Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 6.8e-198 693.7 337 100.0
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 9.7e-152 540.4 354 75.1
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 9.7e-152 540.4 354 75.1
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.2e-149 533.5 361 72.3
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 3.8e-148 528.5 344 75.9
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 1.2e-146 523.5 365 67.1
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 4.7e-146 521.5 363 68.9
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 7.9e-146 520.8 364 69.8
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 7.4e-144 514.2 376 67.3
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 5.0e-140 501.5 365 66.8
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 4.2e-139 498.4 360 66.7
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 4.7e-138 495.0 351 66.4
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 4.7e-138 495.0 360 67.8
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.4e-137 493.4 342 68.4
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 4.0e-137 491.9 359 63.8
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 8.8e-137 490.7 356 68.0
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 1.1e-136 490.3 358 66.5
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 8.2e-135 484.2 363 65.8
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 8.2e-135 484.2 359 64.3
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 2.4e-134 482.6 434 57.8
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 9.1e-134 480.7 361 63.7
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.6e-133 479.9 354 66.9
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 3.5e-133 478.8 345 66.1
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 5.9e-133 478.0 355 64.8
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.0e-132 477.2 355 63.9
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 1.3e-132 476.9 348 66.1
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.3e-132 476.9 347 64.8
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 2.2e-132 476.1 358 62.8
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.9e-132 475.7 357 63.6
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 3.8e-132 475.3 357 63.3
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 8.5e-132 474.2 359 63.0
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.1e-131 473.8 357 63.0
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 1.5e-131 473.4 348 65.2
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.5e-131 473.4 364 63.2
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.9e-131 473.0 347 65.7
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.9e-131 473.0 358 65.9
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 2.5e-131 472.6 324 67.3
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.2e-131 472.2 348 64.9
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 3.2e-131 472.2 332 65.4
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 3.2e-131 472.2 343 65.9
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 4.2e-131 471.9 355 63.9
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 5.5e-131 471.5 347 65.4
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 7.2e-131 471.1 357 65.0
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 9.4e-131 470.7 358 62.3
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 9.4e-131 470.7 364 61.8
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.2e-130 470.3 357 63.3
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 2.1e-130 469.5 345 65.2
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 2.7e-130 469.2 361 62.9
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 2.7e-130 469.2 408 55.9
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 6.1e-130 468.0 354 62.4
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 6.1e-130 468.0 339 66.1
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 8.0e-130 467.6 345 64.9
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 6.8e-129 464.5 345 64.3
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 6.8e-129 464.5 364 61.3
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 1.2e-128 463.8 346 64.5
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 1.2e-128 463.8 353 62.0
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 7.5e-128 461.1 365 59.5
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 7.5e-128 461.1 342 64.6
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 1.3e-127 460.3 338 65.1
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 1.3e-127 460.3 330 64.2
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 1.7e-127 459.9 334 65.6
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 1.7e-127 459.9 486 50.2
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 1.7e-127 459.9 338 65.7
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 3.7e-127 458.8 335 63.6
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 4.8e-127 458.4 354 61.9
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 6.3e-127 458.0 342 64.0
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 1.1e-126 457.2 336 64.0
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 1.1e-126 457.2 361 61.8
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 1.1e-126 457.2 334 65.3
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 1.8e-126 456.4 336 63.7
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 2.4e-126 456.1 336 63.4
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 9.1e-126 454.1 337 63.5
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 9.1e-126 454.1 356 62.4
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 7.7e-125 451.1 330 64.2
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 1.0e-124 450.7 354 63.0
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 1.3e-124 450.3 349 63.0
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 2.9e-124 449.1 339 64.0
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 2.9e-124 449.1 336 63.1
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 2.9e-124 449.1 336 63.1
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 3.8e-124 448.7 315 66.3
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 6.5e-124 448.0 331 64.4
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 1.1e-123 447.2 429 53.1
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 1.2e-122 443.7 353 62.3
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 2.1e-122 443.0 331 64.4
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 2.7e-122 442.6 350 61.4
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 6.1e-122 441.4 332 64.5
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.4e-121 440.3 332 64.2
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 3.0e-121 439.1 320 68.4
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.2e-120 437.2 361 60.4
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 4.1e-118 428.7 357 58.5
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 4.1e-118 428.7 353 58.4
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 6.6e-116 421.4 376 56.6
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 2.4e-110 402.9 308 63.0
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 2.4e-110 402.9 286 65.0
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.0e-108 397.5 355 56.6
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 2.9e-108 396.0 359 54.0
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.5e-107 393.7 337 57.3
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 5.6e-107 391.7 356 53.7
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 6.2e-106 388.3 353 57.2
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 1.5e-104 383.6 358 56.4
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 1.7e-103 380.2 381 49.6
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 1.9e-102 376.7 351 55.6
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 3.2e-102 375.9 356 49.4
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 1.2e-101 374.0 234 71.4
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.0e-100 370.9 251 70.9
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 1.3e-100 370.5 318 60.1
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.5e-91 339.7 213 72.8
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 5.2e-89 332.0 296 56.8
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 1.7e-87 327.0 211 70.6
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 5.4e-86 322.0 419 41.3
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 1.2e-85 320.9 283 55.8
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 5.4e-78 295.4 374 39.8
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 5.1e-76 288.9 154 80.5
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 6.6e-76 288.5 420 36.4
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 1.3e-74 284.3 333 40.2
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 1.9e-70 270.4 347 43.2
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 3.8e-63 246.1 132 82.6
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 3.2e-62 243.0 223 55.6
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 6.0e-61 238.8 128 80.5
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 1.5e-56 224.2 250 47.2
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.5e-56 224.2 250 47.2
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 1.6e-45 187.6 178 52.8
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 2.1e-45 187.2 179 52.5
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 8.2e-42 175.3 184 53.3
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 1.9e-38 164.1 126 54.0
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 1.4e-36 157.9 81 82.7
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 2.8e-34 150.2 185 45.4
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 1.6e-29 134.4 75 82.7
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.2e-24 118.2 111 55.9
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 7.5e-19 99.0 198 30.8
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 1.1e-17 95.1 87 52.9
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.0e-16 90.9 119 47.1
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.1e-09 67.0 102 40.2


User provided reference genes

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