Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_41216 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 0.0e+00 1448.7 845 100.0
SEGI_36052 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 7.4e-241 837.8 450 100.0
TAR626G0290 Trochodendron aralioides HOM05D003499 ORTHO05D004754 3.0e-202 709.5 798 51.3
GSVIVG01036698001 Vitis vinifera HOM05D003499 ORTHO05D004754 2.2e-197 693.3 785 51.2
Dinv42452 Davidia involucrata HOM05D003499 ORTHO05D004754 6.1e-195 685.3 781 52.1
Aqoxy1G01362 Aquilegia oxysepala HOM05D003499 ORTHO05D004754 9.7e-193 677.9 784 51.4
CiPaw.15G111600 Carya illinoinensis HOM05D003499 ORTHO05D004754 4.8e-192 675.6 812 49.6
Gohir.A01G100800 Gossypium hirsutum HOM05D003499 ORTHO05D004754 5.3e-191 672.2 802 49.4
Nn7g38420 Nelumbo nucifera HOM05D003499 ORTHO05D004754 7.0e-191 671.8 771 55.4
Gorai.002G110900 Gossypium raimondii HOM05D003499 ORTHO05D004754 9.1e-191 671.4 784 50.1
QL04p095880 Quercus lobata HOM05D003499 ORTHO05D004754 1.2e-190 671.0 822 49.5
Gohir.D01G085300 Gossypium hirsutum HOM05D003499 ORTHO05D004754 2.7e-190 669.8 784 50.0
Cfa017771 Carpinus fangiana HOM05D003499 ORTHO05D004754 1.7e-189 667.2 799 49.9
TWI38G0606 Tripterygium wilfordii HOM05D003499 ORTHO05D004754 1.1e-188 664.5 800 55.5
Aa31LG4G1710 Aethionema arabicum HOM05D003499 ORTHO05D004754 3.2e-188 662.9 796 48.2
AT1G79280 Arabidopsis thaliana HOM05D003499 ORTHO05D004754 5.5e-188 662.1 785 51.5
Duzib213G0086 Durio zibethinus HOM05D003499 ORTHO05D004754 5.5e-188 662.1 784 49.7
Potri.008G080900 Populus trichocarpa HOM05D003499 ORTHO05D004754 9.4e-188 661.4 803 50.4
AL2G39880 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 1.6e-187 660.6 799 50.1
CARHR072950 Cardamine hirsuta HOM05D003499 ORTHO05D004754 6.1e-187 658.7 804 49.0
CDE02G3941 Ceratophyllum demersum HOM05D003499 ORTHO05D004754 6.1e-187 658.7 791 49.9
C06p53180 Brassica napus HOM05D003499 ORTHO05D004754 8.0e-187 658.3 805 49.1
ATR1127G224 Amborella trichopoda HOM05D003499 ORTHO05D004754 3.0e-186 656.4 780 51.3
Thecc.07G189900 Theobroma cacao HOM05D003499 ORTHO05D004754 8.8e-186 654.8 783 49.8
Carub.0002s2615 Capsella rubella HOM05D003499 ORTHO05D004754 2.6e-185 653.3 801 50.4
Dinv19570 Davidia involucrata HOM05D003499 ORTHO05D004754 5.7e-185 652.1 761 51.2
Thhalv10017995m.g Eutrema salsugineum HOM05D003499 ORTHO05D004754 2.2e-184 650.2 783 47.8
MSTRG.14572 Avicennia marina HOM05D003499 ORTHO05D004754 4.8e-184 649.0 799 47.7
Manes.16G052800 Manihot esculenta HOM05D003499 ORTHO05D004754 6.3e-184 648.7 773 49.3
A07p44380 Brassica napus HOM05D003499 ORTHO05D004754 8.3e-184 648.3 805 48.9
BolC6t40336H Brassica oleracea HOM05D003499 ORTHO05D004754 1.4e-183 647.5 824 46.7
