Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 2.7e-132 475.3 238 100.0
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 3.0e-99 365.5 241 80.1
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 2.2e-97 359.4 195 92.8
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 2.8e-97 359.0 239 77.4
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 6.3e-97 357.8 235 75.7
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 7.0e-96 354.4 235 76.6
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 5.5e-93 344.7 240 74.6
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 1.4e-91 340.1 246 72.8
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 3.0e-91 339.0 182 89.0
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 5.2e-91 338.2 260 70.4
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 2.0e-90 336.3 237 75.5
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 3.3e-90 335.5 240 73.3
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 3.3e-90 335.5 238 72.7
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 1.3e-89 333.6 182 86.8
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 1.3e-89 333.6 237 72.6
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 1.3e-89 333.6 222 77.0
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 1.7e-89 333.2 216 76.4
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 1.7e-89 333.2 244 72.5
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 2.2e-89 332.8 225 75.6
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 2.8e-89 332.4 238 72.7
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 4.8e-89 331.6 204 81.4
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 8.2e-89 330.9 244 71.3
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 3.1e-88 328.9 241 71.8
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.1e-88 328.9 209 78.9
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 3.1e-88 328.9 212 77.8
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 4.1e-88 328.6 203 80.3
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 5.3e-88 328.2 226 74.8
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 5.3e-88 328.2 191 82.2
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 7.0e-88 327.8 238 71.0
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 7.0e-88 327.8 239 73.2
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 1.2e-87 327.0 209 78.9
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.2e-87 327.0 197 82.7
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 1.2e-87 327.0 243 72.8
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 2.0e-87 326.2 209 79.9
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.0e-87 326.2 209 79.9
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.6e-87 325.9 229 72.1
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 3.5e-87 325.5 240 71.2
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 3.5e-87 325.5 181 87.3
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 5.9e-87 324.7 212 76.9
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 7.7e-87 324.3 238 73.1
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.3e-86 323.6 189 84.1
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 1.3e-86 323.6 187 85.0
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.7e-86 323.2 180 85.6
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 1.7e-86 323.2 219 75.8
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 2.2e-86 322.8 225 73.8
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 2.9e-86 322.4 223 74.9
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.0e-86 321.6 209 78.5
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 5.0e-86 321.6 200 79.0
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 6.5e-86 321.2 246 69.5
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.1e-85 320.5 203 78.3
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.1e-85 320.5 211 76.8
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.1e-85 320.5 211 76.8
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 2.5e-85 319.3 240 70.8
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 4.2e-85 318.5 243 69.5
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 5.5e-85 318.2 176 85.8
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 7.2e-85 317.8 240 70.0
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.6e-84 316.6 202 76.2
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.1e-84 316.2 227 72.7
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 2.7e-84 315.8 238 70.6
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 2.7e-84 315.8 164 90.9
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 3.6e-84 315.5 215 74.9
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 3.6e-84 315.5 244 69.7
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 4.7e-84 315.1 234 70.5
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 6.1e-84 314.7 201 77.6
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 6.1e-84 314.7 178 84.8
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 6.1e-84 314.7 240 70.4
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 8.0e-84 314.3 236 67.8
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 1.0e-83 313.9 186 82.8
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 1.0e-83 313.9 201 77.1
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.0e-83 313.9 180 82.8
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.4e-83 313.5 217 74.2
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 1.8e-83 313.2 247 67.2
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 3.0e-83 312.4 217 73.7
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 3.0e-83 312.4 229 72.5
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 4.0e-83 312.0 218 72.5
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 5.2e-83 311.6 187 79.7
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 6.7e-83 311.2 201 75.6
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 8.8e-83 310.8 209 75.6
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.2e-82 310.5 244 68.9
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 1.2e-82 310.5 239 67.8
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 1.2e-82 310.5 198 76.3
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.5e-82 310.1 189 80.4
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.5e-82 310.1 195 78.5
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 2.6e-82 309.3 244 68.4
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 2.6e-82 309.3 191 77.5
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 2.6e-82 309.3 233 69.5
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 2.6e-82 309.3 244 68.9
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 3.3e-82 308.9 234 67.9
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 3.3e-82 308.9 183 82.0
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 4.4e-82 308.5 218 71.6
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 4.4e-82 308.5 240 67.5
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 5.7e-82 308.1 240 69.2
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 7.5e-82 307.8 181 80.7
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 9.7e-82 307.4 243 69.1
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 1.7e-81 306.6 208 71.6
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 4.8e-81 305.1 239 68.2
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 4.8e-81 305.1 240 69.6
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 4.8e-81 305.1 240 69.6
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 8.2e-81 304.3 239 69.5
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.1e-80 303.9 181 79.6
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 1.4e-80 303.5 219 71.2
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 2.4e-80 302.8 163 85.3
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 2.4e-80 302.8 192 76.6
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 9.1e-80 300.8 188 77.7
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 9.1e-80 300.8 224 68.8
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 2.7e-79 299.3 193 77.2
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 3.5e-79 298.9 228 67.5
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 2.7e-76 289.3 175 81.1
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 1.0e-75 287.3 180 75.0
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 1.3e-73 280.4 238 63.9
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 3.1e-72 275.8 238 64.7
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 2.7e-71 272.7 266 56.8
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 4.5e-71 271.9 150 85.3
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 9.5e-69 264.2 203 66.5
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 6.8e-67 258.1 182 72.5
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 3.4e-66 255.8 182 67.0
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 4.9e-65 251.9 202 66.3
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 9.2e-64 247.7 180 69.4
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 4.5e-63 245.4 212 57.5
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 1.3e-57 227.3 122 88.5
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.7e-57 226.9 217 59.9
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 2.7e-47 193.0 165 64.8
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.5e-47 192.6 161 64.0
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 1.6e-44 183.7 112 82.1
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 6.2e-44 181.8 115 76.5
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 1.4e-43 180.6 105 80.0
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 8.9e-43 177.9 123 75.6
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 2.2e-41 173.3 120 72.5
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 2.3e-38 163.3 104 75.0
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 3.0e-38 162.9 104 74.0
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 5.4e-32 142.1 78 89.7
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.6e-31 140.6 106 66.0
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 1.3e-30 137.5 124 59.7
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 1.1e-29 134.4 78 83.3
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 1.5e-29 134.0 147 42.2
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.1e-27 127.9 75 84.0
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.8e-27 127.1 71 91.5
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.5e-21 106.7 77 72.7
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 1.8e-19 100.5 73 67.1
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 2.1e-15 87.0 92 53.3
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.1e-15 87.0 49 79.6
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 1.1e-11 74.7 74 51.4
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 4.9e-09 65.9 47 63.8
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 6.4e-09 65.5 42 69.0
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 4.2e-08 62.8 28 89.3
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 4.2e-08 62.8 28 89.3


User provided reference genes

Program Settings