Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1221G53867 Striga asiatica HOM05D000113 ORTHO05D012125 1.9e-168 595.9 328 100.0
unitig_8.g2956 Utricularia gibba HOM05D000113 ORTHO05D002571 2.5e-51 206.8 190 60.0
Migut.D01678 Erythranthe guttata HOM05D000113 ORTHO05D002571 2.0e-45 187.2 192 59.4
Sopen03g034400 Solanum pennellii HOM05D000113 ORTHO05D002571 3.2e-43 179.9 195 56.4
Nitab4.5_0001410g0130 Nicotiana tabacum HOM05D000113 ORTHO05D002571 7.2e-43 178.7 194 54.1
Cfa019308 Carpinus fangiana HOM05D000113 ORTHO05D002571 1.2e-42 177.9 198 51.5
Haze_07691 Corylus avellana HOM05D000113 ORTHO05D002571 2.1e-42 177.2 210 50.5
Manes.13G073000 Manihot esculenta HOM05D000113 ORTHO05D002571 1.5e-40 171.0 210 46.2
ECA232G2775 Erigeron canadensis HOM05D000113 ORTHO05D002571 2.6e-40 170.2 192 53.1
Cc04_g15030 Coffea canephora HOM05D000113 ORTHO05D012125 8.5e-36 155.2 145 55.9
PGSC0003DMG402024649 Solanum tuberosum HOM05D000113 ORTHO05D002571 8.5e-36 155.2 195 53.3
TAR374G0746 Trochodendron aralioides HOM05D000113 ORTHO05D002571 8.5e-36 155.2 195 48.7
PSO013G0399 Papaver somniferum HOM05D000113 ORTHO05D012125 1.5e-35 154.5 191 48.2
TWI73G0006 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 1.9e-35 154.1 202 48.5
PSO063G4203 Papaver somniferum HOM05D000113 ORTHO05D002571 4.2e-35 152.9 193 46.1
Eucgr.K02504 Eucalyptus grandis HOM05D000113 ORTHO05D012125 5.5e-35 152.5 207 42.5
Oeu008272.2 Olea europaea HOM05D000113 ORTHO05D002571 5.5e-35 152.5 200 46.5
Lalb_Chr13g0294241 Lupinus albus HOM05D000113 ORTHO05D002571 6.1e-34 149.1 201 49.3
Glyma.01G040900 Glycine max HOM05D000113 ORTHO05D002571 1.0e-33 148.3 188 48.4
PGSC0003DMG401024649 Solanum tuberosum HOM05D000113 ORTHO05D012125 1.0e-33 148.3 139 57.6
PSO409G0035 Papaver somniferum HOM05D000113 ORTHO05D002571 2.3e-33 147.1 193 45.1
Solyc03g115400.2 Solanum lycopersicum HOM05D000113 ORTHO05D012125 3.0e-33 146.7 139 59.0
Dinv38794 Davidia involucrata HOM05D000113 ORTHO05D002571 4.4e-32 142.9 196 50.0
CAN.G479.26 Capsicum annuum HOM05D000113 ORTHO05D012125 7.5e-32 142.1 139 56.8
AL4G31370 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 2.8e-31 140.2 192 44.8
CARHR031940 Cardamine hirsuta HOM05D000113 ORTHO05D002571 2.8e-31 140.2 192 47.4
AL1G46740 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 8.3e-31 138.7 192 42.2
SalBow7G4123 Salvia bowleyana HOM05D000113 ORTHO05D002571 8.3e-31 138.7 197 50.3
AT1G32490 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 1.8e-30 137.5 192 42.7
AT2G35340 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 5.4e-30 136.0 191 46.1
Carub.0001s3090 Capsella rubella HOM05D000113 ORTHO05D002571 5.4e-30 136.0 192 47.4
MELO3C017216.2 Cucumis melo HOM05D000113 ORTHO05D002571 9.1e-30 135.2 192 51.6
Ca_13800_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 2.0e-29 134.0 193 43.0
PGR044G1093 Punica granatum HOM05D000113 ORTHO05D002571 2.0e-29 134.0 201 40.3
Sp1g28410 Schrenkiella parvula HOM05D000113 ORTHO05D002571 2.0e-29 134.0 192 46.9
CsaV3_1G002800 Cucumis sativus L. HOM05D000113 ORTHO05D002571 3.5e-29 133.3 194 53.1
Gohir.A12G181200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 7.7e-29 132.1 197 41.6
