Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold110G31170 Striga asiatica HOM05D001768 ORTHO05D399446 2.0e-76 288.9 130 100.0
SGA_v2.0_scaffold417G51238 Striga asiatica HOM05D001768 ORTHO05D400057 1.9e-34 149.4 90 80.0
SGA_v2.0_scaffold87G27187 Striga asiatica HOM05D001768 ORTHO05D400511 1.9e-34 149.4 90 80.0
SGA_v2.0_scaffold105G30516 Striga asiatica HOM05D001768 ORTHO05D399413 9.9e-20 100.5 87 59.8
SGA_v2.0_scaffold259G45833 Striga asiatica HOM05D001768 ORTHO05D404719 3.2e-18 95.5 129 45.0
SGA_v2.0_scaffold90G27721 Striga asiatica HOM05D001768 ORTHO05D403402 2.9e-11 72.4 48 68.8
SGA_v2.0_scaffold18G08485 Striga asiatica HOM05D001768 ORTHO05D001907 2.1e-09 66.2 44 68.2
Hma1.2p1_0115F.1_g055630 Hydrangea macrophylla HOM05D001768 ORTHO05D001907 3.5e-09 65.5 39 74.4
Cc00_g29240 Coffea canephora HOM05D001768 ORTHO05D001907 7.8e-09 64.3 39 74.4
DCAR_014576 Daucus carota HOM05D001768 ORTHO05D001907 7.8e-09 64.3 39 74.4
Lj1A1030G30 Lonicera japonica HOM05D001768 ORTHO05D001907 7.8e-09 64.3 39 74.4
Prupe.5G136400 Prunus persica HOM05D001768 ORTHO05D001907 7.8e-09 64.3 52 63.5
Actinidia18688 Actinidia chinensis HOM05D001768 ORTHO05D001907 1.0e-08 63.9 39 71.8
MSTRG.8549 Avicennia marina HOM05D001768 ORTHO05D001907 1.0e-08 63.9 39 74.4
DCAR_010542 Daucus carota HOM05D001768 ORTHO05D001907 1.0e-08 63.9 39 74.4
Actinidia34282 Actinidia chinensis HOM05D001768 ORTHO05D001907 1.3e-08 63.5 39 71.8
CSS0000739 Camellia sinensis var. sinensis HOM05D001768 ORTHO05D001907 1.3e-08 63.5 39 71.8
ClCG01G000870 Citrullus lanatus HOM05D001768 ORTHO05D001907 1.3e-08 63.5 39 71.8
CsaV3_5G001000 Cucumis sativus L. HOM05D001768 ORTHO05D001907 1.3e-08 63.5 39 71.8
Dinv17286 Davidia involucrata HOM05D001768 ORTHO05D001907 1.3e-08 63.5 39 71.8
Dinv29199 Davidia involucrata HOM05D001768 ORTHO05D001907 1.3e-08 63.5 39 71.8
Lsat_1_v5_gn_1_43881 Lactuca sativa HOM05D001768 ORTHO05D001907 1.3e-08 63.5 39 74.4
Lsat_1_v5_gn_4_75560 Lactuca sativa HOM05D001768 ORTHO05D001907 1.3e-08 63.5 39 74.4
CAN.G65.174 Capsicum annuum HOM05D001768 ORTHO05D001907 1.7e-08 63.2 52 63.5
FvH4_5g10230 Fragaria vesca HOM05D001768 ORTHO05D001907 1.7e-08 63.2 52 59.6
FAN18G3033 Fragaria x ananassa HOM05D001768 ORTHO05D001907 1.7e-08 63.2 52 59.6
RcHm_v2.0_Chr3g0462551 Rosa chinensis HOM05D001768 ORTHO05D001907 1.7e-08 63.2 52 59.6
RcHm_v2.0_Chr7g0187991 Rosa chinensis HOM05D001768 ORTHO05D001907 1.7e-08 63.2 52 59.6
SGA_v2.0_scaffold44G16864 Striga asiatica HOM05D001768 ORTHO05D001907 1.7e-08 63.2 44 65.9
DCAR_020386 Daucus carota HOM05D002676 ORTHO05D003194 2.3e-08 62.8 39 71.8
HanXRQChr04g0106331 Helianthus annuus HOM05D001768 ORTHO05D001907 2.3e-08 62.8 39 71.8
Lj3A892T32 Lonicera japonica HOM05D001768 ORTHO05D001907 2.3e-08 62.8 39 74.4
Oeu061041.3 Olea europaea HOM05D001768 ORTHO05D001907 2.3e-08 62.8 39 71.8
