Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_41248 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 2.6e-127 458.8 238 100.0
ATR0589G031 Amborella trichopoda HOM05D004509 ORTHO05D005568 1.4e-80 303.5 237 64.6
Mapoly0141s0003 Marchantia polymorpha HOM05D004509 ORTHO05D005568 4.7e-76 288.5 239 61.5
Mapoly0259s0001 Marchantia polymorpha HOM05D004509 ORTHO05D005568 4.7e-76 288.5 239 61.5
SEGI_07953 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 1.7e-70 270.0 132 100.0
Pp3c3_10340 Physcomitrium patens HOM05D004509 ORTHO05D005568 2.9e-70 269.2 238 57.6
Pp3c13_9770 Physcomitrium patens HOM05D004509 ORTHO05D005568 1.8e-67 260.0 234 57.3
Nn6g33992 Nelumbo nucifera HOM05D004509 ORTHO05D005568 2.6e-66 256.1 233 57.5
SMO298G0006 Selaginella moellendorffii HOM05D004509 ORTHO05D005568 5.4e-64 248.4 189 66.7
TAR374G1004 Trochodendron aralioides HOM05D004509 ORTHO05D005568 7.8e-63 244.6 235 55.3
Dinv28569 Davidia involucrata HOM05D004509 ORTHO05D005568 1.2e-60 237.3 233 54.5
Actinidia13576 Actinidia chinensis HOM05D004509 ORTHO05D005568 1.6e-60 236.9 233 54.1
Potri.001G124000 Populus trichocarpa HOM05D004509 ORTHO05D005568 1.6e-60 236.9 233 53.2
PSO170G1118 Papaver somniferum HOM05D004509 ORTHO05D005568 3.6e-60 235.7 233 54.1
Sc13g0007910 Simmondsia chinensis HOM05D004509 ORTHO05D005568 4.7e-60 235.3 233 53.6
Ciclev10004605m.g Citrus clementina HOM05D004509 ORTHO05D005568 1.0e-59 234.2 232 51.7
PSO017G1204 Papaver somniferum HOM05D004509 ORTHO05D005568 1.0e-59 234.2 233 53.2
CSS0001277 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 1.5e-58 230.3 233 51.5
CSS0008253 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 1.5e-58 230.3 235 52.8
Cfa008172 Carpinus fangiana HOM05D004509 ORTHO05D005568 3.4e-58 229.2 233 51.9
vmacro06795 Vaccinium macrocarpon HOM05D004509 ORTHO05D005568 3.4e-58 229.2 233 53.2
CSS0023984 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 4.4e-58 228.8 233 51.5
GSVIVG01018636001 Vitis vinifera HOM05D004509 ORTHO05D005568 4.4e-58 228.8 234 52.1
Rhsim03G0168100 Rhododendron simsii HOM05D004509 ORTHO05D005568 5.8e-58 228.4 233 53.2
CiPaw.04G060100 Carya illinoinensis HOM05D004509 ORTHO05D005568 1.3e-57 227.3 233 51.9
CiPaw.03G093600 Carya illinoinensis HOM05D004509 ORTHO05D005568 1.7e-57 226.9 233 51.5
Rhsim03G0167900 Rhododendron simsii HOM05D004509 ORTHO05D005568 1.7e-57 226.9 233 52.8
Aqoxy7G00754 Aquilegia oxysepala HOM05D004509 ORTHO05D005568 2.2e-57 226.5 234 50.4
Actinidia24699 Actinidia chinensis HOM05D004509 ORTHO05D005568 2.9e-57 226.1 226 54.0
EL10Ac3g05841 Beta vulgaris HOM05D004509 ORTHO05D005568 4.1e-56 222.2 233 51.1
Lj8C42G3 Lonicera japonica HOM05D004509 ORTHO05D005568 5.4e-56 221.9 233 51.1
MD07G1254100 Malus domestica HOM05D004509 ORTHO05D005568 7.0e-56 221.5 233 51.5
RcHm_v2.0_Chr1g0374441 Rosa chinensis HOM05D004509 ORTHO05D005568 2.0e-55 219.9 233 50.2
QL09p019881 Quercus lobata HOM05D004509 ORTHO05D005568 3.5e-55 219.2 233 49.8
Ah.13g066850 Amaranthus hybridus HOM05D004509 ORTHO05D005568 4.6e-55 218.8 233 51.1
Prupe.2G277400 Prunus persica HOM05D004509 ORTHO05D005568 6.0e-55 218.4 233 51.1
FvH4_7g27570 Fragaria vesca HOM05D004509 ORTHO05D005568 7.8e-55 218.0 233 50.2