Gohir.D12G183900 Gossypium hirsutum HOM05D000113 ORTHO05D002571 7.7e-29 132.1 197 42.1
Nitab4.5_0004284g0070 Nicotiana tabacum HOM05D000113 ORTHO05D002571 1.7e-28 131.0 187 48.7
Sed0009402 Sechium edule HOM05D000113 ORTHO05D002571 6.5e-28 129.0 188 47.9
Gorai.008G197200 Gossypium raimondii HOM05D000113 ORTHO05D002571 1.1e-27 128.3 197 45.2
GSVIVG01007911001 Vitis vinifera HOM05D000113 ORTHO05D002571 1.1e-27 128.3 100 60.0
Aqoxy3G03585 Aquilegia oxysepala HOM05D000113 ORTHO05D002571 2.5e-27 127.1 195 41.5
Glyma.06G201700 Glycine max HOM05D000113 ORTHO05D002571 5.5e-27 125.9 193 46.6
HPP92_010044 Vanilla planifolia HOM05D000113 ORTHO05D002571 5.5e-27 125.9 193 38.9
DCAR_021511 Daucus carota HOM05D000113 ORTHO05D002571 9.5e-27 125.2 192 45.3
Sabra15G0006800 Salix brachista HOM05D000113 ORTHO05D002571 1.2e-26 124.8 277 38.6
Thhalv10017881m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 2.1e-26 124.0 191 41.9
Prupe.5G201700 Prunus persica HOM05D000113 ORTHO05D002571 2.1e-26 124.0 193 40.9
Medtr1g010030 Medicago truncatula HOM05D000113 ORTHO05D002571 2.8e-26 123.6 198 41.4
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 4.7e-26 122.9 200 47.0
AUR62029968 Chenopodium quinoa HOM05D000113 ORTHO05D012125 8.0e-26 122.1 116 56.0
Sc10g0009750 Simmondsia chinensis HOM05D000113 ORTHO05D002571 8.0e-26 122.1 196 44.4
RcHm_v2.0_Chr7g0182681 Rosa chinensis HOM05D000113 ORTHO05D002571 1.0e-25 121.7 97 58.8
Hma1.2p1_0060F.1_g033270 Hydrangea macrophylla HOM05D000113 ORTHO05D002571 1.4e-25 121.3 97 60.8
Aa31LG7G3740 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.8e-25 120.9 195 42.6
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.8e-25 120.9 108 54.6
HanXRQChr10g0308651 Helianthus annuus HOM05D000113 ORTHO05D002571 2.3e-25 120.6 103 58.3
Duzib205G1857 Durio zibethinus HOM05D000113 ORTHO05D002571 4.0e-25 119.8 199 42.7
EL10Ac3g06248 Beta vulgaris HOM05D000113 ORTHO05D002571 5.2e-25 119.4 97 57.7
CiPaw.11G050600 Carya illinoinensis HOM05D000113 ORTHO05D002571 5.2e-25 119.4 97 57.7
Actinidia35027 Actinidia chinensis HOM05D000113 ORTHO05D002571 6.8e-25 119.0 104 54.8
Rhsim06G0025800 Rhododendron simsii HOM05D000113 ORTHO05D002571 6.8e-25 119.0 196 46.9
arahy.Tifrunner.gnm1.ann1.LUB4JJ Arachis hypogaea HOM05D000113 ORTHO05D002571 1.5e-24 117.9 196 39.3
CDE02G1559 Ceratophyllum demersum HOM05D000113 ORTHO05D002571 1.5e-24 117.9 190 45.8
Rhsim12G0152100 Rhododendron simsii HOM05D000113 ORTHO05D002571 2.6e-24 117.1 101 58.4
Nn2g13470 Nelumbo nucifera HOM05D000113 ORTHO05D002571 3.4e-24 116.7 100 58.0
Phvul.009G193400 Phaseolus vulgaris HOM05D000113 ORTHO05D002571 3.4e-24 116.7 96 61.5
Thecc.03G097900 Theobroma cacao HOM05D000113 ORTHO05D002571 4.4e-24 116.3 198 43.4
CSS0000469 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 7.5e-24 115.5 94 59.6
Lj1g0013131 Lotus japonicus HOM05D000113 ORTHO05D002571 7.5e-24 115.5 149 47.0
Lj6g0016007 Lotus japonicus HOM05D000113 ORTHO05D002571 9.8e-24 115.2 102 59.8
COL.COLO4_22215 Corchorus olitorius HOM05D000113 ORTHO05D002571 1.3e-23 114.8 189 43.4
vmacro16510 Vaccinium macrocarpon HOM05D000113 ORTHO05D002571 1.7e-23 114.4 200 38.5
