Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 1.1e-159 566.6 301 100.0
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 3.8e-139 498.4 301 87.0
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 2.4e-138 495.7 301 88.0
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 5.1e-136 488.0 301 85.0
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 4.9e-131 471.5 301 81.4
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 1.9e-130 469.5 301 80.7
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 9.3e-130 467.2 303 81.5
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 2.7e-129 465.7 299 80.6
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 5.1e-128 461.5 299 79.6
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 5.1e-128 461.5 301 79.4
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 5.1e-128 461.5 301 81.4
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 6.7e-128 461.1 300 80.7
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 1.1e-127 460.3 301 79.4
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.3e-126 456.8 301 80.4
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 2.1e-126 456.1 304 79.3
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 2.1e-126 456.1 302 79.5
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.8e-126 455.7 299 80.6
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 4.8e-126 454.9 301 79.1
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 6.2e-126 454.5 301 77.1
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 6.2e-126 454.5 304 78.9
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.4e-125 453.4 304 78.3
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.0e-125 451.8 304 78.6
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.0e-125 451.8 304 78.6
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 5.3e-125 451.4 300 77.0
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.2e-124 450.3 304 78.3
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 2.0e-124 449.5 302 78.1
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 4.5e-124 448.4 302 79.1
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 4.5e-124 448.4 301 78.7
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 7.6e-124 447.6 304 78.0
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 3.8e-123 445.3 304 77.3
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 4.9e-123 444.9 304 77.3
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 8.4e-123 444.1 300 78.0
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 8.4e-123 444.1 306 75.5
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 3.2e-122 442.2 304 76.6
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 4.2e-122 441.8 302 76.5
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 5.5e-122 441.4 304 79.3
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 5.5e-122 441.4 300 79.0
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 7.1e-122 441.0 296 79.1
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 7.1e-122 441.0 302 75.5
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 7.1e-122 441.0 304 76.0
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 9.3e-122 440.7 302 77.8
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 9.3e-122 440.7 303 77.6
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.2e-121 440.3 304 75.3
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 1.2e-121 440.3 283 80.9
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 2.1e-121 439.5 306 75.8
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.7e-121 439.1 304 77.6
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 2.7e-121 439.1 302 77.5
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 2.7e-121 439.1 302 76.5
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 7.9e-121 437.6 305 78.0
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 1.3e-120 436.8 305 76.7
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 1.8e-120 436.4 306 76.5
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 1.8e-120 436.4 301 78.1
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 6.7e-120 434.5 301 77.1
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 8.7e-120 434.1 301 75.4
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 1.1e-119 433.7 303 75.9
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.1e-119 433.7 303 75.9
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 1.1e-119 433.7 304 76.3
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 1.1e-119 433.7 303 75.2
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.5e-119 433.3 302 75.8
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.9e-119 433.0 304 76.3
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.9e-119 433.0 302 76.2
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.9e-119 433.0 302 76.2
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 1.9e-119 433.0 304 77.0
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 3.3e-119 432.2 301 75.4
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.3e-118 430.3 303 75.6
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 1.6e-118 429.9 301 75.4
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 2.8e-118 429.1 305 75.1
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 2.8e-118 429.1 301 76.7
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 3.7e-118 428.7 302 74.5
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 3.7e-118 428.7 302 75.5
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 3.7e-118 428.7 304 75.3
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.7e-118 428.7 301 76.4
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 6.3e-118 427.9 304 74.7
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.1e-117 427.2 302 74.8
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.8e-117 426.4 302 74.5
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 3.1e-117 425.6 302 73.8
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 4.1e-117 425.2 303 74.9
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 1.2e-116 423.7 301 76.1
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 2.0e-116 422.9 301 74.1
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.7e-115 419.9 301 72.8
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 2.2e-115 419.5 310 71.6
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 3.8e-115 418.7 301 74.1
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 3.8e-115 418.7 305 73.1
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 5.0e-115 418.3 306 73.9
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 5.0e-115 418.3 306 73.9
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 5.0e-115 418.3 306 73.9
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 6.5e-115 417.9 307 74.3
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 4.2e-114 415.2 303 72.3
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 5.5e-114 414.8 301 73.4
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.6e-113 412.1 301 71.8
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.0e-112 410.6 295 72.5
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 1.1e-111 407.1 303 71.9
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 1.5e-111 406.8 301 71.4
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 3.3e-111 405.6 301 71.1
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 5.7e-111 404.8 302 70.5
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 9.7e-111 404.1 302 70.9
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 4.8e-110 401.7 302 71.5
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 6.3e-110 401.4 305 70.2
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.4e-109 400.2 301 70.4
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.4e-109 400.2 301 70.4
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.4e-109 400.2 301 70.4
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 5.3e-109 398.3 304 70.4
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 5.3e-109 398.3 301 70.8
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 1.2e-108 397.1 303 71.0
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.6e-108 396.0 302 70.9
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 7.7e-108 394.4 303 69.6
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 3.8e-107 392.1 303 69.3
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 4.2e-106 388.7 303 70.6
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 4.2e-106 388.7 301 68.8
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 5.5e-106 388.3 298 71.5
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 1.3e-102 377.1 298 68.1
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 2.2e-102 376.3 312 64.7
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.5e-100 368.6 280 72.1
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 2.0e-95 353.2 309 63.8
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.3e-94 350.5 301 62.5
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 5.3e-93 345.1 288 67.4
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 3.8e-91 339.0 319 58.0
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.8e-88 330.1 302 57.9
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 8.8e-88 327.8 195 81.5
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.1e-81 306.6 251 67.3
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 2.6e-79 299.7 297 55.6
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.4e-77 293.9 193 77.2
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.8e-77 293.5 302 54.0
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 2.0e-76 290.0 251 62.5
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 2.2e-70 270.0 301 55.8
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.1e-65 253.4 134 92.5
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 5.8e-63 245.4 300 48.7
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 4.6e-60 235.7 197 68.0
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 7.3e-58 228.4 274 52.6
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 1.6e-52 210.7 190 62.6
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 8.6e-51 204.9 204 56.4
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 3.7e-46 189.5 310 43.5
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 6.0e-44 182.2 167 65.3
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.1e-42 177.9 193 54.4
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 2.1e-41 173.7 191 49.7
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 2.1e-41 173.7 229 47.6
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 2.8e-41 173.3 290 40.0
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 3.8e-38 162.9 110 76.4
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.1e-37 161.4 192 49.5
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 2.4e-37 160.2 104 75.0
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 3.6e-33 146.4 175 47.4
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 4.9e-30 136.0 83 75.9
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 6.0e-28 129.0 219 42.9
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 3.2e-21 106.7 58 82.8
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 7.1e-21 105.5 86 65.1
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 3.5e-20 103.2 61 77.0
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 5.6e-18 95.9 100 58.0
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 5.6e-18 95.9 64 70.3
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 2.0e-15 87.4 301 30.2
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 2.6e-15 87.0 301 30.6
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 1.7e-14 84.3 114 46.5
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.9e-13 80.9 113 47.8
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 4.6e-12 76.3 96 46.9
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 1.6e-09 67.8 95 47.4
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 2.6e-07 60.5 81 50.6
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 1.7e-06 57.8 52 61.5


User provided reference genes

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