HanXRQChr01g0030651 Helianthus annuus HOM05D001768 ORTHO05D001907 3.0e-08 62.4 39 71.8
HanXRQChr11g0353771 Helianthus annuus HOM05D001768 ORTHO05D001907 3.0e-08 62.4 39 71.8
Hma1.2p1_0415F.1_g148320 Hydrangea macrophylla HOM05D001768 ORTHO05D001907 3.0e-08 62.4 39 69.2
Solyc12g096700.2 Solanum lycopersicum HOM05D001768 ORTHO05D001907 3.0e-08 62.4 57 56.1
Sopen12g032530 Solanum pennellii HOM05D001768 ORTHO05D001907 3.0e-08 62.4 57 56.1
PGSC0003DMG400029266 Solanum tuberosum HOM05D001768 ORTHO05D001907 3.0e-08 62.4 57 56.1
Actinidia08710 Actinidia chinensis HOM05D001768 ORTHO05D009413 3.9e-08 62.0 39 69.2
CAN.G607.1 Capsicum annuum HOM05D001768 ORTHO05D001907 3.9e-08 62.0 52 61.5
Solyc08g014550.3 Solanum lycopersicum HOM05D001768 ORTHO05D001907 3.9e-08 62.0 52 61.5
Sopen08g005520 Solanum pennellii HOM05D001768 ORTHO05D001907 3.9e-08 62.0 52 61.5
CAN.G1597.4 Capsicum annuum HOM05D001768 ORTHO05D001907 5.1e-08 61.6 39 71.8
FAN04G2799 Fragaria x ananassa HOM05D001768 ORTHO05D001907 5.1e-08 61.6 52 57.7
FAN08G3247 Fragaria x ananassa HOM05D001768 ORTHO05D001907 5.1e-08 61.6 52 57.7
Oeu029330.1 Olea europaea HOM05D001768 ORTHO05D001907 5.1e-08 61.6 39 69.2
Sed0015247 Sechium edule HOM05D001768 ORTHO05D001907 5.1e-08 61.6 39 69.2
Cc08_g10180 Coffea canephora HOM05D001768 ORTHO05D001907 6.6e-08 61.2 39 69.2
MELO3C005844.2 Cucumis melo HOM05D001768 ORTHO05D001907 6.6e-08 61.2 39 69.2
Nitab4.5_0000013g0110 Nicotiana tabacum HOM05D001768 ORTHO05D001907 6.6e-08 61.2 39 69.2
Nitab4.5_0001961g0090 Nicotiana tabacum HOM05D001768 ORTHO05D001907 6.6e-08 61.2 39 69.2
Nitab4.5_0002123g0080 Nicotiana tabacum HOM05D001768 ORTHO05D001907 6.6e-08 61.2 39 69.2
Nitab4.5_0002356g0110 Nicotiana tabacum HOM05D001768 ORTHO05D001907 6.6e-08 61.2 39 69.2
PGSC0003DMG400025212 Solanum tuberosum HOM05D001768 ORTHO05D001907 6.6e-08 61.2 39 69.2
CSS0047753 Camellia sinensis var. sinensis HOM05D001768 ORTHO05D001907 8.7e-08 60.8 39 69.2
Cc02_g29330 Coffea canephora HOM05D001768 ORTHO05D001907 8.7e-08 60.8 37 75.7
MELO3C024850.2 Cucumis melo HOM05D001768 ORTHO05D001907 8.7e-08 60.8 39 66.7
Oeu037983.1 Olea europaea HOM05D001768 ORTHO05D001907 8.7e-08 60.8 39 69.2
Peaxi162Scf01205g00034 Petunia axillaris HOM05D000037 ORTHO05D001907 8.7e-08 60.8 39 69.2
Solyc06g073310.3 Solanum lycopersicum HOM05D001768 ORTHO05D001907 8.7e-08 60.8 52 61.5
Sopen06g029670 Solanum pennellii HOM05D001768 ORTHO05D001907 8.7e-08 60.8 52 61.5
unitig_85.g27207 Utricularia gibba HOM05D001768 ORTHO05D001907 8.7e-08 60.8 39 69.2
unitig_90.g27505 Utricularia gibba HOM05D001768 ORTHO05D001907 8.7e-08 60.8 39 69.2
Cpa.g.sc183.15 Carica papaya HOM05D001768 ORTHO05D001907 1.1e-07 60.5 39 66.7
Cpa.g.sc27.99 Carica papaya HOM05D001768 ORTHO05D001907 1.1e-07 60.5 39 66.7
Migut.F00133 Erythranthe guttata HOM05D001768 ORTHO05D001907 1.1e-07 60.5 39 69.2
