Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 4.2e-53 211.1 105 100.0
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 4.1e-48 194.5 105 91.4
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 8.2e-25 117.1 86 66.3
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 6.5e-22 107.5 85 64.7
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 1.1e-21 106.7 85 63.5
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 1.1e-21 106.7 85 64.7
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 1.9e-21 105.9 85 63.5
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 3.2e-21 105.1 85 63.5
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 3.2e-21 105.1 85 62.4
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 4.2e-21 104.8 85 63.5
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 5.5e-21 104.4 85 63.5
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 5.5e-21 104.4 85 63.5
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 7.2e-21 104.0 85 62.4
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 7.2e-21 104.0 90 58.9
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 7.2e-21 104.0 90 58.9
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 7.2e-21 104.0 85 62.4
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 1.2e-20 103.2 85 63.5
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 1.2e-20 103.2 85 62.4
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 1.2e-20 103.2 85 61.2
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 1.6e-20 102.8 85 61.2
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 2.1e-20 102.4 85 61.2
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 2.1e-20 102.4 85 62.4
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 2.1e-20 102.4 85 60.0
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 2.7e-20 102.1 85 58.8
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 2.7e-20 102.1 85 62.4
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 2.7e-20 102.1 85 62.4
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 2.7e-20 102.1 85 58.8
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 2.7e-20 102.1 85 58.8
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 2.7e-20 102.1 85 63.5
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 3.6e-20 101.7 85 60.0
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 3.6e-20 101.7 85 58.8
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 3.6e-20 101.7 85 58.8
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 3.6e-20 101.7 85 58.8
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 4.7e-20 101.3 85 61.2
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 4.7e-20 101.3 85 60.0
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 4.7e-20 101.3 85 60.0
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 4.7e-20 101.3 85 58.8
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 4.7e-20 101.3 85 60.0
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 4.7e-20 101.3 85 60.0
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 4.7e-20 101.3 85 57.6
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 6.1e-20 100.9 84 58.3
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 6.1e-20 100.9 85 57.6
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 6.1e-20 100.9 85 58.8
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 6.1e-20 100.9 85 58.8
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 6.1e-20 100.9 85 60.0
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 6.1e-20 100.9 85 60.0
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 6.1e-20 100.9 85 60.0
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 8.0e-20 100.5 85 58.8
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 8.0e-20 100.5 85 57.6
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 8.0e-20 100.5 85 57.6
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 8.0e-20 100.5 85 58.8
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 1.0e-19 100.1 85 61.2
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 1.0e-19 100.1 85 57.6
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 1.0e-19 100.1 85 60.0
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 1.0e-19 100.1 85 62.4
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 1.4e-19 99.8 85 58.8
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 1.4e-19 99.8 85 57.6
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 1.4e-19 99.8 85 57.6
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 1.4e-19 99.8 85 58.8
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 1.8e-19 99.4 85 58.8
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 1.8e-19 99.4 85 56.5
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 1.8e-19 99.4 85 60.0
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 1.8e-19 99.4 85 57.6
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 2.3e-19 99.0 85 60.0
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 2.3e-19 99.0 85 58.8
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 3.0e-19 98.6 85 56.5
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 4.0e-19 98.2 85 57.6
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 4.0e-19 98.2 85 57.6
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 5.2e-19 97.8 85 57.6
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 5.2e-19 97.8 85 58.8
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 5.2e-19 97.8 85 57.6
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 6.8e-19 97.4 85 57.6
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 6.8e-19 97.4 85 60.0
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 6.8e-19 97.4 85 56.5
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 6.8e-19 97.4 85 56.5
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 8.8e-19 97.1 85 57.6
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 8.8e-19 97.1 90 55.6
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 1.2e-18 96.7 85 57.6
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 1.2e-18 96.7 85 56.5
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 1.2e-18 96.7 85 55.3
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 1.5e-18 96.3 85 55.3
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 2.0e-18 95.9 85 56.5
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 2.0e-18 95.9 85 57.6
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 2.6e-18 95.5 90 56.7
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 2.6e-18 95.5 85 56.5
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 3.4e-18 95.1 85 56.5
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 3.4e-18 95.1 85 55.3
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 5.7e-18 94.4 85 55.3
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 7.5e-18 94.0 85 55.3
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 7.5e-18 94.0 85 54.1
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 9.8e-18 93.6 83 57.8
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 9.8e-18 93.6 85 55.3
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 9.8e-18 93.6 85 56.5
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 9.8e-18 93.6 85 55.3
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 9.8e-18 93.6 85 54.1
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 9.8e-18 93.6 85 52.9
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 1.3e-17 93.2 85 54.1
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 1.7e-17 92.8 85 55.3
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 1.7e-17 92.8 86 54.7
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 1.7e-17 92.8 85 52.9
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 1.7e-17 92.8 85 55.3
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 1.7e-17 92.8 85 55.3
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 2.2e-17 92.4 85 55.3
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 2.2e-17 92.4 85 55.3
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 2.8e-17 92.0 85 55.3
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 2.8e-17 92.0 85 55.3
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 2.8e-17 92.0 84 54.8
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 2.8e-17 92.0 86 55.8
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 3.7e-17 91.7 85 56.5
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 6.3e-17 90.9 85 52.9
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 6.3e-17 90.9 85 54.1
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 6.3e-17 90.9 85 55.3
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 8.3e-17 90.5 85 54.1
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 1.1e-16 90.1 85 55.3
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 1.8e-16 89.4 85 51.8
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 1.8e-16 89.4 85 51.8
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 1.8e-16 89.4 85 51.8
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 1.8e-16 89.4 85 51.8
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 1.8e-16 89.4 69 66.7
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 4.1e-16 88.2 85 54.1
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 2.7e-15 85.5 92 51.1
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 1.3e-14 83.2 86 48.8
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 2.2e-14 82.4 90 46.7
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 2.9e-14 82.0 85 48.2
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 5.0e-14 81.3 78 50.0
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 1.9e-13 79.3 86 47.7
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 3.2e-13 78.6 84 47.6
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 9.5e-13 77.0 91 45.1
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 2.7e-12 75.5 90 45.6
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 1.0e-11 73.6 85 42.4
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 1.0e-11 73.6 90 42.2
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 1.8e-11 72.8 83 48.2
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 3.4e-10 68.6 90 37.8
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 6.3e-09 64.3 67 43.3
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 1.2e-07 60.1 58 51.7
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 2.0e-07 59.3 49 49.0
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 2.7e-07 58.9 68 41.2
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 4.5e-07 58.2 70 40.0
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 2.9e-06 55.5 45 51.1


User provided reference genes

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