Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 5.5e-154 548.5 407 100.0
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 5.7e-95 352.4 410 60.2
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 7.0e-93 345.5 410 66.8
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 9.2e-93 345.1 410 64.9
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 4.5e-92 342.8 411 60.6
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 4.5e-92 342.8 410 59.0
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 1.9e-90 337.4 411 53.3
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 3.7e-86 323.2 408 61.5
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 4.9e-86 322.8 410 62.2
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 6.4e-86 322.4 407 60.9
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.9e-85 320.9 412 54.9
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 9.2e-85 318.5 410 56.8
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 4.6e-84 316.2 410 60.0
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 4.6e-84 316.2 411 60.8
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 1.0e-83 315.1 412 62.9
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.0e-83 315.1 414 55.6
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.6e-81 307.8 403 51.4
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 1.6e-81 307.8 413 55.9
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 3.6e-81 306.6 408 60.5
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 6.2e-81 305.8 414 59.4
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 6.2e-81 305.8 412 59.2
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 6.8e-80 302.4 413 56.4
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 2.6e-79 300.4 422 60.7
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 3.4e-79 300.1 419 53.0
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 5.8e-79 299.3 412 56.3
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 2.4e-77 293.9 414 62.6
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 9.2e-77 292.0 413 54.2
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 2.7e-76 290.4 407 56.3
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 4.6e-76 289.7 407 60.7
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 6.0e-76 289.3 420 57.4
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 3.0e-75 287.0 366 54.9
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 3.0e-75 287.0 411 56.2
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 6.6e-75 285.8 410 60.5
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 9.5e-74 282.0 418 57.2
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 9.5e-74 282.0 414 58.0
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 8.9e-72 275.4 413 58.1
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 2.6e-71 273.9 417 45.1
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 6.4e-70 269.2 412 56.8
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 2.4e-69 267.3 408 63.0
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 9.2e-69 265.4 414 46.6
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 1.6e-68 264.6 309 59.9
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.5e-68 263.5 416 58.9
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 6.0e-68 262.7 416 47.4
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 1.3e-67 261.5 409 56.2
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 3.0e-67 260.4 419 57.5
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 3.9e-67 260.0 357 51.3
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 6.6e-67 259.2 413 46.7
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 8.6e-67 258.8 412 49.0
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 8.6e-67 258.8 437 54.7
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 1.1e-66 258.5 427 55.7
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.1e-66 258.5 420 52.6
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 1.5e-66 258.1 408 62.3
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 1.5e-66 258.1 411 50.9
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 1.9e-66 257.7 406 51.0
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 4.3e-66 256.5 415 61.9
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 4.3e-66 256.5 413 54.2
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 5.6e-66 256.1 411 45.0
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 5.6e-66 256.1 406 53.0
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 7.3e-66 255.8 407 49.9
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 9.5e-66 255.4 417 48.7
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 9.5e-66 255.4 394 52.3
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 1.2e-65 255.0 410 48.3
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 1.2e-65 255.0 413 59.8
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 1.6e-65 254.6 413 48.7
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 1.6e-65 254.6 409 43.0
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.6e-65 253.4 412 55.3
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 4.7e-65 253.1 409 45.0
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 6.2e-65 252.7 418 43.1
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 8.1e-65 252.3 410 46.8
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 5.2e-64 249.6 351 57.0
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 5.2e-64 249.6 432 56.7
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 6.8e-64 249.2 409 57.2
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 6.8e-64 249.2 409 57.2
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 8.9e-64 248.8 416 54.3
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 4.4e-63 246.5 428 49.8
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 5.8e-63 246.1 414 51.0
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.7e-62 244.6 389 50.6
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 1.7e-62 244.6 408 53.2
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 2.2e-62 244.2 182 67.0
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 3.8e-62 243.4 408 52.5
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 4.9e-62 243.0 407 45.5
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.1e-61 241.9 406 56.4
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 1.4e-61 241.5 415 59.5
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 1.9e-61 241.1 411 50.9
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 4.2e-61 240.0 405 48.6
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 7.1e-61 239.2 409 50.9
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.6e-60 238.0 419 57.8
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 2.7e-60 237.3 407 58.2
