Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 2.1e-134 482.3 230 100.0
Sabra08G0153200 Salix brachista HOM05D006708 ORTHO05D008321 2.8e-41 172.9 122 67.2
Ciclev10005313m.g Citrus clementina HOM05D006708 ORTHO05D008321 2.3e-40 169.9 121 63.6
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 2.3e-40 169.9 121 63.6
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 2.3e-40 169.9 122 64.8
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 2.3e-40 169.9 121 63.6
MD13G1140300 Malus domestica HOM05D006708 ORTHO05D008321 5.2e-40 168.7 121 62.0
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 1.2e-39 167.5 121 62.8
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 1.2e-39 167.5 121 62.8
Prupe.1G104700 Prunus persica HOM05D006708 ORTHO05D008321 2.6e-39 166.4 121 62.0
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 3.4e-39 166.0 121 63.6
Atru.chr4.3165 Acer truncatum HOM05D006708 ORTHO05D008321 7.5e-39 164.9 121 61.2
Thecc.04G313500 Theobroma cacao HOM05D006708 ORTHO05D008321 1.7e-38 163.7 121 62.0
Duzib151G0010 Durio zibethinus HOM05D006708 ORTHO05D008321 2.2e-38 163.3 121 62.0
Manes.03G212000 Manihot esculenta HOM05D006708 ORTHO05D008321 2.2e-38 163.3 121 61.2
Cfa014219 Carpinus fangiana HOM05D006708 ORTHO05D008321 2.9e-38 162.9 122 62.3
Gohir.A02G058800 Gossypium hirsutum HOM05D006708 ORTHO05D008321 2.9e-38 162.9 121 62.0
Gorai.005G073000 Gossypium raimondii HOM05D006708 ORTHO05D008321 2.9e-38 162.9 121 62.0
Cpa.g.sc146.18 Carica papaya HOM05D006708 ORTHO05D008321 3.7e-38 162.5 121 62.0
Haze_12609 Corylus avellana HOM05D006708 ORTHO05D008321 3.7e-38 162.5 122 63.9
Haze_12620 Corylus avellana HOM05D006708 ORTHO05D008321 3.7e-38 162.5 122 63.9
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 4.9e-38 162.2 120 61.7
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 4.9e-38 162.2 122 63.9
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 6.4e-38 161.8 121 61.2
Sed0006346 Sechium edule HOM05D006708 ORTHO05D008321 6.4e-38 161.8 121 60.3
CSS0037344 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 8.3e-38 161.4 121 60.3
TAR365G0272 Trochodendron aralioides HOM05D006708 ORTHO05D008321 1.1e-37 161.0 121 61.2
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 1.4e-37 160.6 126 61.1
CSS0031150 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 2.4e-37 159.8 121 60.3
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 2.4e-37 159.8 121 62.0
CiPaw.01G128700 Carya illinoinensis HOM05D006708 ORTHO05D008321 2.4e-37 159.8 121 59.5
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 2.4e-37 159.8 121 59.5
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 3.2e-37 159.5 121 60.3
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 5.4e-37 158.7 122 61.5
MELO3C021228.2 Cucumis melo HOM05D006708 ORTHO05D008321 7.1e-37 158.3 121 59.5
Glyma.13G119200 Glycine max HOM05D006708 ORTHO05D008321 7.1e-37 158.3 121 61.2
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 9.2e-37 157.9 120 60.0
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 9.2e-37 157.9 120 60.0
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 1.2e-36 157.5 122 62.3
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 1.2e-36 157.5 120 60.0
Gohir.D02G064500 Gossypium hirsutum HOM05D006708 ORTHO05D008321 2.1e-36 156.8 121 60.3
Eucgr.B03960 Eucalyptus grandis HOM05D006708 ORTHO05D008321 3.5e-36 156.0 120 58.3
Aqoxy2G02504 Aquilegia oxysepala HOM05D006708 ORTHO05D008321 4.6e-36 155.6 121 56.2
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 4.6e-36 155.6 121 59.5
CsaV3_6G000260 Cucumis sativus L. HOM05D006708 ORTHO05D008321 4.6e-36 155.6 121 58.7
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 6.0e-36 155.2 121 59.5
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 7.8e-36 154.8 121 60.3
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 7.8e-36 154.8 121 60.3
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 7.8e-36 154.8 120 60.8
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 1.0e-35 154.5 122 61.5
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 1.0e-35 154.5 121 59.5
GSVIVG01017693001 Vitis vinifera HOM05D006708 ORTHO05D008321 1.0e-35 154.5 121 59.5
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 2.3e-35 153.3 120 58.3
Sc19g0002530 Simmondsia chinensis HOM05D006708 ORTHO05D008321 5.1e-35 152.1 120 55.8
ATR0796G062 Amborella trichopoda HOM05D006708 ORTHO05D008321 6.6e-35 151.8 121 57.0
AT3G06950 Arabidopsis thaliana HOM05D006708 ORTHO05D008321 8.6e-35 151.4 121 57.9
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 8.6e-35 151.4 121 57.9
MSTRG.24854 Avicennia marina HOM05D006708 ORTHO05D008321 1.1e-34 151.0 121 58.7
AL3G18120 Arabidopsis lyrata HOM05D006708 ORTHO05D008321 1.5e-34 150.6 122 59.8
