Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 7.1e-127 457.2 223 100.0
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 1.7e-83 313.2 224 67.4
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 3.7e-75 285.4 186 77.4
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 1.8e-69 266.5 223 57.8
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 1.8e-69 266.5 223 59.2
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 4.0e-69 265.4 223 58.3
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 1.2e-68 263.8 221 60.2
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.5e-68 263.5 221 57.9
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 3.4e-68 262.3 237 57.0
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 3.4e-68 262.3 237 57.0
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 4.4e-68 261.9 223 57.8
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.8e-68 260.8 221 57.0
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.9e-67 259.2 224 57.6
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 3.2e-66 255.8 257 50.6
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 2.0e-65 253.1 223 56.5
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 2.7e-65 252.7 223 56.5
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 3.5e-65 252.3 222 56.3
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 1.0e-64 250.8 217 56.2
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 1.7e-64 250.0 221 54.3
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 6.6e-64 248.1 221 56.1
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 8.6e-64 247.7 221 53.8
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 1.1e-63 247.3 223 56.1
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 4.3e-63 245.4 223 53.8
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 7.3e-63 244.6 221 53.4
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 1.2e-62 243.8 222 54.5
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 4.0e-61 238.8 257 49.0
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 6.8e-61 238.0 224 53.6
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 8.9e-61 237.7 258 49.6
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 8.9e-61 237.7 221 53.8
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 4.4e-60 235.3 221 52.9
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 1.3e-59 233.8 229 51.5
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 2.2e-59 233.0 221 51.1
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 2.2e-59 233.0 224 54.5
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 4.9e-59 231.9 207 57.0
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 8.3e-59 231.1 228 50.9
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.4e-58 230.3 229 50.7
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 1.4e-58 230.3 232 52.6
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 1.4e-58 230.3 281 45.6
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 1.9e-58 229.9 224 53.1
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 2.4e-58 229.6 229 50.2
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 5.4e-58 228.4 222 50.0
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 9.2e-58 227.6 221 52.0
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.2e-57 227.3 229 49.8
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 1.2e-57 227.3 222 51.8
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.6e-57 226.9 223 50.2
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 1.6e-57 226.9 223 52.5
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 1.6e-57 226.9 229 50.7
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 2.0e-57 226.5 223 50.2
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 3.5e-57 225.7 223 50.7
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 3.5e-57 225.7 206 55.8
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 3.5e-57 225.7 230 50.0
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 6.0e-57 224.9 223 51.6
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.3e-56 223.8 223 51.1
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 1.3e-56 223.8 223 50.7
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.7e-56 223.4 223 51.1
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 3.0e-56 222.6 225 51.6
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 5.0e-56 221.9 228 49.6
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 8.6e-56 221.1 222 50.5
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 3.3e-55 219.2 222 49.5
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 5.6e-55 218.4 223 51.6
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 5.6e-55 218.4 235 48.9
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 5.6e-55 218.4 235 48.9
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 5.6e-55 218.4 223 49.8
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 7.3e-55 218.0 228 48.7
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 1.2e-54 217.2 222 50.0
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 1.2e-54 217.2 222 50.0
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 1.2e-54 217.2 222 50.0
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 2.8e-54 216.1 224 50.0
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 3.6e-54 215.7 232 48.7
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 1.8e-53 213.4 235 48.5
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 3.1e-53 212.6 222 48.6
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 4.0e-53 212.2 235 48.5
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 5.2e-53 211.8 223 50.2
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 6.8e-53 211.5 221 48.4
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 6.8e-53 211.5 236 47.5
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 6.8e-53 211.5 212 50.9
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 1.2e-52 210.7 228 48.2
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 2.0e-52 209.9 228 47.4
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 4.4e-52 208.8 203 53.7
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 7.5e-52 208.0 227 47.1
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 2.2e-51 206.5 220 49.1
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 3.7e-51 205.7 221 48.0
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 2.4e-50 203.0 221 47.1
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 2.4e-50 203.0 223 48.4
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 4.1e-50 202.2 223 49.3
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 9.2e-50 201.1 251 43.0
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 3.5e-49 199.1 221 47.5
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 3.5e-49 199.1 223 47.5
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 3.9e-48 195.7 209 47.8
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 3.9e-48 195.7 207 50.2
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 5.1e-48 195.3 221 47.1
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 6.6e-48 194.9 219 50.2
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 6.6e-48 194.9 184 49.5
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 5.6e-47 191.8 223 46.2
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 5.6e-47 191.8 221 46.2
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 9.5e-47 191.0 221 45.7
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 4.7e-46 188.7 221 46.2
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 6.2e-46 188.3 239 43.5
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 5.2e-45 185.3 221 47.1
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 5.8e-44 181.8 221 42.1
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 2.2e-43 179.9 221 39.8
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 2.9e-43 179.5 221 41.6
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 4.9e-43 178.7 178 52.2
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 7.1e-42 174.9 187 48.7
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 3.5e-41 172.6 221 43.9
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.0e-40 171.0 222 42.8
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 4.3e-39 165.6 155 56.1
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 8.1e-38 161.4 171 49.7
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 7.6e-36 154.8 147 53.1
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 2.2e-35 153.3 224 37.5
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 9.3e-34 147.9 221 40.7
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.3e-32 143.3 104 65.4
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 8.7e-32 141.4 144 50.7
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.5e-31 140.6 151 47.0
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.1e-29 134.4 103 63.1
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 1.4e-29 134.0 227 36.1
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 1.4e-29 134.0 98 66.3
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 1.2e-28 131.0 94 67.0
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.2e-28 131.0 107 59.8
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 2.9e-27 126.3 98 61.2
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.1e-26 124.4 98 65.3
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 6.0e-25 118.6 130 49.2
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 1.3e-24 117.5 164 39.6
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 5.1e-24 115.5 228 34.6
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 4.3e-23 112.5 158 40.5
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.3e-22 110.9 150 43.3
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.6e-22 110.5 163 42.3
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 1.8e-21 107.1 105 45.7
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 6.9e-21 105.1 70 70.0
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 7.6e-20 101.7 75 70.7
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 4.2e-18 95.9 68 69.1
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.0e-17 92.0 64 64.1
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 1.1e-13 81.3 74 51.4
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 1.4e-13 80.9 57 63.2
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 2.6e-12 76.6 71 49.3
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 4.5e-12 75.9 85 42.4
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 7.6e-12 75.1 117 34.2
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.9e-11 72.4 72 44.4
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 8.4e-11 71.6 134 34.3
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 1.1e-10 71.2 109 40.4
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 7.1e-10 68.6 112 38.4
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 1.2e-09 67.8 61 52.5
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 3.3e-07 59.7 49 59.2
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 5.7e-07 58.9 60 51.7
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 7.4e-07 58.5 49 57.1
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-06 57.8 55 47.3
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 3.7e-06 56.2 146 28.8


User provided reference genes

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