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 3.5e-60 236.9 383 51.7
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.5e-60 236.9 408 55.9
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 4.6e-60 236.5 407 47.7
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 6.0e-60 236.1 418 56.7
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 2.3e-59 234.2 405 48.9
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 2.3e-59 234.2 267 68.2
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 6.6e-59 232.6 432 56.0
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 2.5e-58 230.7 373 50.7
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 4.3e-58 229.9 388 55.2
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.3e-58 229.9 356 59.8
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 4.3e-58 229.9 421 55.6
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 5.6e-58 229.6 356 60.1
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.2e-57 228.4 359 60.4
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.2e-57 228.4 359 60.4
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 1.6e-57 228.0 408 50.5
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 4.7e-57 226.5 311 49.5
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 6.2e-57 226.1 409 38.6
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 1.1e-56 225.3 437 47.8
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 1.8e-56 224.6 178 67.4
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 6.9e-56 222.6 423 52.7
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 9.0e-56 222.2 393 48.3
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 1.5e-55 221.5 414 59.2
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 2.6e-55 220.7 408 53.4
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 1.3e-54 218.4 366 52.2
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 1.7e-54 218.0 412 45.6
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 2.2e-54 217.6 418 59.8
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 2.9e-54 217.2 411 57.4
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 2.9e-54 217.2 353 56.7
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 4.9e-54 216.5 408 52.7
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.2e-52 211.8 313 49.5
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 1.6e-52 211.5 358 46.6
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.6e-52 211.5 416 59.6
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.7e-52 210.7 386 47.9
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 4.6e-52 209.9 416 59.6
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 4.6e-52 209.9 412 59.7
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.0e-51 208.8 388 49.0
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.0e-51 208.8 260 54.2
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 1.5e-50 204.9 348 50.3
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 1.3e-49 201.8 119 77.3
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 2.1e-49 201.1 410 59.8
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 2.1e-49 201.1 445 52.1
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 3.6e-49 200.3 255 58.8
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 8.1e-49 199.1 178 62.9
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 1.4e-48 198.4 390 53.6
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 5.3e-48 196.4 118 78.8
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.7e-46 191.4 110 80.0
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.9e-45 188.0 354 46.3
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 3.5e-44 183.7 241 48.1
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 6.0e-44 183.0 350 40.6
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 2.4e-40 171.0 345 38.3
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 1.5e-34 151.8 279 50.2
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 2.6e-31 141.0 286 50.3
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.5e-29 134.4 120 60.0
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 4.2e-29 133.7 287 40.8
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 2.3e-27 127.9 311 41.5
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 9.7e-26 122.5 88 69.3
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 2.8e-25 120.9 92 67.4
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 2.6e-23 114.4 99 62.6
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 4.2e-21 107.1 299 34.8
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 1.1e-18 99.0 97 46.4
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 6.3e-17 93.2 51 80.4
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 7.7e-15 86.3 75 64.0
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 6.5e-14 83.2 266 43.6
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 1.5e-10 72.0 42 73.8
CSS0025735 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.6e-10 71.2 42 83.3
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 6.3e-09 66.6 143 34.3
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 8.2e-09 66.2 153 34.6
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 1.1e-08 65.9 109 37.6
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 1.4e-08 65.5 94 40.4
Gohir.D04G103133 Gossypium hirsutum HOM05D005264 ORTHO05D005428 9.1e-08 62.8 130 33.8
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 1.2e-07 62.4 136 36.0
arahy.Tifrunner.gnm1.ann1.6SGT2N Arachis hypogaea HOM05D005264 ORTHO05D005428 1.5e-07 62.0 131 35.9
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 2.0e-07 61.6 126 34.1
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 2.0e-07 61.6 150 32.7
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 2.6e-07 61.2 104 37.5
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 2.6e-07 61.2 148 32.4
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 3.5e-07 60.8 93 39.8
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 3.5e-07 60.8 93 38.7
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 4.5e-07 60.5 117 35.9
FAN17G2909 Fragaria x ananassa HOM05D005264 ORTHO05D005428 4.5e-07 60.5 132 32.6
Gohir.D08G167332 Gossypium hirsutum HOM05D005264 ORTHO05D005428 5.9e-07 60.1 122 34.4
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 1.0e-06 59.3 147 34.0
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 2.2e-06 58.2 142 33.1
PGR142G0147 Punica granatum HOM05D005264 ORTHO05D005428 3.8e-06 57.4 143 30.8
Atru.chr11.1210 Acer truncatum HOM05D005264 ORTHO05D005428 5.0e-06 57.0 153 32.0
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 6.5e-06 56.6 53 54.7
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 8.5e-06 56.2 34 64.7


User provided reference genes

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