Manes.06G135100 Manihot esculenta HOM05D004509 ORTHO05D005568 7.8e-55 218.0 233 50.6
Lsat_1_v5_gn_2_129181 Lactuca sativa HOM05D004509 ORTHO05D005568 1.0e-54 217.6 226 51.8
ECA238G4038 Erigeron canadensis HOM05D004509 ORTHO05D005568 1.3e-54 217.2 226 52.2
Hma1.2p1_1640F.1_g295070 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 3.0e-54 216.1 234 51.7
Sabra01G0095600 Salix brachista HOM05D004509 ORTHO05D005568 3.0e-54 216.1 249 48.2
Cc02_g04230 Coffea canephora HOM05D004509 ORTHO05D005568 3.9e-54 215.7 233 48.9
Eucgr.K00157 Eucalyptus grandis HOM05D004509 ORTHO05D005568 1.5e-53 213.8 233 48.9
HanXRQChr07g0205911 Helianthus annuus HOM05D004509 ORTHO05D005568 1.5e-53 213.8 226 50.0
Hund04598 Selenicereus undatus HOM05D004509 ORTHO05D005568 1.9e-53 213.4 226 51.8
TWI23G1058 Tripterygium wilfordii HOM05D004509 ORTHO05D005568 3.3e-53 212.6 233 49.8
Manes.14G035800 Manihot esculenta HOM05D004509 ORTHO05D005568 5.6e-53 211.8 237 49.4
Potri.003G109400 Populus trichocarpa HOM05D004509 ORTHO05D005568 5.6e-53 211.8 233 49.4
DCAR_018107 Daucus carota HOM05D004509 ORTHO05D005568 9.5e-53 211.1 228 49.6
FAN01G2021 Fragaria x ananassa HOM05D004509 ORTHO05D005568 9.5e-53 211.1 233 50.2
Sed0007620 Sechium edule HOM05D004509 ORTHO05D005568 9.5e-53 211.1 233 47.6
THA.LOC104808282 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 9.5e-53 211.1 233 48.9
THA.LOC104825064 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 9.5e-53 211.1 234 50.0
Sed0019493 Sechium edule HOM05D004509 ORTHO05D005568 1.2e-52 210.7 233 48.5
Thecc.03G156200 Theobroma cacao HOM05D004509 ORTHO05D005568 3.6e-52 209.1 233 51.1
AT4G25230 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 4.7e-52 208.8 233 48.1
MELO3C014338.2 Cucumis melo HOM05D004509 ORTHO05D005568 4.7e-52 208.8 233 48.5
Nitab4.5_0000448g0150 Nicotiana tabacum HOM05D004509 ORTHO05D005568 4.7e-52 208.8 229 51.1
AL7G27910 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 6.2e-52 208.4 233 47.6
MSTRG.8823 Avicennia marina HOM05D004509 ORTHO05D005568 8.0e-52 208.0 233 47.2
FAN06G3392 Fragaria x ananassa HOM05D004509 ORTHO05D005568 8.0e-52 208.0 233 49.4
BraA08t34076Z Brassica rapa HOM05D004509 ORTHO05D005568 1.1e-51 207.6 233 47.6
CARHR232640 Cardamine hirsuta HOM05D004509 ORTHO05D005568 1.1e-51 207.6 233 48.5
HanXRQChr14g0461391 Helianthus annuus HOM05D004509 ORTHO05D005568 1.1e-51 207.6 226 47.8
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 1.1e-51 207.6 219 50.7
Glyma.06G316600 Glycine max HOM05D004509 ORTHO05D005568 1.4e-51 207.2 219 51.6
BcaB03g12459 Brassica carinata HOM05D004509 ORTHO05D005568 1.8e-51 206.8 233 48.1
CsaV3_6G036820 Cucumis sativus L. HOM05D004509 ORTHO05D005568 1.8e-51 206.8 232 48.7
Atru.chr1.723 Acer truncatum HOM05D004509 ORTHO05D005568 2.3e-51 206.5 233 48.5
BcaC07g38180 Brassica carinata HOM05D004509 ORTHO05D005568 2.3e-51 206.5 233 47.6
A08p21270 Brassica napus HOM05D004509 ORTHO05D005568 2.3e-51 206.5 233 47.6
Duzib068G0492 Durio zibethinus HOM05D004509 ORTHO05D005568 2.3e-51 206.5 219 51.1
Medtr3g007760 Medicago truncatula HOM05D004509 ORTHO05D005568 2.3e-51 206.5 226 48.7
Oeu015322.1 Olea europaea HOM05D004509 ORTHO05D005568 2.3e-51 206.5 231 49.8