Ah.09g236940 Amaranthus hybridus HOM05D003499 ORTHO05D004754 1.0e-181 641.3 762 48.7
FAN21G2046 Fragaria x ananassa HOM05D003499 ORTHO05D004754 2.9e-181 639.8 792 47.7
FvH4_3g13850 Fragaria vesca HOM05D003499 ORTHO05D004754 5.0e-181 639.0 748 49.3
RcHm_v2.0_Chr5g0023031 Rosa chinensis HOM05D003499 ORTHO05D004754 6.6e-181 638.6 781 48.5
Hund21305 Selenicereus undatus HOM05D003499 ORTHO05D004754 8.6e-181 638.3 781 48.7
Actinidia26203 Actinidia chinensis HOM05D003499 ORTHO05D004754 1.5e-180 637.5 737 50.7
THA.LOC104813306 Tarenaya hassleriana HOM05D003499 ORTHO05D004754 1.9e-180 637.1 794 47.7
Eucgr.F04480 Eucalyptus grandis HOM05D003499 ORTHO05D004754 3.3e-180 636.3 797 47.7
Psat0s13g0320 Pisum sativum HOM05D003499 ORTHO05D004754 3.3e-180 636.3 786 47.5
Sc05g0008250 Simmondsia chinensis HOM05D003499 ORTHO05D004754 3.3e-180 636.3 727 50.8
EL10Ac8g19951 Beta vulgaris HOM05D003499 ORTHO05D004754 9.5e-180 634.8 781 47.5
MELO3C012583.2 Cucumis melo HOM05D003499 ORTHO05D004754 1.6e-179 634.0 776 48.6
Lalb_Chr25g0284181 Lupinus albus HOM05D003499 ORTHO05D004754 1.6e-179 634.0 786 47.7
CANSAT56G3760 Cannabis sativa HOM05D003499 ORTHO05D004754 4.7e-179 632.5 792 47.5
Lalb_Chr01g0015591 Lupinus albus HOM05D003499 ORTHO05D004754 6.1e-179 632.1 785 49.7
MD05G1240600 Malus domestica HOM05D003499 ORTHO05D004754 1.0e-178 631.3 781 48.7
BraA07t31947Z Brassica rapa HOM05D003499 ORTHO05D004754 1.4e-178 630.9 817 45.8
CsaV3_7G023140 Cucumis sativus L. HOM05D003499 ORTHO05D004754 1.8e-178 630.6 776 48.2
Ciclev10006542m.g Citrus clementina HOM05D003499 ORTHO05D004754 2.3e-178 630.2 739 49.9
Medtr2g063480 Medicago truncatula HOM05D003499 ORTHO05D004754 9.8e-177 624.8 763 50.2
Lj3g0016310 Lotus japonicus HOM05D003499 ORTHO05D004754 1.3e-176 624.4 787 46.9
Prupe.4G125000 Prunus persica HOM05D003499 ORTHO05D004754 3.7e-176 622.9 758 48.4
Atru.chr1.17 Acer truncatum HOM05D003499 ORTHO05D004754 1.4e-175 620.9 761 50.1
Oeu025990.2 Olea europaea HOM05D003499 ORTHO05D004754 3.1e-175 619.8 782 48.0
AUR62012541 Chenopodium quinoa HOM05D003499 ORTHO05D004754 9.2e-175 618.2 738 48.6
AUR62014655 Chenopodium quinoa HOM05D003499 ORTHO05D004754 1.6e-174 617.5 738 48.1
CiPaw.16G079000 Carya illinoinensis HOM05D003499 ORTHO05D004754 2.7e-174 616.7 816 46.3
FAN25G2460 Fragaria x ananassa HOM05D003499 ORTHO05D004754 5.9e-174 615.5 729 49.1
Glyma.08G162300 Glycine max HOM05D003499 ORTHO05D004754 7.8e-174 615.1 762 47.6
Sabra08G0060200 Salix brachista HOM05D003499 ORTHO05D004754 1.0e-173 614.8 790 48.6
VMungo1080G1290 Vigna mungo HOM05D003499 ORTHO05D004754 1.3e-173 614.4 753 47.7
