Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34431 Sequoiadendron giganteum HOM05D001013 ORTHO05D004836 1.6e-160 569.3 280 100.0
SEGI_06462 Sequoiadendron giganteum HOM05D001013 ORTHO05D004597 1.2e-25 121.3 143 48.3
SEGI_00620 Sequoiadendron giganteum HOM05D000055 ORTHO05D000057 2.4e-23 113.6 54 96.3
SEGI_26836 Sequoiadendron giganteum HOM05D000404 ORTHO05D002003 1.2e-22 111.3 50 100.0
SEGI_20252 Sequoiadendron giganteum HOM05D000861 ORTHO05D007385 1.6e-22 110.9 51 96.1
SEGI_22802 Sequoiadendron giganteum HOM05D000038 ORTHO05D003992 1.6e-22 110.9 68 77.9
SEGI_34471 Sequoiadendron giganteum HOM05D001920 ORTHO05D004895 1.6e-22 110.9 50 98.0
SEGI_23268 Sequoiadendron giganteum HOM05D008967 ORTHO05D011167 2.1e-22 110.5 50 98.0
EL10Ac4g10268 Beta vulgaris HOM05D001013 ORTHO05D004597 3.5e-22 109.8 162 40.1
SEGI_03071 Sequoiadendron giganteum HOM05D001045 ORTHO05D004836 4.6e-22 109.4 49 100.0
EL10Ac4g10284 Beta vulgaris HOM05D001013 ORTHO05D004597 7.8e-22 108.6 162 39.5
SEGI_00419 Sequoiadendron giganteum HOM05D008967 ORTHO05D006699 1.3e-21 107.8 49 98.0
SEGI_28347 Sequoiadendron giganteum HOM05D005437 ORTHO05D006699 2.3e-21 107.1 49 98.0
Peaxi162Scf01427g00007 Petunia axillaris HOM05D001013 ORTHO05D004597 3.0e-21 106.7 199 34.7
Nitab4.5_0001800g0150 Nicotiana tabacum HOM05D001013 ORTHO05D004597 3.9e-21 106.3 172 37.8
SEGI_07512 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 3.9e-21 106.3 49 95.9
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 5.1e-21 105.9 162 38.9
Hund22038 Selenicereus undatus HOM05D001013 ORTHO05D004597 5.1e-21 105.9 188 34.0
Ah.06g194350 Amaranthus hybridus HOM05D001013 ORTHO05D004597 6.6e-21 105.5 162 38.9
QL01p005011 Quercus lobata HOM05D001013 ORTHO05D004597 8.6e-21 105.1 155 39.4
Lsat_1_v5_gn_2_97481 Lactuca sativa HOM05D001013 ORTHO05D004597 1.5e-20 104.4 159 38.4
Lsat_1_v5_gn_2_97521 Lactuca sativa HOM05D001013 ORTHO05D004597 1.5e-20 104.4 159 38.4
EL10Ac4g10159 Beta vulgaris HOM05D001013 ORTHO05D004597 2.5e-20 103.6 162 38.3
Ciclev10014051m.g Citrus clementina HOM05D001013 ORTHO05D004597 2.5e-20 103.6 136 41.2
MSTRG.18423 Avicennia marina HOM05D001013 ORTHO05D004597 3.3e-20 103.2 144 40.3
Cc07_g19610 Coffea canephora HOM05D001013 ORTHO05D004597 3.3e-20 103.2 153 39.2
Lj2A632G19 Lonicera japonica HOM05D001013 ORTHO05D004597 3.3e-20 103.2 176 36.4
Nitab4.5_0006994g0020 Nicotiana tabacum HOM05D001013 ORTHO05D004597 4.3e-20 102.8 199 34.2