Glyma.04G130500 Glycine max HOM05D004509 ORTHO05D005568 3.1e-51 206.1 214 50.9
Gorai.001G048500 Gossypium raimondii HOM05D004509 ORTHO05D005568 6.8e-51 204.9 233 49.4
Aa31sc16G230 Aethionema arabicum HOM05D004509 ORTHO05D005568 8.9e-51 204.5 233 47.6
TPR.G12300 Trifolium pratense HOM05D004509 ORTHO05D005568 8.9e-51 204.5 226 48.2
Thhalv10024774m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 1.2e-50 204.1 233 46.8
Sp7g23250 Schrenkiella parvula HOM05D004509 ORTHO05D005568 1.2e-50 204.1 233 47.6
HPP92_027424 Vanilla planifolia HOM05D004509 ORTHO05D005568 1.2e-50 204.1 194 55.7
Sopen06g010960 Solanum pennellii HOM05D004509 ORTHO05D005568 1.5e-50 203.8 229 49.3
A03p55840 Brassica napus HOM05D004509 ORTHO05D005568 2.0e-50 203.4 233 47.2
BraA03t14655Z Brassica rapa HOM05D004509 ORTHO05D005568 2.0e-50 203.4 233 47.2
Carub.0007s1579 Capsella rubella HOM05D004509 ORTHO05D005568 2.0e-50 203.4 233 47.2
Ca_14040_v3 Cicer arietinum L. HOM05D004509 ORTHO05D005568 2.6e-50 203.0 221 50.2
Gohir.D12G201400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 2.6e-50 203.0 233 49.4
Gorai.008G216500 Gossypium raimondii HOM05D004509 ORTHO05D005568 2.6e-50 203.0 233 49.4
CAN.G839.2 Capsicum annuum HOM05D004509 ORTHO05D005568 3.4e-50 202.6 229 48.5
AT5G51450 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 4.4e-50 202.2 233 47.2
HPP92_021040 Vanilla planifolia HOM05D004509 ORTHO05D005568 4.4e-50 202.2 194 55.2
Lj3g0006861 Lotus japonicus HOM05D004509 ORTHO05D005568 5.8e-50 201.8 230 48.7
Migut.F00473 Erythranthe guttata HOM05D004509 ORTHO05D005568 7.5e-50 201.4 221 47.5
Gohir.A12G198700 Gossypium hirsutum HOM05D004509 ORTHO05D005568 7.5e-50 201.4 233 48.9
BcaC06g32827 Brassica carinata HOM05D004509 ORTHO05D005568 9.8e-50 201.1 233 47.6
Psat5g226800 Pisum sativum HOM05D004509 ORTHO05D005568 9.8e-50 201.1 226 47.3
BolC7t45898H Brassica oleracea HOM05D004509 ORTHO05D005568 1.3e-49 200.7 236 47.9
Peaxi162Scf00054g02212 Petunia axillaris HOM05D004509 ORTHO05D005568 1.7e-49 200.3 229 48.0
Gohir.A07G041300 Gossypium hirsutum HOM05D004509 ORTHO05D005568 2.9e-49 199.5 233 49.4
Os07g0484300 Oryza sativa ssp. japonica HOM05D004509 ORTHO05D005568 6.4e-49 198.4 177 57.1
C07p54120 Brassica napus HOM05D004509 ORTHO05D005568 1.1e-48 197.6 233 46.4
Lalb_Chr18g0049081 Lupinus albus HOM05D004509 ORTHO05D005568 1.4e-48 197.2 214 51.4
Carub.0008s1147 Capsella rubella HOM05D004509 ORTHO05D005568 3.2e-48 196.1 233 46.8
Lalb_Chr04g0264301 Lupinus albus HOM05D004509 ORTHO05D005568 4.1e-48 195.7 214 50.0
Oeu022490.1 Olea europaea HOM05D004509 ORTHO05D005568 7.0e-48 194.9 233 46.4
Sabra03G0075900 Salix brachista HOM05D004509 ORTHO05D005568 1.2e-47 194.1 269 42.4
Lalb_Chr15g0079611 Lupinus albus HOM05D004509 ORTHO05D005568 1.6e-47 193.7 214 49.1
Nitab4.5_0000262g0140 Nicotiana tabacum HOM05D004509 ORTHO05D005568 3.5e-47 192.6 229 48.9
Zm00001eb321470 Zea mays HOM05D004509 ORTHO05D005568 3.5e-47 192.6 217 50.7
Zm00001eb105020 Zea mays HOM05D004509 ORTHO05D005568 6.0e-47 191.8 217 49.3
PGR042G2749 Punica granatum HOM05D004509 ORTHO05D005568 1.7e-46 190.3 231 45.0
BolC1t01999H Brassica oleracea HOM05D004509 ORTHO05D005568 5.1e-46 188.7 231 45.5
