Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33287 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 8.4e-176 620.2 296 100.0
Mapoly0014s0220 Marchantia polymorpha HOM05D000006 ORTHO05D004030 5.3e-77 292.0 206 68.9
Pp3c2_37980 Physcomitrium patens HOM05D000006 ORTHO05D004030 8.4e-75 284.6 210 67.1
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.3e-72 277.3 206 63.1
SEGI_04115 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 2.5e-66 256.5 127 95.3
Cre13.g587150 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 4.2e-66 255.8 205 59.5
TWI79G1190 Tripterygium wilfordii HOM05D000006 ORTHO05D004030 9.3e-66 254.6 205 61.0
SEGI_25942 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 1.2e-65 254.2 205 61.0
PGR142G3648 Punica granatum HOM05D000006 ORTHO05D004030 1.6e-65 253.8 205 61.0
Cfa015957 Carpinus fangiana HOM05D000006 ORTHO05D004030 2.1e-65 253.4 205 61.5
CiPaw.06G024600 Carya illinoinensis HOM05D000006 ORTHO05D004030 2.1e-65 253.4 205 61.5
Haze_00526 Corylus avellana HOM05D000006 ORTHO05D004030 2.1e-65 253.4 205 61.5
Dinv27386 Davidia involucrata HOM05D000006 ORTHO05D004030 2.1e-65 253.4 206 60.2
HPP92_004738 Vanilla planifolia HOM05D000006 ORTHO05D004030 2.1e-65 253.4 205 60.5
Aa31LG3G17360 Aethionema arabicum HOM05D000006 ORTHO05D004030 2.7e-65 253.1 205 60.5
ATR0564G159 Amborella trichopoda HOM05D000006 ORTHO05D004030 2.7e-65 253.1 205 61.0
BcaC04g23307 Brassica carinata HOM05D000006 ORTHO05D004030 2.7e-65 253.1 205 60.5
A09p08740 Brassica napus HOM05D000006 ORTHO05D004030 2.7e-65 253.1 205 60.5
C09p09880 Brassica napus HOM05D000006 ORTHO05D004030 2.7e-65 253.1 205 60.5
BolC9t53896H Brassica oleracea HOM05D000006 ORTHO05D004030 2.7e-65 253.1 205 60.5
BraA09t36523Z Brassica rapa HOM05D000006 ORTHO05D004030 2.7e-65 253.1 205 60.5
CBR_g17677 Chara braunii HOM05D000006 ORTHO05D004030 2.7e-65 253.1 205 60.0
FvH4_5g38850 Fragaria vesca HOM05D000006 ORTHO05D004030 2.7e-65 253.1 205 61.0
FAN04G0021 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.7e-65 253.1 205 61.0
FAN08G2703 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.7e-65 253.1 205 61.0
FAN13G0359 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.7e-65 253.1 205 61.0
FAN18G2681 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.7e-65 253.1 205 61.0
THA.LOC104819319 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 2.7e-65 253.1 205 60.0
Aqoxy5G01525 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 3.5e-65 252.7 205 61.0
MSTRG.24147 Avicennia marina HOM05D000006 ORTHO05D004030 4.6e-65 252.3 205 61.0
COL.COLO4_21821 Corchorus olitorius HOM05D000006 ORTHO05D004030 4.6e-65 252.3 205 60.5
MELO3C022788.2 Cucumis melo HOM05D000006 ORTHO05D004030 4.6e-65 252.3 205 60.5
CsaV3_5G023540 Cucumis sativus L. HOM05D000006 ORTHO05D004030 4.6e-65 252.3 205 60.5
Migut.N03322 Erythranthe guttata HOM05D000006 ORTHO05D004030 4.6e-65 252.3 205 61.0
Eucgr.F04379 Eucalyptus grandis HOM05D000006 ORTHO05D004030 4.6e-65 252.3 205 60.0
Lalb_Chr18g0049021 Lupinus albus HOM05D000006 ORTHO05D004030 4.6e-65 252.3 205 61.0