Migut.F00978 Erythranthe guttata HOM05D001768 ORTHO05D001907 1.1e-07 60.5 39 69.2
Manes.03G086200 Manihot esculenta HOM05D001768 ORTHO05D001907 1.1e-07 60.5 39 66.7
Manes.11G113000 Manihot esculenta HOM05D001768 ORTHO05D001907 1.1e-07 60.5 39 66.7
Oeu017362.1 Olea europaea HOM05D001768 ORTHO05D001907 1.1e-07 60.5 39 69.2
PGR042G0229 Punica granatum HOM05D001768 ORTHO05D001907 1.1e-07 60.5 39 66.7
SalBow2G3528 Salvia bowleyana HOM05D001768 ORTHO05D001907 1.1e-07 60.5 39 66.7
Lsat_1_v5_gn_6_115420 Lactuca sativa HOM05D001768 ORTHO05D001907 1.5e-07 60.1 39 69.2
SGA_v2.0_scaffold141G35577 Striga asiatica HOM05D001768 ORTHO05D001907 1.5e-07 60.1 44 61.4
SGA_v2.0_scaffold165G38195 Striga asiatica HOM05D001768 ORTHO05D001907 1.5e-07 60.1 44 61.4
unitig_736.g22894 Utricularia gibba HOM05D001768 ORTHO05D001907 1.5e-07 60.1 39 69.2
CiPaw.05G207600 Carya illinoinensis HOM05D001768 ORTHO05D001907 1.9e-07 59.7 39 66.7
CsaV3_4G009970 Cucumis sativus L. HOM05D001768 ORTHO05D001907 1.9e-07 59.7 39 64.1
SalBow4G0342 Salvia bowleyana HOM05D001768 ORTHO05D001907 1.9e-07 59.7 39 66.7
SalBow4G1998 Salvia bowleyana HOM05D001768 ORTHO05D001907 1.9e-07 59.7 39 66.7
SalBow4G2136 Salvia bowleyana HOM05D001768 ORTHO05D001907 1.9e-07 59.7 39 66.7
SalBow4G2355 Salvia bowleyana HOM05D001768 ORTHO05D001907 1.9e-07 59.7 39 66.7
SalBow8G4065 Salvia bowleyana HOM05D001768 ORTHO05D001907 1.9e-07 59.7 39 66.7
Cc07_g19640 Coffea canephora HOM05D001768 ORTHO05D001907 2.5e-07 59.3 37 73.0
Nitab4.5_0000302g0020 Nicotiana tabacum HOM05D001768 ORTHO05D001907 2.5e-07 59.3 39 66.7
Nitab4.5_0000612g0150 Nicotiana tabacum HOM05D001768 ORTHO05D001907 2.5e-07 59.3 39 66.7
Nitab4.5_0005570g0040 Nicotiana tabacum HOM05D001768 ORTHO05D001907 2.5e-07 59.3 39 66.7
Peaxi162Scf00375g00210 Petunia axillaris HOM05D001768 ORTHO05D001907 2.5e-07 59.3 39 66.7
QL09p006176 Quercus lobata HOM05D001768 ORTHO05D001907 2.5e-07 59.3 39 66.7
QL09p006265 Quercus lobata HOM05D001768 ORTHO05D001907 2.5e-07 59.3 39 66.7
QL93p1961_0010 Quercus lobata HOM05D001768 ORTHO05D001907 2.5e-07 59.3 39 66.7
Atru.chr9.1823 Acer truncatum HOM05D001768 ORTHO05D001907 3.3e-07 58.9 39 61.5
Cpa.g.sc183.14 Carica papaya HOM05D001768 ORTHO05D001907 3.3e-07 58.9 39 64.1
MD07G1302000 Malus domestica HOM05D001768 ORTHO05D001907 3.3e-07 58.9 39 64.1
Oeu055414.1 Olea europaea HOM05D001768 ORTHO05D001907 3.3e-07 58.9 39 66.7
Rhsim09G0210600 Rhododendron simsii HOM05D001768 ORTHO05D001907 3.3e-07 58.9 39 66.7
PGSC0003DMG400026910 Solanum tuberosum HOM05D001768 ORTHO05D001907 3.3e-07 58.9 52 61.5
CANSAT01G1998 Cannabis sativa HOM05D001768 ORTHO05D001907 4.3e-07 58.5 39 64.1
Cfa016141 Carpinus fangiana HOM05D001768 ORTHO05D001907 4.3e-07 58.5 39 64.1
Haze_00320 Corylus avellana HOM05D001768 ORTHO05D001907 4.3e-07 58.5 39 64.1
MD01G1230300 Malus domestica HOM05D001768 ORTHO05D001907 4.3e-07 58.5 39 64.1