Phvul.005G045700 Phaseolus vulgaris HOM05D003499 ORTHO05D004754 3.8e-173 612.8 752 50.8
FAN16G2389 Fragaria x ananassa HOM05D003499 ORTHO05D004754 5.0e-173 612.5 809 45.7
Peaxi162Scf00579g00316 Petunia axillaris HOM05D003499 ORTHO05D004754 6.6e-173 612.1 798 47.1
Nitab4.5_0005627g0040 Nicotiana tabacum HOM05D003499 ORTHO05D004754 1.5e-172 610.9 798 46.7
AagrBONN_evm.TU.Sc2ySwM_344.3653 Anthoceros agrestis HOM05D003499 ORTHO05D004754 1.9e-172 610.5 801 46.6
Nitab4.5_0002333g0110 Nicotiana tabacum HOM05D003499 ORTHO05D004754 2.5e-172 610.1 798 46.7
Sed0001737 Sechium edule HOM05D003499 ORTHO05D004754 9.5e-172 608.2 805 45.6
Glyma.15G265300 Glycine max HOM05D003499 ORTHO05D004754 4.7e-171 605.9 767 46.4
Cc00_g09120 Coffea canephora HOM05D003499 ORTHO05D004754 1.4e-170 604.4 783 47.0
HanXRQChr14g0459251 Helianthus annuus HOM05D003499 ORTHO05D004754 1.4e-170 604.4 802 46.0
Hma1.2p1_0151F.1_g066930 Hydrangea macrophylla HOM05D003499 ORTHO05D004754 1.4e-170 604.4 783 47.4
Migut.H01651 Erythranthe guttata HOM05D003499 ORTHO05D004754 4.0e-170 602.8 799 45.3
CAN.G374.15 Capsicum annuum HOM05D003499 ORTHO05D004754 5.2e-170 602.4 799 46.2
PGSC0003DMG400016328 Solanum tuberosum HOM05D003499 ORTHO05D004754 3.4e-169 599.7 798 45.4
ClCG09G022890 Citrullus lanatus HOM05D003499 ORTHO05D004754 5.8e-169 599.0 776 46.4
arahy.Tifrunner.gnm1.ann1.DHQL63 Arachis hypogaea HOM05D003499 ORTHO05D004754 2.9e-168 596.7 789 45.5
Sopen06g018680 Solanum pennellii HOM05D003499 ORTHO05D004754 2.9e-168 596.7 798 45.1
arahy.Tifrunner.gnm1.ann1.LW990M Arachis hypogaea HOM05D003499 ORTHO05D004754 8.3e-168 595.1 789 45.8
Pp3c8_8020 Physcomitrium patens HOM05D003499 ORTHO05D004754 8.3e-168 595.1 797 44.5
FAN11G2210 Fragaria x ananassa HOM05D003499 ORTHO05D004754 1.9e-167 594.0 773 46.1
TPR.G3598 Trifolium pratense HOM05D003499 ORTHO05D004754 3.2e-167 593.2 756 46.4
DCAR_013704 Daucus carota HOM05D003499 ORTHO05D004754 5.4e-167 592.4 795 45.7
Sp5g34360 Schrenkiella parvula HOM05D003499 ORTHO05D004754 1.6e-166 590.9 806 47.8
SGA_v2.0_scaffold239G43999 Striga asiatica HOM05D003499 ORTHO05D004754 2.7e-166 590.1 841 43.3
ECA233G1650 Erigeron canadensis HOM05D003499 ORTHO05D004754 1.0e-165 588.2 784 45.2
PGR031G3814 Punica granatum HOM05D003499 ORTHO05D004754 2.3e-165 587.0 798 44.4
C06p29970 Brassica napus HOM05D003499 ORTHO05D004754 1.4e-162 577.8 801 46.6
Rhsim09G0000500 Rhododendron simsii HOM05D003499 ORTHO05D004754 3.1e-162 576.6 880 44.4
Mapoly0042s0082 Marchantia polymorpha HOM05D003499 ORTHO05D004754 4.0e-162 576.2 809 44.0
A07p27200 Brassica napus HOM05D003499 ORTHO05D004754 7.5e-161 572.0 801 46.4