AL7G28140 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 2.8e-23 113.6 191 38.2
SEGI_02990 Sequoiadendron giganteum HOM05D000113 ORTHO05D002571 2.8e-23 113.6 189 42.9
FAN18G0690 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.3e-23 112.5 192 40.1
Prupe.6G159800 Prunus persica HOM05D000113 ORTHO05D002571 8.3e-23 112.1 196 42.3
Aa31LG7G6920 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.1e-22 111.7 195 37.9
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.1e-22 111.7 192 47.4
FvH4_5g14240 Fragaria vesca HOM05D000113 ORTHO05D002571 1.4e-22 111.3 192 40.1
RcHm_v2.0_Chr2g0092491 Rosa chinensis HOM05D000113 ORTHO05D002571 1.4e-22 111.3 195 40.5
Psat0s3790g0040 Pisum sativum HOM05D000113 ORTHO05D002571 1.8e-22 110.9 95 58.9
TPR.G12156 Trifolium pratense HOM05D000113 ORTHO05D002571 1.8e-22 110.9 108 56.5
Lj5A105G62 Lonicera japonica HOM05D000113 ORTHO05D012125 7.0e-22 109.0 102 53.9
Aa31LG7G3630 Aethionema arabicum HOM05D000113 ORTHO05D002571 9.2e-22 108.6 125 47.2
Lsat_1_v5_gn_6_69341 Lactuca sativa HOM05D000113 ORTHO05D002571 9.2e-22 108.6 194 38.1
THA.LOC104812747 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 2.0e-21 107.5 97 52.6
Dinv22270 Davidia involucrata HOM05D000113 ORTHO05D002571 2.7e-21 107.1 101 54.5
BcaB03g13727 Brassica carinata HOM05D000113 ORTHO05D012125 4.5e-21 106.3 191 44.0
BcaC05g27851 Brassica carinata HOM05D000113 ORTHO05D002571 4.5e-21 106.3 193 45.6
C05p38490 Brassica napus HOM05D000113 ORTHO05D002571 4.5e-21 106.3 193 45.6
BolC5t32583H Brassica oleracea HOM05D000113 ORTHO05D002571 4.5e-21 106.3 193 45.6
A05p24800 Brassica napus HOM05D000113 ORTHO05D002571 1.0e-20 105.1 193 45.1
BraA05t21363Z Brassica rapa HOM05D000113 ORTHO05D002571 1.0e-20 105.1 193 45.1
HanXRQChr12g0377671 Helianthus annuus HOM05D000113 ORTHO05D012125 1.0e-20 105.1 206 36.4
FAN23G0734 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.3e-20 104.8 198 39.9
Potri.015G008700 Populus trichocarpa HOM05D000113 ORTHO05D002571 1.3e-20 104.8 202 41.1
Thhalv10006650m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 2.3e-20 104.0 192 34.9
Medtr3g023880 Medicago truncatula HOM05D000113 ORTHO05D002571 2.3e-20 104.0 95 54.7
VMungo1127G1561 Vigna mungo HOM05D000113 ORTHO05D002571 3.8e-20 103.2 93 57.0
Mapoly0054s0103 Marchantia polymorpha HOM05D000113 ORTHO05D002571 1.1e-19 101.7 188 34.0
Aa31LG2G13460 Aethionema arabicum HOM05D000113 ORTHO05D002571 4.3e-19 99.8 101 50.5
AUR62002552 Chenopodium quinoa HOM05D000113 ORTHO05D002571 7.3e-19 99.0 175 38.3
ATR0064G016 Amborella trichopoda HOM05D000113 ORTHO05D002571 1.6e-18 97.8 188 38.3
Nitab4.5_0001127g0130 Nicotiana tabacum HOM05D000113 ORTHO05D012125 2.1e-18 97.4 109 51.4
MD06G1200100 Malus domestica HOM05D000113 ORTHO05D002571 6.8e-17 92.4 87 52.9
DCAR_026352 Daucus carota HOM05D000113 ORTHO05D002571 1.2e-16 91.7 196 35.2
CSS0030678 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 4.4e-16 89.7 136 43.4
FvH4_1g06760 Fragaria vesca HOM05D000113 ORTHO05D002571 5.7e-16 89.4 191 43.5
Ciclev10024265m.g Citrus clementina HOM05D000113 ORTHO05D012125 9.8e-16 88.6 130 41.5
Lsat_1_v5_gn_9_24861 Lactuca sativa HOM05D000113 ORTHO05D002571 9.8e-16 88.6 148 41.9
