Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31932 Sequoiadendron giganteum HOM05D003441 ORTHO05D004516 1.9e-78 295.8 152 100.0
Haze_26458 Corylus avellana HOM05D003441 ORTHO05D004516 1.0e-23 114.0 114 57.0
FAN13G0786 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.0e-23 114.0 124 53.2
MCO01G486 Micromonas commoda HOM05D003441 ORTHO05D004516 1.3e-23 113.6 121 52.9
RcHm_v2.0_Chr1g0341861 Rosa chinensis HOM05D003441 ORTHO05D004516 1.3e-23 113.6 118 55.9
CARHR212960 Cardamine hirsuta HOM05D003441 ORTHO05D004516 1.7e-23 113.2 124 53.2
Solyc08g081340.4 Solanum lycopersicum HOM05D003441 ORTHO05D004516 2.2e-23 112.8 122 54.1
Sopen08g029660 Solanum pennellii HOM05D003441 ORTHO05D004516 2.2e-23 112.8 122 54.1
TAR636G0201 Trochodendron aralioides HOM05D003441 ORTHO05D004516 2.2e-23 112.8 123 52.8
ECA246G1863 Erigeron canadensis HOM05D003441 ORTHO05D004516 2.9e-23 112.5 124 51.6
MBI04_g41820_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 2.9e-23 112.5 125 53.6
SMO115G0252 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 2.9e-23 112.5 121 52.9
PGSC0003DMG400012332 Solanum tuberosum HOM05D003441 ORTHO05D004516 2.9e-23 112.5 122 54.1
THA.LOC104817891 Tarenaya hassleriana HOM05D003441 ORTHO05D004516 2.9e-23 112.5 124 53.2
AagrBONN_evm.TU.Sc2ySwM_368.2338 Anthoceros agrestis HOM05D003441 ORTHO05D004516 3.8e-23 112.1 119 54.6
Aqoxy5G02024 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 3.8e-23 112.1 119 55.5
A07p20760 Brassica napus HOM05D003441 ORTHO05D004516 3.8e-23 112.1 124 52.4
BraA07t29768Z Brassica rapa HOM05D003441 ORTHO05D004516 3.8e-23 112.1 124 52.4
FvH4_5g02840 Fragaria vesca HOM05D003441 ORTHO05D004516 3.8e-23 112.1 124 52.4
FAN04G2979 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.8e-23 112.1 124 52.4
FAN08G0848 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.8e-23 112.1 124 52.4
Zm00001eb156220 Zea mays HOM05D003441 ORTHO05D004516 5.0e-23 111.7 115 55.7
AL7G48050 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 6.5e-23 111.3 123 52.0
BcaB02g07896 Brassica carinata HOM05D003441 ORTHO05D004516 6.5e-23 111.3 124 52.4
BcaB06g27616 Brassica carinata HOM05D003441 ORTHO05D004516 6.5e-23 111.3 124 52.4
BcaC02g08964 Brassica carinata HOM05D003441 ORTHO05D004516 6.5e-23 111.3 124 52.4
A04p14500 Brassica napus HOM05D003441 ORTHO05D004516 6.5e-23 111.3 124 52.4
C04p48400 Brassica napus HOM05D003441 ORTHO05D004516 6.5e-23 111.3 124 52.4
BolC4t26434H Brassica oleracea HOM05D003441 ORTHO05D004516 6.5e-23 111.3 124 52.4
BraA04t17095Z Brassica rapa HOM05D003441 ORTHO05D004516 6.5e-23 111.3 124 52.4
Carub.0007s3411 Capsella rubella HOM05D003441 ORTHO05D004516 6.5e-23 111.3 123 52.0
Dinv37619 Davidia involucrata HOM05D003441 ORTHO05D004516 6.5e-23 111.3 124 52.4
Eucgr.E00638 Eucalyptus grandis HOM05D003441 ORTHO05D004516 6.5e-23 111.3 121 52.9