Solyc11g065920.2 Solanum lycopersicum HOM05D001013 ORTHO05D004597 4.3e-20 102.8 172 36.0
Sopen11g025660 Solanum pennellii HOM05D001013 ORTHO05D004597 4.3e-20 102.8 172 36.0
CSS0021836 Camellia sinensis var. sinensis HOM05D001013 ORTHO05D004597 5.6e-20 102.4 159 37.1
TAR636G2042 Trochodendron aralioides HOM05D001013 ORTHO05D004597 5.6e-20 102.4 160 36.2
DCAR_002067 Daucus carota HOM05D001013 ORTHO05D004597 7.3e-20 102.1 188 35.1
HanXRQChr07g0197511 Helianthus annuus HOM05D001013 ORTHO05D004597 9.6e-20 101.7 137 40.1
CAN.G327.12 Capsicum annuum HOM05D001013 ORTHO05D004597 1.2e-19 101.3 143 38.5
Hma1.2p1_0861F.1_g229750 Hydrangea macrophylla HOM05D001013 ORTHO05D004597 1.2e-19 101.3 109 45.0
Lalb_Chr24g0397071 Lupinus albus HOM05D001013 ORTHO05D004597 1.2e-19 101.3 143 38.5
Sc06g0004540 Simmondsia chinensis HOM05D001013 ORTHO05D004597 1.2e-19 101.3 137 39.4
Lj3g0023347 Lotus japonicus HOM05D001013 ORTHO05D004597 1.6e-19 100.9 157 38.2
SGA_v2.0_scaffold247G44871 Striga asiatica HOM05D001013 ORTHO05D004597 1.6e-19 100.9 157 38.9
Cpa.g.sc84.69 Carica papaya HOM05D001013 ORTHO05D004597 2.1e-19 100.5 136 40.4
AUR62019284 Chenopodium quinoa HOM05D001013 ORTHO05D004597 2.1e-19 100.5 160 36.2
Sopen11g025670 Solanum pennellii HOM05D001013 ORTHO05D004597 2.1e-19 100.5 170 36.5
CiPaw.14G119800 Carya illinoinensis HOM05D001013 ORTHO05D004597 3.6e-19 99.8 154 36.4
COL.COLO4_24880 Corchorus olitorius HOM05D001013 ORTHO05D004597 3.6e-19 99.8 136 39.0
Dinv36267 Davidia involucrata HOM05D001013 ORTHO05D004597 3.6e-19 99.8 159 36.5
AUR62019282 Chenopodium quinoa HOM05D001013 ORTHO05D004597 4.7e-19 99.4 160 36.2
ATR0605G208 Amborella trichopoda HOM05D001013 ORTHO05D004597 6.2e-19 99.0 151 37.1
AUR62000107 Chenopodium quinoa HOM05D001013 ORTHO05D004597 6.2e-19 99.0 160 35.6
Solyc11g065930.3 Solanum lycopersicum HOM05D001013 ORTHO05D004597 6.2e-19 99.0 170 35.9
Actinidia16323 Actinidia chinensis HOM05D001013 ORTHO05D004597 8.1e-19 98.6 136 40.4
Glyma.15G034000 Glycine max HOM05D001013 ORTHO05D004597 8.1e-19 98.6 158 36.1
GSVIVG01025282001 Vitis vinifera HOM05D001013 ORTHO05D004597 1.1e-18 98.2 141 38.3
CDE05G3370 Ceratophyllum demersum HOM05D001013 ORTHO05D004597 1.4e-18 97.8 155 35.5
Eucgr.J00780 Eucalyptus grandis HOM05D001013 ORTHO05D004597 1.4e-18 97.8 206 32.5
Eucgr.J00782 Eucalyptus grandis HOM05D001013 ORTHO05D004597 1.4e-18 97.8 206 32.5
Nn2g15465 Nelumbo nucifera HOM05D001013 ORTHO05D004597 1.4e-18 97.8 149 36.9