A01p16520 Brassica napus HOM05D004509 ORTHO05D005568 1.6e-44 183.7 227 45.4
BraA01t01605Z Brassica rapa HOM05D004509 ORTHO05D005568 1.6e-44 183.7 227 45.4
arahy.Tifrunner.gnm1.ann1.4JD3YM Arachis hypogaea HOM05D004509 ORTHO05D005568 2.3e-43 179.9 230 46.5
arahy.Tifrunner.gnm1.ann1.WP6JS3 Arachis hypogaea HOM05D004509 ORTHO05D005568 5.2e-43 178.7 182 53.8
Thhalv10014220m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 6.8e-43 178.3 233 43.3
AUR62015503 Chenopodium quinoa HOM05D004509 ORTHO05D005568 9.9e-42 174.5 226 46.5
Hund11825 Selenicereus undatus HOM05D004509 ORTHO05D005568 6.4e-41 171.8 233 42.9
AUR62002199 Chenopodium quinoa HOM05D004509 ORTHO05D005568 8.3e-41 171.4 219 46.6
TAR375G0675 Trochodendron aralioides HOM05D004509 ORTHO05D005568 4.1e-40 169.1 178 53.9
FAN10G0128 Fragaria x ananassa HOM05D004509 ORTHO05D005568 5.4e-40 168.7 233 43.3
Lsat_1_v5_gn_9_52140 Lactuca sativa HOM05D004509 ORTHO05D005568 5.4e-40 168.7 216 43.5
FAN03G1842 Fragaria x ananassa HOM05D004509 ORTHO05D005568 7.1e-40 168.3 233 43.3
SGA_v2.0_scaffold70G23600 Striga asiatica HOM05D004509 ORTHO05D005568 9.2e-40 167.9 243 41.6
CDE02G3300 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 1.6e-39 167.2 217 45.6
Lsat_1_v5_gn_3_74740 Lactuca sativa HOM05D004509 ORTHO05D005568 6.0e-39 165.2 249 41.0
BcaC07g38179 Brassica carinata HOM05D004509 ORTHO05D005568 1.3e-38 164.1 147 55.1
Gohir.D07G045400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 1.6e-36 157.1 233 42.5
Sp6g13610 Schrenkiella parvula HOM05D004509 ORTHO05D005568 1.2e-34 151.0 172 47.7
Dinv22949 Davidia involucrata HOM05D004509 ORTHO05D005568 3.4e-34 149.4 139 54.0
FAN06G0097 Fragaria x ananassa HOM05D004509 ORTHO05D005568 2.9e-33 146.4 239 40.6
Hma1.2p1_1132F.1_g260350 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 2.4e-32 143.3 118 59.3
Cpa.g.sc3.320 Carica papaya HOM05D004509 ORTHO05D005568 4.7e-28 129.0 163 46.6
ClCG09G013190 Citrullus lanatus HOM05D004509 ORTHO05D005568 5.3e-27 125.6 168 44.0
BcaC09g50792 Brassica carinata HOM05D004509 ORTHO05D005568 1.9e-21 107.1 91 57.1
AL8G25740 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 4.3e-21 105.9 92 52.2
Duzib205G0424 Durio zibethinus HOM05D004509 ORTHO05D005568 7.3e-21 105.1 135 45.2
MBI04_g44458_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 4.9e-17 92.4 71 57.7
BcaNung06355 Brassica carinata HOM05D004509 ORTHO05D005568 5.4e-16 89.0 101 46.5
CBR_g4830 Chara braunii HOM05D004509 ORTHO05D005568 4.6e-15 85.9 133 40.6
COL.COLO4_14126 Corchorus olitorius HOM05D004509 ORTHO05D005568 6.0e-15 85.5 108 44.4
unitig_52.g17762 Utricularia gibba HOM05D000486 ORTHO05D000375 7.9e-15 85.1 111 42.3
MBI04_g41911_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 9.6e-13 78.2 61 54.1
Hma1.2p1_1132F.1_g260340 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 3.1e-11 73.2 107 43.9
Hma1.2p1_1640F.1_g295066 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 3.1e-11 73.2 107 43.9
CDE11G0295 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 2.1e-07 60.5 56 48.2
Cre05.g231050 Chlamydomonas reinhardtii HOM05D004509 ORTHO05D005568 3.5e-07 59.7 101 35.6


User provided reference genes

Program Settings