PGR142G2038 Punica granatum HOM05D001768 ORTHO05D001907 4.3e-07 58.5 39 64.1
Atru.chr9.2116 Acer truncatum HOM05D001768 ORTHO05D001907 5.6e-07 58.2 39 61.5
Eucgr.A00971 Eucalyptus grandis HOM05D001768 ORTHO05D001907 5.6e-07 58.2 39 64.1
Manes.15G110900 Manihot esculenta HOM05D001768 ORTHO05D001907 5.6e-07 58.2 39 64.1
Prupe.2G321000 Prunus persica HOM05D001768 ORTHO05D001907 5.6e-07 58.2 39 64.1
Sed0011061 Sechium edule HOM05D001768 ORTHO05D001907 5.6e-07 58.2 39 64.1
THA.LOC104806467 Tarenaya hassleriana HOM05D001768 ORTHO05D001907 5.6e-07 58.2 39 64.1
THA.LOC104815490 Tarenaya hassleriana HOM05D001768 ORTHO05D001907 5.6e-07 58.2 39 64.1
Ciclev10009377m.g Citrus clementina HOM05D001768 ORTHO05D001907 7.3e-07 57.8 39 61.5
Ciclev10022372m.g Citrus clementina HOM05D001768 ORTHO05D001907 7.3e-07 57.8 39 61.5
vmacro06465 Vaccinium macrocarpon HOM05D001768 ORTHO05D001907 7.3e-07 57.8 39 64.1
Cc00_g33610 Coffea canephora HOM05D001768 ORTHO05D001907 9.6e-07 57.4 37 73.0
Duzib068G1227 Durio zibethinus HOM05D001768 ORTHO05D001907 9.6e-07 57.4 39 61.5
Duzib084G0896 Durio zibethinus HOM05D001768 ORTHO05D001907 9.6e-07 57.4 39 61.5
Duzib205G1940 Durio zibethinus HOM05D001768 ORTHO05D001907 9.6e-07 57.4 39 61.5
Eucgr.K00048 Eucalyptus grandis HOM05D001768 ORTHO05D001907 9.6e-07 57.4 39 61.5
Eucgr.K00324 Eucalyptus grandis HOM05D001768 ORTHO05D001907 9.6e-07 57.4 39 61.5
Eucgr.L03240 Eucalyptus grandis HOM05D001768 ORTHO05D001907 9.6e-07 57.4 39 61.5
Gohir.D11G017400 Gossypium hirsutum HOM05D001768 ORTHO05D001907 9.6e-07 57.4 39 61.5
Gorai.007G018400 Gossypium raimondii HOM05D001768 ORTHO05D001907 9.6e-07 57.4 39 61.5
Manes.03G086203 Manihot esculenta HOM05D001768 ORTHO05D001907 9.6e-07 57.4 39 64.1
Thecc.03G214600 Theobroma cacao HOM05D001768 ORTHO05D001907 9.6e-07 57.4 39 61.5
Aa31LG9G11600 Aethionema arabicum HOM05D001768 ORTHO05D001907 1.3e-06 57.0 39 61.5
AL6G44400 Arabidopsis lyrata HOM05D001768 ORTHO05D001907 1.3e-06 57.0 39 61.5
Thhalv10028984m.g Eutrema salsugineum HOM05D001768 ORTHO05D001907 1.3e-06 57.0 39 61.5
FvH4_7g33110 Fragaria vesca HOM05D001768 ORTHO05D001907 1.3e-06 57.0 39 61.5
FAN01G2549 Fragaria x ananassa HOM05D001768 ORTHO05D001907 1.3e-06 57.0 39 61.5
FAN03G2262 Fragaria x ananassa HOM05D001768 ORTHO05D001907 1.3e-06 57.0 39 61.5
FAN10G3817 Fragaria x ananassa HOM05D001768 ORTHO05D001907 1.3e-06 57.0 39 61.5
FAN10G4162 Fragaria x ananassa HOM05D001768 ORTHO05D001907 1.3e-06 57.0 39 61.5
HanXRQChr16g0511141 Helianthus annuus HOM05D001768 ORTHO05D001907 1.3e-06 57.0 39 66.7
RcHm_v2.0_Chr1g0334541 Rosa chinensis HOM05D001768 ORTHO05D001907 1.3e-06 57.0 39 61.5
RcHm_v2.0_Chr1g0383161 Rosa chinensis HOM05D001768 ORTHO05D001907 1.3e-06 57.0 39 61.5
Sp6g07010 Schrenkiella parvula HOM05D001768 ORTHO05D001907 1.3e-06 57.0 39 61.5
