 4.0e-187 659.4 722 54.2
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 2.2e-185 653.7 956 45.0
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.7e-182 644.0 867 46.4
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 8.1e-180 635.2 1002 41.2
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 9.9e-178 628.2 934 43.5
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 2.9e-177 626.7 972 44.5
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 2.7e-175 620.2 1005 41.6
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.2e-167 594.7 934 42.1
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 1.8e-166 590.9 1008 41.5
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 7.4e-165 585.5 489 63.2
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 6.9e-155 552.4 1025 38.5
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 4.8e-148 529.6 486 57.2
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 7.4e-141 505.8 860 40.0
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.7e-121 441.4 507 51.7
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 8.5e-121 439.1 480 56.9
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.5e-112 411.0 486 50.8
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 7.8e-106 389.4 678 37.6
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 7.1e-83 313.2 316 51.6
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 2.2e-76 291.6 446 41.0
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 3.8e-76 290.8 375 50.4
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 5.4e-75 287.0 388 49.0
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 2.3e-73 281.6 456 45.0
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 1.1e-72 279.3 431 41.3
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 8.4e-68 263.1 265 52.1
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 1.2e-66 259.2 430 40.7
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 1.1e-64 252.7 297 48.1
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 2.5e-64 251.5 170 72.9
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 2.9e-60 238.0 452 42.5
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 4.3e-56 224.2 592 29.6
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 1.1e-48 199.5 422 41.0
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 7.4e-48 196.8 943 24.7
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 5.9e-45 187.2 167 55.1
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 3.8e-28 131.3 217 41.9
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 1.4e-27 129.4 93 62.4
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 7.4e-24 117.1 151 49.7
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 2.2e-23 115.5 151 49.7
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 1.3e-20 106.3 77 66.2
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.8e-17 95.9 89 53.9
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 3.0e-17 95.1 92 53.3
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 4.4e-16 91.3 65 67.7
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.2e-10 73.2 92 52.2
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 3.6e-10 71.6 82 47.6
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 8.0e-10 70.5 90 48.9
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.3e-09 68.9 37 78.4
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 2.0e-08 65.9 142 38.0
TPR.G37907 Trifolium pratense HOM05D004199 ORTHO05D411047 2.8e-07 62.0 57 56.1
AagrBONN_evm.TU.Sc2ySwM_368.453 Anthoceros agrestis HOM05D030179 ORTHO05D026588 3.7e-07 61.6 47 57.4


User provided reference genes

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