Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 1.8e-77 292.4 135 100.0
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 1.5e-26 123.2 69 81.2
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 2.5e-26 122.5 69 81.2
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 7.3e-26 120.9 69 78.3
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 7.3e-26 120.9 69 78.3
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 9.6e-26 120.6 69 78.3
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 9.6e-26 120.6 69 78.3
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 9.6e-26 120.6 69 79.7
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 1.3e-25 120.2 69 78.3
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 1.3e-25 120.2 69 78.3
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 1.6e-25 119.8 69 78.3
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 1.6e-25 119.8 69 78.3
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 1.6e-25 119.8 69 78.3
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 2.1e-25 119.4 69 76.8
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 2.8e-25 119.0 69 78.3
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 2.8e-25 119.0 69 78.3
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 4.8e-25 118.2 69 76.8
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 4.8e-25 118.2 69 75.4
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 4.8e-25 118.2 69 76.8
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 4.8e-25 118.2 69 76.8
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 4.8e-25 118.2 69 76.8
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 6.2e-25 117.9 69 76.8
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 6.2e-25 117.9 69 76.8
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 6.2e-25 117.9 69 78.3
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 6.2e-25 117.9 69 75.4
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 8.1e-25 117.5 69 75.4
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 8.1e-25 117.5 69 76.8
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 8.1e-25 117.5 69 75.4
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 1.1e-24 117.1 69 75.4
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 1.1e-24 117.1 69 75.4
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 1.1e-24 117.1 69 76.8
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 1.1e-24 117.1 69 75.4
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 1.4e-24 116.7 69 75.4
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 1.8e-24 116.3 69 75.4
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 1.8e-24 116.3 69 75.4
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 1.8e-24 116.3 69 73.9
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 1.8e-24 116.3 69 75.4
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 2.4e-24 115.9 69 75.4
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 2.4e-24 115.9 69 75.4
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 2.4e-24 115.9 69 75.4
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 2.4e-24 115.9 69 75.4
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 2.4e-24 115.9 69 75.4
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 2.4e-24 115.9 69 75.4
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 2.4e-24 115.9 69 76.8
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 3.1e-24 115.5 69 75.4
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 3.1e-24 115.5 69 73.9
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 3.1e-24 115.5 69 73.9
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 4.0e-24 115.2 69 73.9
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 4.0e-24 115.2 69 73.9
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 4.0e-24 115.2 69 73.9
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 4.0e-24 115.2 69 73.9
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 4.0e-24 115.2 69 73.9
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 4.0e-24 115.2 69 75.4
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 4.0e-24 115.2 69 73.9
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 4.0e-24 115.2 69 73.9
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 4.0e-24 115.2 69 75.4
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 4.0e-24 115.2 69 73.9
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 5.3e-24 114.8 69 73.9
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 5.3e-24 114.8 69 73.9
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 5.3e-24 114.8 69 73.9
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 5.3e-24 114.8 69 75.4
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 5.3e-24 114.8 69 73.9
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 5.3e-24 114.8 69 73.9
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 6.9e-24 114.4 69 73.9
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 6.9e-24 114.4 69 73.9
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 6.9e-24 114.4 69 73.9
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 6.9e-24 114.4 69 75.4
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 6.9e-24 114.4 69 72.5
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 6.9e-24 114.4 69 72.5
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 6.9e-24 114.4 69 73.9
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 9.0e-24 114.0 71 71.8
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 9.0e-24 114.0 69 73.9
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 9.0e-24 114.0 69 73.9
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 9.0e-24 114.0 69 73.9
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 9.0e-24 114.0 69 73.9
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 9.0e-24 114.0 69 73.9
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 9.0e-24 114.0 69 73.9
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 9.0e-24 114.0 69 73.9
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 1.2e-23 113.6 69 72.5
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 1.2e-23 113.6 69 73.9
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 1.2e-23 113.6 69 73.9
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 1.2e-23 113.6 69 73.9
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 1.5e-23 113.2 69 73.9
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 2.0e-23 112.8 69 73.9
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 2.0e-23 112.8 69 73.9
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 2.0e-23 112.8 69 73.9
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 2.0e-23 112.8 69 72.5
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 2.0e-23 112.8 69 73.9
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 2.0e-23 112.8 69 73.9
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 2.6e-23 112.5 69 73.9
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 2.6e-23 112.5 69 73.9
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 2.6e-23 112.5 69 71.0
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 2.6e-23 112.5 69 71.0
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 2.6e-23 112.5 69 71.0
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 3.4e-23 112.1 69 73.9
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 3.4e-23 112.1 69 72.5
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 4.5e-23 111.7 69 73.9
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 4.5e-23 111.7 69 73.9
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 5.8e-23 111.3 69 72.5
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 7.6e-23 110.9 69 69.6
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 7.6e-23 110.9 69 72.5
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 7.6e-23 110.9 69 72.5
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 7.6e-23 110.9 69 71.0
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 7.6e-23 110.9 69 71.0
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 7.6e-23 110.9 69 71.0
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 7.6e-23 110.9 69 71.0
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 2.2e-22 109.4 69 72.5
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 2.2e-22 109.4 69 69.6
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 2.2e-22 109.4 69 72.5
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 2.2e-22 109.4 69 72.5
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 2.9e-22 109.0 69 71.0
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 3.8e-22 108.6 69 72.5
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 4.9e-22 108.2 69 69.6
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.9e-22 108.2 69 71.0
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 6.4e-22 107.8 69 71.0
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 6.4e-22 107.8 69 71.0
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 8.4e-22 107.5 75 68.0
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 8.4e-22 107.5 69 71.0
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 1.9e-21 106.3 69 71.0
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 1.9e-21 106.3 69 71.0
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 2.4e-21 105.9 69 69.6
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 2.4e-21 105.9 69 71.0
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.2e-21 105.1 69 69.6
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.2e-21 105.1 69 69.6
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 4.2e-21 105.1 69 69.6
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 4.2e-21 105.1 69 69.6
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 1.6e-20 103.2 70 70.0
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 2.7e-20 102.4 71 66.2
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 3.5e-20 102.1 69 68.1
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 2.3e-19 99.4 69 68.1
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 2.3e-19 99.4 70 67.1
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 1.9e-18 96.3 69 62.3
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 2.1e-17 92.8 69 62.3
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 4.8e-17 91.7 71 62.0
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 3.4e-15 85.5 65 63.1
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.7e-14 83.2 63 58.7
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 9.6e-10 67.4 73 43.8
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 3.7e-09 65.5 67 49.3
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.4e-08 62.8 34 85.3
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.7e-06 56.6 31 87.1


User provided reference genes

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