Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 4.0e-116 421.4 208 100.0
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.7e-69 266.5 158 84.2
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.8e-69 265.8 152 85.5
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.8e-69 265.8 152 85.5
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.1e-68 263.8 152 84.9
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 2.4e-68 262.7 152 84.2
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 2.7e-67 259.2 152 84.9
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 4.5e-67 258.5 158 82.3
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 1.0e-66 257.3 157 82.8
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.0e-66 257.3 152 84.9
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 1.7e-66 256.5 156 83.3
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 2.3e-66 256.1 152 84.2
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 3.8e-66 255.4 149 85.2
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 3.8e-66 255.4 149 84.6
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 3.8e-66 255.4 155 82.6
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.8e-66 255.4 152 82.9
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 3.8e-66 255.4 159 80.5
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 3.8e-66 255.4 152 82.9
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 5.0e-66 255.0 167 77.8
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 5.0e-66 255.0 166 77.7
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 8.6e-66 254.2 159 79.9
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 1.9e-65 253.1 159 81.8
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.9e-65 253.1 154 81.2
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 1.9e-65 253.1 158 81.6
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 1.9e-65 253.1 152 82.2
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 2.5e-65 252.7 152 82.9
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 3.3e-65 252.3 152 82.2
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 3.3e-65 252.3 157 80.9
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 4.2e-65 251.9 158 81.0
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.2e-65 251.9 149 84.6
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.2e-65 251.9 149 84.6
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 4.2e-65 251.9 149 84.6
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 5.5e-65 251.5 149 83.9
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 5.5e-65 251.5 157 80.9
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 5.5e-65 251.5 149 84.6
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 5.5e-65 251.5 166 77.1
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.5e-65 251.5 166 77.1
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.5e-65 251.5 166 77.1
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.5e-65 251.5 166 77.1
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.5e-65 251.5 166 77.1
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 5.5e-65 251.5 149 84.6
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 5.5e-65 251.5 152 83.6
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 5.5e-65 251.5 152 83.6
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 5.5e-65 251.5 158 79.7
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 5.5e-65 251.5 149 82.6
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 7.2e-65 251.1 149 82.6
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 7.2e-65 251.1 152 81.6
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 7.2e-65 251.1 157 80.3
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 7.2e-65 251.1 152 82.2
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 7.2e-65 251.1 158 79.7
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 9.5e-65 250.8 166 76.5
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 9.5e-65 250.8 157 80.3
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 9.5e-65 250.8 166 77.1
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 9.5e-65 250.8 158 80.4
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 9.5e-65 250.8 152 83.6
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 9.5e-65 250.8 149 82.6
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 9.5e-65 250.8 151 82.8
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 1.2e-64 250.4 157 80.3
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.2e-64 250.4 152 82.2
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 1.2e-64 250.4 149 83.9
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 1.6e-64 250.0 157 80.3
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 1.6e-64 250.0 157 80.3
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.6e-64 250.0 157 79.6
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 1.6e-64 250.0 158 79.1
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 1.6e-64 250.0 152 81.6
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 1.6e-64 250.0 152 82.2
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 1.6e-64 250.0 158 79.1
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 2.1e-64 249.6 157 80.9
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.1e-64 249.6 149 81.9
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 2.1e-64 249.6 152 82.9
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 2.1e-64 249.6 152 82.9
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 2.1e-64 249.6 167 79.6
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 2.8e-64 249.2 158 79.1
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 2.8e-64 249.2 156 81.4
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 2.8e-64 249.2 153 83.0
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 3.6e-64 248.8 156 79.5
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 4.7e-64 248.4 152 80.3
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 4.7e-64 248.4 158 79.1
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 6.1e-64 248.1 166 77.7
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 6.1e-64 248.1 154 80.5
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 8.0e-64 247.7 156 80.1
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 8.0e-64 247.7 167 77.8
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.4e-63 246.9 156 77.6
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 1.4e-63 246.9 152 80.9
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 1.4e-63 246.9 149 80.5
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 1.8e-63 246.5 148 85.8
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 2.3e-63 246.1 152 80.3
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 2.3e-63 246.1 149 80.5
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 3.0e-63 245.7 156 76.9
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 3.0e-63 245.7 156 76.9
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 3.0e-63 245.7 152 80.9
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 3.0e-63 245.7 159 75.5
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 4.0e-63 245.4 156 78.2
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 5.2e-63 245.0 144 84.7
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 5.2e-63 245.0 156 76.3
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 5.2e-63 245.0 156 76.3
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 5.2e-63 245.0 156 76.3
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 5.2e-63 245.0 159 75.5
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 5.2e-63 245.0 157 78.3
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 2.0e-62 243.0 156 75.6
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 2.0e-62 243.0 159 77.4
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.6e-62 242.7 154 76.6
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.6e-62 242.7 156 75.6
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 2.6e-62 242.7 156 75.6
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 5.7e-62 241.5 152 79.6
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 5.7e-62 241.5 149 79.9
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 2.0e-59 233.0 134 84.3
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.9e-57 226.5 140 81.4
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 2.5e-57 226.1 140 80.7
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 1.1e-52 210.7 134 74.6
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.9e-52 209.9 117 88.0
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.9e-52 209.9 117 88.0
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 3.2e-52 209.1 131 78.6
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 4.1e-52 208.8 117 87.2
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 1.7e-50 203.4 143 72.7
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 7.5e-46 188.0 156 64.7
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 2.9e-45 186.0 105 84.8
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 9.2e-44 181.0 120 75.0
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.3e-42 177.2 138 64.5
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 3.0e-42 176.0 117 75.2
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 5.1e-42 175.3 113 77.9
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 1.9e-36 156.8 83 89.2
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 3.0e-34 149.4 151 55.6
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 9.5e-33 144.4 95 76.8
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 2.9e-29 132.9 91 74.7
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 7.1e-28 128.3 75 82.7
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 9.2e-28 127.9 75 85.3
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 1.7e-26 123.6 134 53.7
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 1.2e-24 117.5 73 82.2
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 2.6e-22 109.8 50 96.0
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 2.9e-21 106.3 48 97.9
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 6.4e-21 105.1 90 62.2
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-20 103.2 48 95.8
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-15 87.8 72 59.7
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.1e-15 87.8 48 87.5
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 6.9e-15 85.1 72 56.9
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 9.0e-15 84.7 62 71.0
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 3.8e-13 79.3 55 70.9
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 3.2e-12 76.3 49 73.5
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 9.6e-09 64.7 58 58.6
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 9.6e-09 64.7 58 58.6


User provided reference genes

Program Settings