Lsat_1_v5_gn_8_41780 Lactuca sativa HOM05D003499 ORTHO05D004754 8.3e-160 568.5 759 45.7
PSO675G8338 Papaver somniferum HOM05D003499 ORTHO05D004754 1.9e-159 567.4 782 45.3
BolC6t38157H Brassica oleracea HOM05D003499 ORTHO05D004754 1.6e-158 564.3 829 42.8
BraA07t30364Z Brassica rapa HOM05D003499 ORTHO05D004754 1.0e-157 561.6 825 45.1
MBI02_g17882_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 6.4e-152 542.3 526 59.1
HPP92_017349 Vanilla planifolia HOM05D003499 ORTHO05D004754 5.4e-151 539.3 780 46.0
SMO203G0250 Selaginella moellendorffii HOM05D003499 ORTHO05D004754 1.2e-150 538.1 781 44.6
HanXRQChr08g0213121 Helianthus annuus HOM05D003499 ORTHO05D004754 2.1e-150 537.3 725 45.5
BcaC08g45365 Brassica carinata HOM05D003499 ORTHO05D004754 1.1e-148 531.6 800 44.6
BcaB02g07209 Brassica carinata HOM05D003499 ORTHO05D004754 4.0e-146 523.1 785 45.5
PSO541G3284 Papaver somniferum HOM05D003499 ORTHO05D004754 2.9e-144 516.9 783 42.9
Os02g0741500 Oryza sativa ssp. japonica HOM05D003499 ORTHO05D004754 2.7e-142 510.4 843 40.0
Zm00001eb194730 Zea mays HOM05D003499 ORTHO05D004754 2.2e-136 490.7 721 41.5
AL2G39750 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 2.3e-133 480.7 537 50.5
unitig_578.g16338 Utricularia gibba HOM05D003499 ORTHO05D004754 5.8e-129 466.1 785 41.0
Haze_18466 Corylus avellana HOM05D003499 ORTHO05D004754 2.1e-118 431.0 1085 32.5
vmacro21306 Vaccinium macrocarpon HOM05D003499 ORTHO05D004754 7.4e-116 422.5 713 39.7
Sabra16G0005400 Salix brachista HOM05D000228 ORTHO05D001122 2.7e-110 404.1 633 44.4
HPP92_017337 Vanilla planifolia HOM05D003499 ORTHO05D004754 1.6e-107 394.8 638 42.8
SEGI_27786 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 2.5e-103 380.9 274 100.0
MD10G1218800 Malus domestica HOM05D003499 ORTHO05D004754 2.7e-102 377.5 481 50.3
Solyc06g053570.2 Solanum lycopersicum HOM05D003499 ORTHO05D004754 5.7e-100 369.8 422 49.5
CBR_g33916 Chara braunii HOM05D003499 ORTHO05D004754 1.3e-96 358.6 506 43.5
Oeu025989.1 Olea europaea HOM05D003499 ORTHO05D004754 2.6e-84 317.8 469 43.3
Ca_03376_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 5.9e-73 280.0 420 41.9
Lj2C7G1 Lonicera japonica HOM05D003499 ORTHO05D004754 5.5e-71 273.5 291 51.5
COL.COLO4_25003 Corchorus olitorius HOM05D003499 ORTHO05D004754 5.2e-69 266.9 794 30.1
Ca_03377_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 4.4e-68 263.8 349 45.3
Sabra11G0075400 Salix brachista HOM05D000228 ORTHO05D001122 1.0e-64 252.7 477 38.8
Sabra19G0031300 Salix brachista HOM05D000228 ORTHO05D001122 1.1e-63 249.2 324 49.4
Sabra16G0132400 Salix brachista HOM05D000228 ORTHO05D001122 1.1e-58 232.6 476 37.4
MD10G1218600 Malus domestica HOM05D003499 ORTHO05D004754 1.3e-43 182.6 132 68.9