Aqoxy6G03032 Aquilegia oxysepala HOM05D001768 ORTHO05D001907 1.6e-06 56.6 44 56.8
ECA246G5007 Erigeron canadensis HOM05D001768 ORTHO05D001907 1.6e-06 56.6 39 71.8
CANSAT78G0932 Cannabis sativa HOM05D001768 ORTHO05D001907 2.1e-06 56.2 39 61.5
Thhalv10008838m.g Eutrema salsugineum HOM05D001768 ORTHO05D001907 2.1e-06 56.2 39 61.5
Thhalv10008851m.g Eutrema salsugineum HOM05D001768 ORTHO05D001907 2.1e-06 56.2 39 61.5
Gohir.A11G017600 Gossypium hirsutum HOM05D001768 ORTHO05D001907 2.1e-06 56.2 39 59.0
AT4G10450 Arabidopsis thaliana HOM05D001768 ORTHO05D001907 2.8e-06 55.8 39 59.0
BcaB01g01475 Brassica carinata HOM05D001768 ORTHO05D001907 2.8e-06 55.8 39 59.0
CiPaw.12G074000 Carya illinoinensis HOM05D001768 ORTHO05D001907 2.8e-06 55.8 39 69.2
Ciclev10022376m.g Citrus clementina HOM05D001768 ORTHO05D001907 2.8e-06 55.8 39 59.0
QL02p026874 Quercus lobata HOM05D001768 ORTHO05D001907 2.8e-06 55.8 39 59.0
THA.LOC109116001 Tarenaya hassleriana HOM05D001768 ORTHO05D001907 2.8e-06 55.8 39 61.5
Gohir.A12G243400 Gossypium hirsutum HOM05D001768 ORTHO05D001907 3.6e-06 55.5 39 59.0
Gohir.D12G244400 Gossypium hirsutum HOM05D001768 ORTHO05D001907 3.6e-06 55.5 39 59.0
Rhsim03G0217400 Rhododendron simsii HOM05D001768 ORTHO05D001907 3.6e-06 55.5 39 61.5
AT1G33120 Arabidopsis thaliana HOM05D001768 ORTHO05D001907 4.8e-06 55.1 39 61.5
AT1G33140 Arabidopsis thaliana HOM05D001768 ORTHO05D001907 4.8e-06 55.1 39 61.5
Carub.0001s3138 Capsella rubella HOM05D001768 ORTHO05D001907 4.8e-06 55.1 39 61.5
Carub.0006s2484 Capsella rubella HOM05D001768 ORTHO05D001907 4.8e-06 55.1 39 61.5
COL.COLO4_10857 Corchorus olitorius HOM05D001768 ORTHO05D001907 4.8e-06 55.1 39 59.0
Potri.011G147700 Populus trichocarpa HOM05D001768 ORTHO05D001907 4.8e-06 55.1 44 59.1
Potri.011G148700 Populus trichocarpa HOM05D001768 ORTHO05D001907 4.8e-06 55.1 44 59.1
Sabra11G0132800 Salix brachista HOM05D001768 ORTHO05D001907 4.8e-06 55.1 44 59.1
Sabra16G0306400 Salix brachista HOM05D001768 ORTHO05D001907 4.8e-06 55.1 44 59.1
BcaB05g23898 Brassica carinata HOM05D001768 ORTHO05D001907 6.2e-06 54.7 39 59.0
BcaC04g21036 Brassica carinata HOM05D001768 ORTHO05D001907 6.2e-06 54.7 39 59.0
A02p26540 Brassica napus HOM05D001768 ORTHO05D001907 6.2e-06 54.7 39 59.0
A09p28710 Brassica napus HOM05D001768 ORTHO05D001907 6.2e-06 54.7 39 59.0
C09p36430 Brassica napus HOM05D001768 ORTHO05D001907 6.2e-06 54.7 39 59.0
BolC9t56479H Brassica oleracea HOM05D001768 ORTHO05D001907 6.2e-06 54.7 39 59.0
BraA02t07657Z Brassica rapa HOM05D001768 ORTHO05D001907 6.2e-06 54.7 39 59.0
BraA09t38430Z Brassica rapa HOM05D001768 ORTHO05D001907 6.2e-06 54.7 39 59.0
A09p20400 Brassica napus HOM05D001768 ORTHO05D001907 8.1e-06 54.3 39 59.0
BraA09t37646Z Brassica rapa HOM05D001768 ORTHO05D001907 8.1e-06 54.3 39 59.0


User provided reference genes

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