DCAR_023411 Daucus carota HOM05D006708 ORTHO05D008321 1.5e-34 150.6 121 56.2
Thhalv10022298m.g Eutrema salsugineum HOM05D006708 ORTHO05D008321 1.5e-34 150.6 121 57.0
THA.LOC104802685 Tarenaya hassleriana HOM05D006708 ORTHO05D008321 1.5e-34 150.6 120 58.3
SGA_v2.0_scaffold109G31012 Striga asiatica HOM05D006708 ORTHO05D008321 1.9e-34 150.2 122 59.8
CARHR081550 Cardamine hirsuta HOM05D006708 ORTHO05D008321 2.5e-34 149.8 121 55.4
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 3.3e-34 149.4 122 59.0
Carub.0003s0647 Capsella rubella HOM05D006708 ORTHO05D008321 4.3e-34 149.1 121 56.2
Cc03_g00080 Coffea canephora HOM05D006708 ORTHO05D008321 7.3e-34 148.3 121 58.7
Aa31LG5G17510 Aethionema arabicum HOM05D006708 ORTHO05D008321 9.5e-34 147.9 121 57.0
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 9.5e-34 147.9 120 56.7
PSO761G0290 Papaver somniferum HOM05D006708 ORTHO05D008321 9.5e-34 147.9 121 56.2
PGR031G3511 Punica granatum HOM05D006708 ORTHO05D008321 1.2e-33 147.5 119 56.3
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 1.6e-33 147.1 120 57.5
Sp3g05900 Schrenkiella parvula HOM05D006708 ORTHO05D008321 1.6e-33 147.1 121 57.0
Oeu022711.1 Olea europaea HOM05D006708 ORTHO05D008321 2.1e-33 146.7 121 56.2
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 2.8e-33 146.4 120 54.2
PSO210G5816 Papaver somniferum HOM05D006708 ORTHO05D008321 2.8e-33 146.4 121 56.2
BraA03t12678Z Brassica rapa HOM05D006708 ORTHO05D008321 3.6e-33 146.0 121 56.2
Psat4g021160 Pisum sativum HOM05D006708 ORTHO05D008321 3.6e-33 146.0 121 55.4
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 3.6e-33 146.0 121 55.4
C03p42560 Brassica napus HOM05D006708 ORTHO05D008321 4.7e-33 145.6 121 56.2
BolC3t16526H Brassica oleracea HOM05D006708 ORTHO05D008321 4.7e-33 145.6 121 56.2
ClCG06G004170 Citrullus lanatus HOM05D006708 ORTHO05D008321 6.2e-33 145.2 97 68.0
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 8.1e-33 144.8 121 54.5
Peaxi162Scf00164g00315 Petunia axillaris HOM05D006708 ORTHO05D008321 1.8e-32 143.7 120 55.8
A03p34980 Brassica napus HOM05D006708 ORTHO05D008321 2.4e-32 143.3 121 54.5
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 3.1e-32 142.9 120 55.8
MD16G1135500 Malus domestica HOM05D006708 ORTHO05D008321 1.5e-31 140.6 121 53.7
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 1.5e-31 140.6 118 55.1
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 2.0e-31 140.2 120 52.5
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 5.8e-31 138.7 120 53.3
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 5.8e-31 138.7 120 54.2
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 7.6e-31 138.3 120 54.2
CSS0015576 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 9.9e-31 137.9 128 53.1
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 9.9e-31 137.9 121 54.5
unitig_1.g29359 Utricularia gibba HOM05D006708 ORTHO05D008321 9.9e-31 137.9 121 53.7
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 3.8e-30 136.0 120 52.5
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 4.9e-30 135.6 120 52.5
EL10Ac3g06239 Beta vulgaris HOM05D006708 ORTHO05D008321 6.4e-30 135.2 120 51.7
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 6.4e-30 135.2 120 53.3
unitig_747.g22054 Utricularia gibba HOM05D006708 ORTHO05D008321 6.4e-30 135.2 145 46.9
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 1.6e-28 130.6 118 53.4
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 1.6e-25 120.6 118 50.8
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 6.2e-25 118.6 127 46.5
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 2.3e-19 100.1 122 41.8
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 3.3e-18 96.3 126 42.1
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 2.6e-15 86.7 112 42.0
Rhsim05G0000200 Rhododendron simsii HOM05D006708 ORTHO05D008321 4.6e-12 75.9 61 54.1
CSS0021077 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 3.9e-11 72.8 49 63.3
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 1.1e-08 64.7 74 41.9
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 4.0e-08 62.8 128 29.7
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 4.0e-08 62.8 98 32.7
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 5.3e-08 62.4 72 43.1
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 5.3e-08 62.4 74 41.9
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 9.0e-08 61.6 74 40.5
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 1.2e-07 61.2 72 38.9
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 1.5e-07 60.8 72 40.3
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 1.5e-07 60.8 72 40.3
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 1.5e-07 60.8 118 33.9
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 1.5e-07 60.8 98 33.7
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 1.5e-07 60.8 73 41.1