Mapoly2166s0001 Marchantia polymorpha HOM05D003499 ORTHO05D004754 1.9e-39 168.7 127 66.9
HanXRQChr11g0329221 Helianthus annuus HOM05D003499 ORTHO05D004754 2.9e-35 154.8 137 59.1
PRCOL_00003349 Prasinoderma coloniale HOM05D003499 ORTHO05D004754 3.6e-30 137.9 784 24.1
MCO03G110 Micromonas commoda HOM05D003499 ORTHO05D004754 4.2e-26 124.4 819 21.1
AL2G39760 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 1.6e-22 112.5 173 38.7
Haze_18467 Corylus avellana HOM05D003499 ORTHO05D004754 1.6e-22 112.5 71 77.5
vmacro21307 Vaccinium macrocarpon HOM05D003499 ORTHO05D004754 2.8e-22 111.7 71 80.3
MBI12_g17629_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 4.8e-22 110.9 129 48.1
HPP92_017338 Vanilla planifolia HOM05D003499 ORTHO05D004754 6.4e-19 100.5 117 49.6
MBI07_g23017_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 1.4e-18 99.4 143 44.1
Sabra19G0031200 Salix brachista HOM05D000228 ORTHO05D001122 9.3e-18 96.7 226 33.6
SHI33381 Sapria himalayana HOM05D003499 ORTHO05D004754 5.6e-15 87.4 134 38.8
SHI33383 Sapria himalayana HOM05D000105 ORTHO05D000023 3.6e-14 84.7 168 36.3
CBR_g33917 Chara braunii HOM05D003499 ORTHO05D004754 8.1e-14 83.6 156 36.5
MBI18_g27146_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 2.4e-13 82.0 176 33.0
MBI18_g13000_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 2.0e-12 79.0 181 35.9
MBI16_g34347_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 2.2e-11 75.5 98 42.9
MBI17_g19041_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 8.4e-11 73.6 78 52.6
MBI03_g24553_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 1.4e-10 72.8 78 52.6
Sabra16G0132500 Salix brachista HOM05D000228 ORTHO05D001122 4.2e-10 71.2 97 49.5
MBI14_g41599_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 3.0e-08 65.1 78 46.2
Medtr2g450170 Medicago truncatula HOM05D003499 ORTHO05D004754 5.1e-08 64.3 62 53.2
Cpa.g.sc569.2 Carica papaya HOM05D003499 ORTHO05D004754 8.7e-08 63.5 131 36.6
MBI10_g08630_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 1.9e-07 62.4 112 39.3
VMungo1127G1758 Vigna mungo HOM05D003499 ORTHO05D011720 1.6e-06 59.3 229 27.5
Phvul.011G179500 Phaseolus vulgaris HOM05D000631 ORTHO05D011720 3.7e-06 58.2 241 26.6
Glyma.15G214700 Glycine max HOM05D014746 ORTHO05D011720 4.8e-06 57.8 228 26.3
MBI02_g41948_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 6.2e-06 57.4 49 61.2
SMO274G0070 Selaginella moellendorffii HOM05D017119 ORTHO05D004754 6.2e-06 57.4 86 40.7
Glyma.08G234500 Glycine max HOM05D003499 ORTHO05D011720 8.1e-06 57.0 240 24.6


User provided reference genes

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