SalBow6G6076 Salvia bowleyana HOM05D000006 ORTHO05D004030 4.6e-65 252.3 205 61.0
Sc23g0000920 Simmondsia chinensis HOM05D000006 ORTHO05D004030 4.6e-65 252.3 205 60.5
AL8G42020 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.0
AT5G64610 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.0
arahy.Tifrunner.gnm1.ann1.6W1W5K Arachis hypogaea HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.5
arahy.Tifrunner.gnm1.ann1.B54JNT Arachis hypogaea HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.5
MSTRG.22428 Avicennia marina HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 61.0
BcaB04g19978 Brassica carinata HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.0
CANSAT56G0745 Cannabis sativa HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.5
Carub.0008s2540 Capsella rubella HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.0
CARHR278580 Cardamine hirsuta HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.0
Ciclev10001133m.g Citrus clementina HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.5
Thhalv10004220m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.0
Glyma.04G130300 Glycine max HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.5
Glyma.06G316400 Glycine max HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.5
MD08G1173300 Malus domestica HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 61.0
MD15G1358600 Malus domestica HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 61.0
Mapoly0014s0119 Marchantia polymorpha HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 61.0
Nitab4.5_0000051g0130 Nicotiana tabacum HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.0
Nitab4.5_0002496g0060 Nicotiana tabacum HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.0
Prupe.1G506200 Prunus persica HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 61.0
RcHm_v2.0_Chr7g0240841 Rosa chinensis HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 61.0
Sp2g27670 Schrenkiella parvula HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.0
Hund16820 Selenicereus undatus HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.0
Sc01g0001570 Simmondsia chinensis HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 61.0
Solyc11g013520.3 Solanum lycopersicum HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.0
Sopen11g008540 Solanum pennellii HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.0
THA.LOC104799527 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 60.0
unitig_21.g20189 Utricularia gibba HOM05D000006 ORTHO05D004030 6.0e-65 251.9 205 61.0
Cc04_g08910 Coffea canephora HOM05D000006 ORTHO05D004030 7.9e-65 251.5 205 60.5
Duzib093G0061 Durio zibethinus HOM05D000006 ORTHO05D004030 7.9e-65 251.5 205 60.5
Gohir.A05G231900 Gossypium hirsutum HOM05D000006 ORTHO05D004030 7.9e-65 251.5 205 60.5
Gohir.D05G234200 Gossypium hirsutum HOM05D000006 ORTHO05D004030 7.9e-65 251.5 205 60.5
Gohir.D06G041700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 7.9e-65 251.5 205 60.5
Gorai.009G242400 Gossypium raimondii HOM05D000006 ORTHO05D004030 7.9e-65 251.5 205 60.5