TWI15G1203 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 6.5e-23 111.3 124 52.4
Carub.0007s3412 Capsella rubella HOM05D003441 ORTHO05D004516 8.5e-23 110.9 123 52.0
Cfa023957 Carpinus fangiana HOM05D003441 ORTHO05D004516 8.5e-23 110.9 122 54.9
Migut.E01191 Erythranthe guttata HOM05D003441 ORTHO05D004516 8.5e-23 110.9 122 54.1
Glyma.05G209700 Glycine max HOM05D003441 ORTHO05D004516 8.5e-23 110.9 124 52.4
Glyma.08G016400 Glycine max HOM05D003441 ORTHO05D004516 8.5e-23 110.9 124 52.4
Medtr8g098675 Medicago truncatula HOM05D003441 ORTHO05D004516 8.5e-23 110.9 124 53.2
Nitab4.5_0001220g0100 Nicotiana tabacum HOM05D003441 ORTHO05D004516 8.5e-23 110.9 123 52.0
Nitab4.5_0001522g0040 Nicotiana tabacum HOM05D003441 ORTHO05D004516 8.5e-23 110.9 123 52.0
PSO478G5020 Papaver somniferum HOM05D003441 ORTHO05D004516 8.5e-23 110.9 122 53.3
RcHm_v2.0_Chr7g0197061 Rosa chinensis HOM05D003441 ORTHO05D004516 8.5e-23 110.9 124 52.4
TPR.G12826 Trifolium pratense HOM05D003441 ORTHO05D004516 8.5e-23 110.9 124 53.2
Aa31LG5G13590 Aethionema arabicum HOM05D003441 ORTHO05D004516 1.1e-22 110.5 123 52.0
AL7G48070 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 1.1e-22 110.5 123 52.0
AT5G41360 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 1.1e-22 110.5 123 52.0
AT5G41370 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 1.1e-22 110.5 114 54.4
Ciclev10019088m.g Citrus clementina HOM05D003441 ORTHO05D004516 1.1e-22 110.5 123 52.0
Lj8A218G25 Lonicera japonica HOM05D003441 ORTHO05D004516 1.1e-22 110.5 122 54.1
PSO017G3334 Papaver somniferum HOM05D003441 ORTHO05D004516 1.1e-22 110.5 122 53.3
PSO421G0274 Papaver somniferum HOM05D003441 ORTHO05D004516 1.1e-22 110.5 122 53.3
PRCOL_00001151 Prasinoderma coloniale HOM05D003441 ORTHO05D004516 1.1e-22 110.5 122 50.8
TWI15G1061 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 1.1e-22 110.5 124 52.4
GSVIVG01019392001 Vitis vinifera HOM05D003441 ORTHO05D004516 1.1e-22 110.5 124 52.4
Atru.chr9.2153 Acer truncatum HOM05D003441 ORTHO05D004516 1.5e-22 110.2 123 52.0
Actinidia28364 Actinidia chinensis HOM05D003441 ORTHO05D004516 1.5e-22 110.2 124 52.4
CAN.G532.8 Capsicum annuum HOM05D003441 ORTHO05D004516 1.5e-22 110.2 123 52.0
Thhalv10027651m.g Eutrema salsugineum HOM05D003441 ORTHO05D004516 1.5e-22 110.2 123 51.2
Psat7g031680 Pisum sativum HOM05D003441 ORTHO05D004516 1.5e-22 110.2 124 52.4
SalBow1G4213 Salvia bowleyana HOM05D003441 ORTHO05D004516 1.5e-22 110.2 119 54.6
TWI81G0502 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 1.5e-22 110.2 121 52.9
Ca_10937_v3 Cicer arietinum L. HOM05D003441 ORTHO05D004516 1.9e-22 109.8 124 52.4
COL.COLO4_34498 Corchorus olitorius HOM05D003441 ORTHO05D004516 1.9e-22 109.8 124 51.6
HanXRQChr17g0533461 Helianthus annuus HOM05D003441 ORTHO05D004516 1.9e-22 109.8 125 52.0