TPR.G6821 Trifolium pratense HOM05D001013 ORTHO05D004597 1.4e-18 97.8 136 39.7
Manes.06G165500 Manihot esculenta HOM05D001013 ORTHO05D004597 1.8e-18 97.4 136 39.0
SHI29746 Sapria himalayana HOM05D001013 ORTHO05D004597 1.8e-18 97.4 132 41.7
Migut.D00593 Erythranthe guttata HOM05D001013 ORTHO05D004597 2.4e-18 97.1 144 37.5
Gohir.D09G111500 Gossypium hirsutum HOM05D001013 ORTHO05D004597 2.4e-18 97.1 143 37.1
Gorai.006G129200 Gossypium raimondii HOM05D001013 ORTHO05D004597 2.4e-18 97.1 143 37.1
Thecc.09G231300 Theobroma cacao HOM05D001013 ORTHO05D004597 2.4e-18 97.1 156 35.3
TAR633G1179 Trochodendron aralioides HOM05D001013 ORTHO05D004597 2.4e-18 97.1 154 36.4
Gohir.A09G114800 Gossypium hirsutum HOM05D001013 ORTHO05D004597 3.1e-18 96.7 143 37.1
Hma1.2p1_0861F.1_g229780 Hydrangea macrophylla HOM05D001013 ORTHO05D004597 3.1e-18 96.7 137 38.0
vmacro04203 Vaccinium macrocarpon HOM05D001013 ORTHO05D004597 3.1e-18 96.7 162 34.0
Ca_01292_v3 Cicer arietinum L. HOM05D001013 ORTHO05D004597 4.0e-18 96.3 154 35.7
ECA238G2654 Erigeron canadensis HOM05D001013 ORTHO05D004597 4.0e-18 96.3 144 38.9
Medtr2g098030 Medicago truncatula HOM05D001013 ORTHO05D004597 4.0e-18 96.3 136 39.0
Phvul.L009543 Phaseolus vulgaris HOM05D001013 ORTHO05D004597 4.0e-18 96.3 144 36.8
TWI34G0448 Tripterygium wilfordii HOM05D001013 ORTHO05D004597 4.0e-18 96.3 136 39.0
CSS0033412 Camellia sinensis var. sinensis HOM05D001013 ORTHO05D004597 5.2e-18 95.9 159 35.2
MD03G1177200 Malus domestica HOM05D001013 ORTHO05D004597 5.2e-18 95.9 141 39.7
Psat0ss3005g0040 Pisum sativum HOM05D001013 ORTHO05D004597 6.8e-18 95.5 136 39.0
SEGI_29555 Sequoiadendron giganteum HOM05D000240 ORTHO05D385032 6.8e-18 95.5 78 61.5
Haze_23121 Corylus avellana HOM05D001013 ORTHO05D004597 8.9e-18 95.1 154 35.7
Potri.009G054600 Populus trichocarpa HOM05D001013 ORTHO05D004597 8.9e-18 95.1 151 36.4
RcHm_v2.0_Chr5g0051661 Rosa chinensis HOM05D001013 ORTHO05D004597 8.9e-18 95.1 141 39.0
VMungo1080G0609 Vigna mungo HOM05D001013 ORTHO05D004597 8.9e-18 95.1 144 36.1
AagrBONN_evm.TU.Sc2ySwM_228.138 Anthoceros agrestis HOM05D001013 ORTHO05D004597 1.5e-17 94.4 134 39.6
FvH4_3g29000 Fragaria vesca HOM05D001013 ORTHO05D004597 1.5e-17 94.4 141 39.0
FAN11G2909 Fragaria x ananassa HOM05D001013 ORTHO05D004597 1.5e-17 94.4 141 39.0
Glyma.13G340300 Glycine max HOM05D001013 ORTHO05D004597 1.5e-17 94.4 144 37.5
Sabra09G0039900 Salix brachista HOM05D001013 ORTHO05D004597 1.5e-17 94.4 143 37.1