MD02G1072500 Malus domestica HOM05D000113 ORTHO05D002571 1.3e-15 88.2 191 34.0
Ah.13g073050 Amaranthus hybridus HOM05D000113 ORTHO05D002571 2.9e-15 87.0 178 44.9
Peaxi162Scf00201g00132 Petunia axillaris HOM05D000113 ORTHO05D002571 3.7e-15 86.7 175 42.9
QL10p018794 Quercus lobata HOM05D000113 ORTHO05D002571 1.8e-14 84.3 94 50.0
Nitab4.5_0000219g0080 Nicotiana tabacum HOM05D000113 ORTHO05D002571 2.4e-14 84.0 102 51.0
Hund09854 Selenicereus undatus HOM05D000113 ORTHO05D012125 5.4e-14 82.8 188 35.6
arahy.Tifrunner.gnm1.ann1.U2PNLV Arachis hypogaea HOM05D000113 ORTHO05D002571 7.0e-14 82.4 169 34.3
TWI81G1049 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 9.2e-14 82.0 129 48.1
Atru.chr12.1784 Acer truncatum HOM05D000113 ORTHO05D012125 1.2e-13 81.6 68 57.4
Glyma.11G217750 Glycine max HOM05D000113 ORTHO05D012125 1.6e-13 81.3 111 44.1
MD08G1042900 Malus domestica HOM05D000113 ORTHO05D002571 2.0e-13 80.9 163 37.4
Nitab4.5_0008517g0020 Nicotiana tabacum HOM05D000113 ORTHO05D002571 2.0e-13 80.9 103 48.5
HanXRQChr09g0270171 Helianthus annuus HOM05D000113 ORTHO05D002571 4.6e-13 79.7 178 32.0
RcHm_v2.0_Chr2g0092541 Rosa chinensis HOM05D000113 ORTHO05D002571 1.3e-12 78.2 88 46.6
Pp3c1_18490 Physcomitrium patens HOM05D000113 ORTHO05D002571 2.3e-12 77.4 92 37.0
FAN19G0651 Fragaria x ananassa HOM05D000113 ORTHO05D002571 3.9e-12 76.6 69 52.2
FvH4_1g06770 Fragaria vesca HOM05D000113 ORTHO05D002571 8.6e-12 75.5 69 52.2
SMO356G0256 Selaginella moellendorffii HOM05D000113 ORTHO05D002571 8.6e-12 75.5 115 40.0
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.1e-11 75.1 75 45.3
FAN26G0107 Fragaria x ananassa HOM05D000113 ORTHO05D002571 5.6e-11 72.8 198 29.8
FAN26G1920 Fragaria x ananassa HOM05D000113 ORTHO05D002571 5.6e-11 72.8 198 29.8
FAN23G0944 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.6e-10 71.2 87 44.8
FAN26G0487 Fragaria x ananassa HOM05D000113 ORTHO05D012125 2.1e-10 70.9 188 38.8
FAN26G1966 Fragaria x ananassa HOM05D000113 ORTHO05D012125 2.1e-10 70.9 187 36.9
Prupe.6G014300 Prunus persica HOM05D000113 ORTHO05D012125 2.8e-10 70.5 81 49.4
Ciclev10017694m.g Citrus clementina HOM05D000113 ORTHO05D012125 4.7e-10 69.7 176 38.6
SEGI_38837 Sequoiadendron giganteum HOM05D000113 ORTHO05D012125 4.7e-10 69.7 71 46.5
Gohir.A04G140200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 1.5e-08 64.7 66 47.0
Nitab4.5_0004622g0020 Nicotiana tabacum HOM05D000113 ORTHO05D002571 2.0e-08 64.3 110 33.6
Gohir.D04G183400 Gossypium hirsutum HOM05D000113 ORTHO05D002571 2.6e-08 63.9 68 45.6
FAN19G3029 Fragaria x ananassa HOM05D000113 ORTHO05D012125 9.8e-08 62.0 178 33.7
QL93p0191_0033 Quercus lobata HOM05D000113 ORTHO05D002571 1.7e-07 61.2 66 50.0
CBR_g24329 Chara braunii HOM05D000113 ORTHO05D002571 1.1e-06 58.5 95 35.8
THA.LOC104814472 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 1.1e-06 58.5 144 30.6
Cfa004955 Carpinus fangiana HOM05D000113 ORTHO05D002571 4.1e-06 56.6 108 37.0
SHI27002 Sapria himalayana HOM05D000113 ORTHO05D012125 5.4e-06 56.2 142 33.1
Hund13422 Selenicereus undatus HOM05D000113 ORTHO05D002571 7.0e-06 55.8 144 32.6


User provided reference genes

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