Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 7.7e-135 483.8 242 100.0
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 2.2e-97 359.4 195 92.8
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 6.4e-89 331.3 237 73.8
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 8.4e-89 330.9 184 88.0
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 3.2e-88 328.9 199 83.4
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 2.7e-87 325.9 185 86.5
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 4.6e-87 325.1 199 84.4
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 6.0e-87 324.7 185 86.5
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 6.0e-87 324.7 184 87.0
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 6.0e-87 324.7 202 82.2
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 1.0e-86 323.9 183 86.3
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 1.0e-86 323.9 185 85.4
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 1.3e-86 323.6 195 82.6
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 3.9e-86 322.0 215 76.3
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 3.9e-86 322.0 199 80.4
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 3.9e-86 322.0 195 82.1
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.1e-85 320.5 213 78.4
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 3.3e-85 318.9 191 82.7
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 3.3e-85 318.9 238 71.8
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 4.3e-85 318.5 189 82.5
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 4.3e-85 318.5 241 71.0
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 4.3e-85 318.5 195 82.6
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 5.6e-85 318.2 218 75.2
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 5.6e-85 318.2 164 92.1
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.6e-84 316.6 188 82.4
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 2.1e-84 316.2 236 71.2
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 2.1e-84 316.2 191 81.7
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 2.8e-84 315.8 202 77.7
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 2.8e-84 315.8 226 73.9
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 6.2e-84 314.7 184 82.6
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 6.2e-84 314.7 190 82.6
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 8.1e-84 314.3 216 75.5
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 1.1e-83 313.9 192 80.7
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 1.4e-83 313.5 188 83.0
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.4e-83 313.5 188 83.0
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 1.8e-83 313.2 190 82.6
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 1.8e-83 313.2 185 85.4
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 2.4e-83 312.8 164 90.9
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 3.1e-83 312.4 182 85.7
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 4.0e-83 312.0 177 85.9
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.0e-83 312.0 197 80.2
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 4.0e-83 312.0 184 83.7
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 4.0e-83 312.0 191 81.2
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 5.3e-83 311.6 216 73.6
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 5.3e-83 311.6 216 76.9
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 5.3e-83 311.6 188 80.9
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 6.9e-83 311.2 236 70.3
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.9e-83 311.2 184 83.2
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 6.9e-83 311.2 193 81.3
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.2e-82 310.5 188 81.4
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 1.2e-82 310.5 235 67.7
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 2.0e-82 309.7 164 90.2
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 2.0e-82 309.7 167 89.2
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 3.4e-82 308.9 191 80.1
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 4.4e-82 308.5 184 82.1
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 5.8e-82 308.1 190 81.1
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.8e-82 308.1 236 68.6
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 5.8e-82 308.1 236 68.6
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 5.8e-82 308.1 234 69.2
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 5.8e-82 308.1 191 78.0
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 9.9e-82 307.4 210 73.8
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 9.9e-82 307.4 255 65.1
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 1.3e-81 307.0 229 69.9
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 1.3e-81 307.0 192 78.6
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.7e-81 306.6 184 81.5
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 2.9e-81 305.8 161 88.8
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 2.9e-81 305.8 190 78.9
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 4.9e-81 305.1 170 85.3
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 6.4e-81 304.7 174 86.2
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 8.4e-81 304.3 211 73.0
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.1e-80 303.9 183 80.3
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 1.1e-80 303.9 191 78.0
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 1.4e-80 303.5 228 67.5
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 1.4e-80 303.5 226 69.9
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 1.9e-80 303.1 177 81.4
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.4e-80 302.8 177 81.9
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 3.2e-80 302.4 199 77.4
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 3.2e-80 302.4 191 78.0
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 4.2e-80 302.0 222 70.7
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 5.4e-80 301.6 181 82.9
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 5.4e-80 301.6 177 81.9
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 7.1e-80 301.2 223 69.1
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 9.3e-80 300.8 186 80.1
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 1.2e-79 300.4 186 79.6
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 1.6e-79 300.1 222 69.4
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 1.6e-79 300.1 185 78.9
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 1.6e-79 300.1 185 78.9
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 1.6e-79 300.1 177 80.2
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 2.1e-79 299.7 186 79.6
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 2.1e-79 299.7 186 79.6
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 2.7e-79 299.3 177 80.8
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 4.6e-79 298.5 162 87.0
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 4.6e-79 298.5 239 66.5
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 6.0e-79 298.1 199 75.9
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 6.0e-79 298.1 238 64.3
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 1.3e-78 297.0 182 79.7
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 3.0e-78 295.8 186 79.0
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 3.0e-78 295.8 171 86.0
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.9e-78 295.4 198 75.3
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 5.1e-78 295.0 240 64.6
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 6.6e-78 294.7 163 85.9
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 6.6e-78 294.7 166 83.7
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 8.7e-78 294.3 195 77.4
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 8.7e-78 294.3 195 77.4
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 1.5e-77 293.5 194 77.3
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 1.9e-77 293.1 184 78.3
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 3.6e-76 288.9 152 86.8
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.2e-74 283.9 191 77.0
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 1.9e-72 276.6 181 72.9
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 1.0e-70 270.8 190 72.1
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 9.6e-69 264.2 151 84.8
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 1.6e-68 263.5 228 61.4
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 1.5e-66 256.9 206 65.5
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 4.9e-65 251.9 182 65.9
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 2.5e-64 249.6 215 65.1
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 7.1e-64 248.1 199 65.8
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.0e-62 244.2 195 66.7
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.1e-61 240.7 177 70.1
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 6.2e-60 235.0 200 59.5
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.4e-56 223.8 166 70.5
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 4.6e-55 218.8 122 86.1
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 1.4e-48 197.2 112 82.1
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 8.8e-46 188.0 145 64.8
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 1.3e-44 184.1 137 70.1
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.7e-44 183.7 118 77.1
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 1.2e-42 177.6 112 79.5
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 5.9e-42 175.3 106 79.2
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 2.9e-41 172.9 136 65.4
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 5.7e-37 158.7 104 74.0
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 7.4e-37 158.3 104 73.1
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 6.1e-31 138.7 78 88.5
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.8e-30 137.1 116 63.8
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 2.0e-29 133.7 124 58.9
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 2.6e-29 133.3 150 41.3
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 1.3e-28 131.0 78 82.1
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.6e-26 124.0 75 82.7
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 5.9e-26 122.1 71 88.7
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 4.4e-21 105.9 77 72.7
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 4.5e-18 95.9 74 66.2
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.2e-15 87.8 49 81.6
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 8.8e-14 81.6 92 51.1
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 5.0e-09 65.9 47 63.8
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 5.0e-09 65.9 42 71.4
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 1.6e-07 60.8 28 89.3
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 1.6e-07 60.8 28 89.3
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 2.8e-07 60.1 102 39.2


User provided reference genes

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