Atru.chr3.2746 Acer truncatum HOM05D001013 ORTHO05D004597 2.0e-17 94.0 150 36.0
FAN21G2353 Fragaria x ananassa HOM05D001013 ORTHO05D004597 2.0e-17 94.0 141 39.0
FAN25G0972 Fragaria x ananassa HOM05D001013 ORTHO05D004597 2.0e-17 94.0 141 39.0
arahy.Tifrunner.gnm1.ann1.I21QA9 Arachis hypogaea HOM05D001013 ORTHO05D004597 2.6e-17 93.6 155 33.5
PSO384G2146 Papaver somniferum HOM05D001013 ORTHO05D004597 2.6e-17 93.6 165 37.0
Prupe.4G245700 Prunus persica HOM05D001013 ORTHO05D004597 2.6e-17 93.6 141 39.0
Sed0014521 Sechium edule HOM05D001013 ORTHO05D004597 2.6e-17 93.6 169 34.9
Cfa009756 Carpinus fangiana HOM05D001013 ORTHO05D004597 3.4e-17 93.2 154 35.1
Os03g0429800 Oryza sativa ssp. japonica HOM05D001013 ORTHO05D004597 3.4e-17 93.2 154 35.1
PSO384G0041 Papaver somniferum HOM05D001013 ORTHO05D004597 3.4e-17 93.2 165 37.0
Rhsim13G0222300 Rhododendron simsii HOM05D001013 ORTHO05D004597 3.4e-17 93.2 162 32.7
SEGI_32718 Sequoiadendron giganteum HOM05D000240 ORTHO05D002608 4.4e-17 92.8 67 67.2
MD11G1197900 Malus domestica HOM05D001013 ORTHO05D004597 5.8e-17 92.4 169 35.5
Aqoxy1G00274 Aquilegia oxysepala HOM05D001013 ORTHO05D004597 7.6e-17 92.0 142 36.6
PGR119G0568 Punica granatum HOM05D001013 ORTHO05D004597 7.6e-17 92.0 142 37.3
MD11G1161000 Malus domestica HOM05D001013 ORTHO05D004597 9.9e-17 91.7 136 39.0
Duzib170G0402 Durio zibethinus HOM05D001013 ORTHO05D004597 1.3e-16 91.3 132 37.1
HPP92_023576 Vanilla planifolia HOM05D001013 ORTHO05D004597 1.7e-16 90.9 160 33.8
ClCG03G013290 Citrullus lanatus HOM05D001013 ORTHO05D004597 2.9e-16 90.1 143 36.4
arahy.Tifrunner.gnm1.ann1.EX6ZD6 Arachis hypogaea HOM05D001013 ORTHO05D004597 3.8e-16 89.7 155 32.3
CANSAT01G2178 Cannabis sativa HOM05D001013 ORTHO05D004597 1.1e-15 88.2 136 37.5
CARHR243170 Cardamine hirsuta HOM05D001013 ORTHO05D004597 1.1e-15 88.2 143 33.6
THA.LOC104817905 Tarenaya hassleriana HOM05D001013 ORTHO05D004597 1.1e-15 88.2 135 37.0
Carub.0007s0540 Capsella rubella HOM05D001013 ORTHO05D004597 3.2e-15 86.7 143 34.3
Aa31LG2G15640 Aethionema arabicum HOM05D001013 ORTHO05D004597 4.2e-15 86.3 143 32.9
AT4G34900 Arabidopsis thaliana HOM05D001013 ORTHO05D004597 4.2e-15 86.3 143 33.6
Psat5g286360 Pisum sativum HOM05D001013 ORTHO05D004597 4.2e-15 86.3 121 38.8
AL6G50970 Arabidopsis lyrata HOM05D001013 ORTHO05D004597 7.1e-15 85.5 143 33.6
MELO3C015199.2 Cucumis melo HOM05D001013 ORTHO05D004597 9.3e-15 85.1 136 34.6
Sp7g32650 Schrenkiella parvula HOM05D001013 ORTHO05D004597 1.2e-14 84.7 136 33.8