SMO174G0185 Selaginella moellendorffii HOM05D005655 ORTHO05D007386 1.5e-07 60.8 112 33.0
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 2.0e-07 60.5 74 41.9
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 2.0e-07 60.5 98 33.7
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 2.6e-07 60.1 74 40.5
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 2.6e-07 60.1 96 32.3
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 3.4e-07 59.7 74 37.8
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 4.5e-07 59.3 140 28.6
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 4.5e-07 59.3 72 38.9
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 4.5e-07 59.3 72 38.9
Aqoxy5G02015 Aquilegia oxysepala HOM05D005655 ORTHO05D007386 5.8e-07 58.9 98 37.8
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 5.8e-07 58.9 74 40.5
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 5.8e-07 58.9 96 30.2
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 5.8e-07 58.9 74 37.8
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 5.8e-07 58.9 74 39.2
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 5.8e-07 58.9 74 39.2
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 5.8e-07 58.9 74 39.2
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 5.8e-07 58.9 109 30.3
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 5.8e-07 58.9 74 40.5
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 5.8e-07 58.9 72 38.9
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 7.6e-07 58.5 74 39.2
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 7.6e-07 58.5 98 33.7
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 1.0e-06 58.2 98 31.6
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 1.0e-06 58.2 74 41.9
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 1.3e-06 57.8 74 40.5
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 1.7e-06 57.4 74 39.2
Pp3c9_3740 Physcomitrium patens HOM05D005655 ORTHO05D007386 1.7e-06 57.4 106 34.0
Potri.002G061650 Populus trichocarpa HOM05D005655 ORTHO05D007386 1.7e-06 57.4 99 35.4
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 2.2e-06 57.0 72 37.5
Lsat_1_v5_gn_4_14320 Lactuca sativa HOM05D006708 ORTHO05D008321 2.2e-06 57.0 53 45.3
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 2.2e-06 57.0 72 36.1
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 2.9e-06 56.6 98 30.6
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 2.9e-06 56.6 72 36.1
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.9e-06 56.6 74 39.2
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.9e-06 56.6 74 37.8
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 2.9e-06 56.6 74 39.2
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 3.8e-06 56.2 74 37.8
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 3.8e-06 56.2 98 33.7
AUR62022311 Chenopodium quinoa HOM05D005655 ORTHO05D007386 4.9e-06 55.8 100 34.0
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 4.9e-06 55.8 74 37.8
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 4.9e-06 55.8 96 32.3
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 4.9e-06 55.8 72 36.1
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 4.9e-06 55.8 72 36.1
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 4.9e-06 55.8 72 36.1
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 6.4e-06 55.5 74 36.5
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 6.4e-06 55.5 74 39.2
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 6.4e-06 55.5 98 33.7
Dinv41018 Davidia involucrata HOM05D005655 ORTHO05D007386 6.4e-06 55.5 99 36.4
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 6.4e-06 55.5 74 37.8
Nn5g28881 Nelumbo nucifera HOM05D005655 ORTHO05D007386 6.4e-06 55.5 99 33.3
Sabra02G0049900 Salix brachista HOM05D005655 ORTHO05D007386 6.4e-06 55.5 99 34.3
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 8.4e-06 55.1 98 30.6
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 8.4e-06 55.1 98 30.6
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 8.4e-06 55.1 74 39.2
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 8.4e-06 55.1 74 36.5
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 8.4e-06 55.1 74 36.5
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 8.4e-06 55.1 72 36.1
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 8.4e-06 55.1 75 36.0
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 8.4e-06 55.1 72 37.5
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 8.4e-06 55.1 74 39.2
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 8.4e-06 55.1 98 33.7
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 8.4e-06 55.1 72 36.1


User provided reference genes

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