Gorai.010G046900 Gossypium raimondii HOM05D000006 ORTHO05D004030 7.9e-65 251.5 205 60.5
Nn1g05200 Nelumbo nucifera HOM05D000006 ORTHO05D004030 7.9e-65 251.5 205 60.5
PSO210G6583 Papaver somniferum HOM05D000006 ORTHO05D004030 7.9e-65 251.5 205 60.5
PSO447G0296 Papaver somniferum HOM05D000006 ORTHO05D004030 7.9e-65 251.5 205 60.5
QL05p058776 Quercus lobata HOM05D000006 ORTHO05D004030 7.9e-65 251.5 205 60.5
Thecc.08G116400 Theobroma cacao HOM05D000006 ORTHO05D004030 7.9e-65 251.5 205 60.5
GSVIVG01008945001 Vitis vinifera HOM05D000006 ORTHO05D004030 7.9e-65 251.5 205 60.5
Atru.chr13.1315 Acer truncatum HOM05D000006 ORTHO05D004030 1.0e-64 251.1 205 60.0
Atru.chr13.1359 Acer truncatum HOM05D000006 ORTHO05D004030 1.0e-64 251.1 205 60.0
CSS0012091 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D004030 1.0e-64 251.1 205 60.5
CiPaw.05G229200 Carya illinoinensis HOM05D000006 ORTHO05D004030 1.0e-64 251.1 205 61.0
Oeu001989.1 Olea europaea HOM05D000006 ORTHO05D004030 1.0e-64 251.1 205 60.0
EL10Ac1g00041 Beta vulgaris HOM05D000006 ORTHO05D004030 1.3e-64 250.8 205 60.0
BcaB08g37162 Brassica carinata HOM05D000006 ORTHO05D004030 1.3e-64 250.8 205 59.5
BcaB08g37191 Brassica carinata HOM05D000006 ORTHO05D004030 1.3e-64 250.8 205 59.5
A10p27700 Brassica napus HOM05D000006 ORTHO05D004030 1.3e-64 250.8 205 59.5
C09p67790 Brassica napus HOM05D000006 ORTHO05D004030 1.3e-64 250.8 205 59.5
BolC9t59541H Brassica oleracea HOM05D000006 ORTHO05D004030 1.3e-64 250.8 205 59.5
BraA10t44822Z Brassica rapa HOM05D000006 ORTHO05D004030 1.3e-64 250.8 205 59.5
Thhalv10013550m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 1.3e-64 250.8 205 59.5
Medtr3g007710 Medicago truncatula HOM05D000006 ORTHO05D004030 1.3e-64 250.8 205 60.0
Phvul.005G010700 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 1.3e-64 250.8 205 60.0
Phvul.005G011500 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 1.3e-64 250.8 205 60.0
Psat5g230080 Pisum sativum HOM05D000006 ORTHO05D004030 1.3e-64 250.8 205 60.0
Potri.002G089500 Populus trichocarpa HOM05D000006 ORTHO05D004030 1.3e-64 250.8 205 60.0
TPR.G12257 Trifolium pratense HOM05D000006 ORTHO05D004030 1.3e-64 250.8 205 60.0
Aa31LG1G17340 Aethionema arabicum HOM05D000006 ORTHO05D004030 1.8e-64 250.4 205 60.0
AL6G20140 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 1.8e-64 250.4 205 59.5
Dinv26721 Davidia involucrata HOM05D000006 ORTHO05D004030 1.8e-64 250.4 205 60.0
Pp3c4_18030 Physcomitrium patens HOM05D000006 ORTHO05D004030 1.8e-64 250.4 205 60.0
Sabra05G0129200 Salix brachista HOM05D000006 ORTHO05D004030 1.8e-64 250.4 205 59.5
TAR625G0616 Trochodendron aralioides HOM05D000006 ORTHO05D004030 1.8e-64 250.4 205 60.0
Zm00001eb328000 Zea mays HOM05D000006 ORTHO05D004030 1.8e-64 250.4 205 59.5
Actinidia03495 Actinidia chinensis HOM05D000006 ORTHO05D004030 2.3e-64 250.0 205 59.5
CARHR203660 Cardamine hirsuta HOM05D000006 ORTHO05D004030 2.3e-64 250.0 205 59.5
Gohir.A06G040700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 2.3e-64 250.0 205 60.0
Os07g0626600 Oryza sativa ssp. japonica HOM05D000006 ORTHO05D004030 2.3e-64 250.0 205 59.5