C01p03910 Brassica napus HOM05D001013 ORTHO05D004597 1.6e-14 84.3 136 34.6
BolC1t00384H Brassica oleracea HOM05D001013 ORTHO05D004597 1.6e-14 84.3 136 34.6
BcaNung00646 Brassica carinata HOM05D001013 ORTHO05D004597 2.1e-14 84.0 136 33.8
A01p03620 Brassica napus HOM05D001013 ORTHO05D004597 2.1e-14 84.0 136 33.8
BraA01t00348Z Brassica rapa HOM05D001013 ORTHO05D004597 2.1e-14 84.0 136 33.8
SEGI_21888 Sequoiadendron giganteum HOM05D001013 ORTHO05D004409 2.1e-14 84.0 102 49.0
AT4G34890 Arabidopsis thaliana HOM05D001013 ORTHO05D004597 2.7e-14 83.6 143 32.9
CsaV3_1G042760 Cucumis sativus L. HOM05D001013 ORTHO05D004597 2.7e-14 83.6 136 34.6
AL7G16310 Arabidopsis lyrata HOM05D001013 ORTHO05D004597 4.6e-14 82.8 143 32.9
BcaB01g02072 Brassica carinata HOM05D001013 ORTHO05D004597 4.6e-14 82.8 143 32.2
Thhalv10024224m.g Eutrema salsugineum HOM05D001013 ORTHO05D004597 6.0e-14 82.4 143 31.5
BcaC04g24043 Brassica carinata HOM05D001013 ORTHO05D004597 7.8e-14 82.0 136 32.4
Mapoly0014s0136 Marchantia polymorpha HOM05D001013 ORTHO05D004597 7.8e-14 82.0 169 32.0
CARHR250380 Cardamine hirsuta HOM05D001013 ORTHO05D004597 1.0e-13 81.6 143 32.9
C09p01710 Brassica napus HOM05D001013 ORTHO05D004597 1.3e-13 81.3 135 32.6
BolC9t53105H Brassica oleracea HOM05D001013 ORTHO05D004597 1.3e-13 81.3 135 32.6
BraA09t35819Z Brassica rapa HOM05D001013 ORTHO05D004597 1.3e-13 81.3 136 32.4
SMO351G0580 Selaginella moellendorffii HOM05D001013 ORTHO05D004597 1.3e-13 81.3 153 33.3
unitig_90.g27489 Utricularia gibba HOM05D001013 ORTHO05D004597 1.3e-13 81.3 137 36.5
Pp3c20_16340 Physcomitrium patens HOM05D001013 ORTHO05D004597 5.1e-13 79.3 144 34.0
A09p01610 Brassica napus HOM05D001013 ORTHO05D004597 8.7e-13 78.6 136 31.6
EL10Ac4g10132 Beta vulgaris HOM05D001013 ORTHO05D004597 9.0e-10 68.6 59 55.9
EL10Ac4g10154 Beta vulgaris HOM05D001013 ORTHO05D004597 9.0e-10 68.6 59 55.9
MCO15G310 Micromonas commoda HOM05D001013 ORTHO05D004597 1.5e-09 67.8 147 29.3
CBR_g30958 Chara braunii HOM05D001013 ORTHO05D004597 9.9e-09 65.1 159 29.6
ECA238G2169 Erigeron canadensis HOM05D001013 ORTHO05D004597 2.2e-08 63.9 68 45.6
SEGI_08506 Sequoiadendron giganteum HOM05D001013 ORTHO05D004597 2.2e-08 63.9 40 72.5
Cre12.g545101 Chlamydomonas reinhardtii HOM05D001013 ORTHO05D004597 1.9e-07 60.8 162 26.5
Mapoly0018s0024 Marchantia polymorpha HOM05D001013 ORTHO05D016001 7.1e-07 58.9 112 33.0


User provided reference genes

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