Sed0027470 Sechium edule HOM05D000006 ORTHO05D004030 2.3e-64 250.0 205 60.0
TAR381G0924 Trochodendron aralioides HOM05D000006 ORTHO05D004030 2.3e-64 250.0 205 60.0
Actinidia23042 Actinidia chinensis HOM05D000006 ORTHO05D004030 3.0e-64 249.6 206 59.2
Lj3g0019564 Lotus japonicus HOM05D000006 ORTHO05D004030 3.0e-64 249.6 205 59.5
Peaxi162Scf00360g00314 Petunia axillaris HOM05D000006 ORTHO05D004030 3.0e-64 249.6 205 59.0
Ca_14036_v3 Cicer arietinum L. HOM05D000006 ORTHO05D004030 3.9e-64 249.2 205 59.5
HanXRQChr02g0044231 Helianthus annuus HOM05D000006 ORTHO05D004030 3.9e-64 249.2 205 59.5
Sp6g33660 Schrenkiella parvula HOM05D000006 ORTHO05D004030 3.9e-64 249.2 205 59.0
DCAR_014281 Daucus carota HOM05D000006 ORTHO05D004030 5.1e-64 248.8 205 60.0
Potri.005G171700 Populus trichocarpa HOM05D000006 ORTHO05D004030 5.1e-64 248.8 205 59.0
Ah.05g172680 Amaranthus hybridus HOM05D000006 ORTHO05D004030 6.7e-64 248.4 205 59.5
AagrBONN_evm.TU.Sc2ySwM_344.1570 Anthoceros agrestis HOM05D000006 ORTHO05D004030 6.7e-64 248.4 206 59.7
VMungo1080G1349 Vigna mungo HOM05D000006 ORTHO05D004030 6.7e-64 248.4 205 59.5
ECA247G3040 Erigeron canadensis HOM05D000006 ORTHO05D000091 8.7e-64 248.1 205 59.5
Lsat_1_v5_gn_1_12240 Lactuca sativa HOM05D000006 ORTHO05D004030 8.7e-64 248.1 205 59.5
MCO09G855 Micromonas commoda HOM05D000006 ORTHO05D004030 8.7e-64 248.1 207 58.5
SalBow7G0198 Salvia bowleyana HOM05D000006 ORTHO05D004030 8.7e-64 248.1 205 60.0
SalBow7G3631 Salvia bowleyana HOM05D000006 ORTHO05D004030 8.7e-64 248.1 205 60.0
SMO351G0268 Selaginella moellendorffii HOM05D000006 ORTHO05D004030 8.7e-64 248.1 205 60.0
AT5G09740 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 1.1e-63 247.7 205 59.0
Lj4A550G32 Lonicera japonica HOM05D000006 ORTHO05D004030 1.1e-63 247.7 205 59.5
Lj4A578G72 Lonicera japonica HOM05D000006 ORTHO05D004030 1.1e-63 247.7 205 59.5
AUR62004690 Chenopodium quinoa HOM05D000006 ORTHO05D004030 4.3e-63 245.7 210 59.0
ClCG03G009080 Citrullus lanatus HOM05D000006 ORTHO05D004030 5.7e-63 245.4 215 58.1
Rhsim11G0065000 Rhododendron simsii HOM05D000006 ORTHO05D004030 1.4e-61 240.7 215 56.7
Sabra02G0070500 Salix brachista HOM05D000006 ORTHO05D004030 5.3e-61 238.8 217 56.2
Cre03.g143907 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 2.0e-60 236.9 206 56.3
Oeu039581.2 Olea europaea HOM05D000006 ORTHO05D004030 2.0e-60 236.9 226 54.0
MCO10G130 Micromonas commoda HOM05D000006 ORTHO05D004030 2.6e-60 236.5 208 55.8
Haze_26687 Corylus avellana HOM05D000006 ORTHO05D004030 4.5e-60 235.7 205 55.1
MCO10G273 Micromonas commoda HOM05D000006 ORTHO05D004030 2.2e-59 233.4 205 55.1
CAN.G222.83 Capsicum annuum HOM05D000006 ORTHO05D004030 1.1e-58 231.1 201 57.2
CAN.G255.14 Capsicum annuum HOM05D000006 ORTHO05D004030 3.2e-58 229.6 205 57.1
Aqoxy6G00495 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 4.2e-58 229.2 206 54.4
PRCOL_00001934 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 4.2e-58 229.2 205 55.6
PRCOL_00006094 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 9.3e-58 228.0 209 56.0
SGA_v2.0_scaffold25G11094 Striga asiatica HOM05D000006 ORTHO05D004030 1.0e-56 224.6 269 46.8
Haze_27167 Corylus avellana HOM05D000006 ORTHO05D004030 1.3e-56 224.2 206 52.9
Haze_26200 Corylus avellana HOM05D000006 ORTHO05D004030 1.8e-56 223.8 205 51.7
Cfa025466 Carpinus fangiana HOM05D000006 ORTHO05D004030 5.7e-55 218.8 212 50.5
vmacro12808 Vaccinium macrocarpon HOM05D000006 ORTHO05D004030 9.7e-55 218.0 263 46.4
Cpa.g.sc42.141 Carica papaya HOM05D000006 ORTHO05D004030 9.1e-53 211.5 173 61.8
Haze_26386 Corylus avellana HOM05D000006 ORTHO05D004030 7.7e-52 208.4 206 51.5
MBI04_g34117_MAGBIO Magnolia biondii HOM05D000006 ORTHO05D004030 7.7e-52 208.4 205 53.2
Lj7C307G3 Lonicera japonica HOM05D000006 ORTHO05D004030 1.3e-51 207.6 205 52.7
Duzib116G0798 Durio zibethinus HOM05D000006 ORTHO05D004030 1.7e-51 207.2 205 52.7
AUR62023606 Chenopodium quinoa HOM05D000006 ORTHO05D004030 2.2e-51 206.8 205 52.2
TAR628G0303 Trochodendron aralioides HOM05D000006 ORTHO05D004030 2.9e-51 206.5 182 57.1
Nn5g28927 Nelumbo nucifera HOM05D000006 ORTHO05D004030 3.2e-50 203.0 175 60.0
Manes.18G072700 Manihot esculenta HOM05D000006 ORTHO05D004030 4.2e-50 202.6 175 59.4
Cfa027305 Carpinus fangiana HOM05D000006 ORTHO05D004030 5.1e-48 195.7 205 49.3
CDE02G1825 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 8.2e-46 188.3 110 80.9
SEGI_24978 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 2.2e-43 180.3 86 100.0
Gorai.011G166000 Gossypium raimondii HOM05D000006 ORTHO05D004030 6.7e-40 168.7 102 78.4
SGA_v2.0_scaffold28G12032 Striga asiatica HOM05D000006 ORTHO05D004030 1.6e-36 157.5 169 50.3
CAN.G959.48 Capsicum annuum HOM05D000006 ORTHO05D004030 1.5e-34 151.0 152 52.0
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 8.0e-33 145.2 158 53.2
PSO675G4731 Papaver somniferum HOM05D000006 ORTHO05D004030 1.0e-32 144.8 204 40.2
PSO541G6025 Papaver somniferum HOM05D000006 ORTHO05D004030 1.4e-32 144.4 204 40.2
BcaC01g02690 Brassica carinata HOM05D000006 ORTHO05D004030 3.5e-28 129.8 187 42.2
PSO210G6350 Papaver somniferum HOM05D000006 ORTHO05D004030 1.6e-25 120.9 190 34.7
Cfa026876 Carpinus fangiana HOM05D000006 ORTHO05D004030 2.3e-24 117.1 181 35.9
FAN25G2177 Fragaria x ananassa HOM05D000006 ORTHO05D004030 4.1e-21 106.3 110 52.7
A06p31330 Brassica napus HOM05D000006 ORTHO05D004030 5.2e-16 89.4 111 46.8
arahy.Tifrunner.gnm1.ann1.10Y5RS Arachis hypogaea HOM05D000006 ORTHO05D004030 1.1e-13 81.6 103 47.6
Zm00001eb109790 Zea mays HOM05D000006 ORTHO05D004030 1.1e-13 81.6 59 54.2
arahy.Tifrunner.gnm1.ann1.B34789 Arachis hypogaea HOM05D000006 ORTHO05D004030 2.4e-13 80.5 54 72.2
arahy.Tifrunner.gnm1.ann1.KN38JA Arachis hypogaea HOM05D000006 ORTHO05D004030 2.4e-13 80.5 54 72.2
CAN.G523.61 Capsicum annuum HOM05D001058 ORTHO05D000911 9.2e-13 78.6 159 34.0
TAR376G0202 Trochodendron aralioides HOM05D000006 ORTHO05D004030 5.9e-12 75.9 59 52.5
SEGI_16294 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 3.0e-08 63.5 33 87.9
BraA06t26075Z Brassica rapa HOM05D000006 ORTHO05D004030 1.5e-07 61.2 46 60.9


User provided reference genes

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