Lj4g0015025 Lotus japonicus HOM05D003441 ORTHO05D004516 1.9e-22 109.8 124 52.4
Lalb_Chr05g0224631 Lupinus albus HOM05D003441 ORTHO05D004516 1.9e-22 109.8 124 52.4
Lalb_Chr16g0390181 Lupinus albus HOM05D003441 ORTHO05D004516 1.9e-22 109.8 124 52.4
PGR042G0359 Punica granatum HOM05D003441 ORTHO05D004516 1.9e-22 109.8 121 52.9
Rhsim02G0234100 Rhododendron simsii HOM05D003441 ORTHO05D004516 1.9e-22 109.8 115 54.8
Sp7g00580 Schrenkiella parvula HOM05D003441 ORTHO05D004516 1.9e-22 109.8 124 52.4
SpUn0010_0060 Schrenkiella parvula HOM05D003441 ORTHO05D004516 1.9e-22 109.8 124 52.4
Sed0019074 Sechium edule HOM05D003441 ORTHO05D004516 1.9e-22 109.8 122 53.3
Aqoxy1G00680 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 2.5e-22 109.4 124 51.6
arahy.Tifrunner.gnm1.ann1.5RI6ER Arachis hypogaea HOM05D003441 ORTHO05D004516 2.5e-22 109.4 124 52.4
arahy.Tifrunner.gnm1.ann1.75Q964 Arachis hypogaea HOM05D003441 ORTHO05D004516 2.5e-22 109.4 124 52.4
AUR62010445 Chenopodium quinoa HOM05D003441 ORTHO05D004516 2.5e-22 109.4 123 52.0
AUR62030470 Chenopodium quinoa HOM05D003441 ORTHO05D004516 2.5e-22 109.4 123 52.0
Cc08_g15010 Coffea canephora HOM05D003441 ORTHO05D004516 2.5e-22 109.4 124 52.4
MELO3C005694.2 Cucumis melo HOM05D003441 ORTHO05D004516 2.5e-22 109.4 122 53.3
CsaV3_5G002620 Cucumis sativus L. HOM05D003441 ORTHO05D004516 2.5e-22 109.4 122 53.3
Lj2C182G1 Lonicera japonica HOM05D003441 ORTHO05D004516 2.5e-22 109.4 124 52.4
RcHm_v2.0_Chr7g0203931 Rosa chinensis HOM05D003441 ORTHO05D004516 2.5e-22 109.4 87 65.5
SMO347G0324 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 2.5e-22 109.4 112 53.6
BcaC08g44524 Brassica carinata HOM05D003441 ORTHO05D004516 3.2e-22 109.0 124 51.6
FAN06G0185 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.2e-22 109.0 123 51.2
Peaxi162Scf00074g02032 Petunia axillaris HOM05D003441 ORTHO05D004516 3.2e-22 109.0 123 51.2
Phvul.002G291500 Phaseolus vulgaris HOM05D003441 ORTHO05D004516 3.2e-22 109.0 124 52.4
SGA_v2.0_scaffold144G35916 Striga asiatica HOM05D003441 ORTHO05D004516 3.2e-22 109.0 122 54.1
HPP92_021979 Vanilla planifolia HOM05D003441 ORTHO05D004516 3.2e-22 109.0 124 51.6
VMungo0251G2080 Vigna mungo HOM05D003441 ORTHO05D004516 3.2e-22 109.0 124 52.4
CANSAT25G0732 Cannabis sativa HOM05D003441 ORTHO05D004516 4.2e-22 108.6 124 51.6
CiPaw.12G091100 Carya illinoinensis HOM05D003441 ORTHO05D004516 4.2e-22 108.6 124 51.6
CDE12G0607 Ceratophyllum demersum HOM05D003441 ORTHO05D004516 4.2e-22 108.6 124 51.6
CBR_g34305 Chara braunii HOM05D003441 ORTHO05D004516 4.2e-22 108.6 143 48.3
Nitab4.5_0004008g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 4.2e-22 108.6 116 51.7
Cpa.g.sc180.13 Carica papaya HOM05D003441 ORTHO05D004516 5.5e-22 108.2 124 50.8
DCAR_005566 Daucus carota HOM05D003441 ORTHO05D004516 5.5e-22 108.2 125 52.0
ECA246G2088 Erigeron canadensis HOM05D003441 ORTHO05D004516 5.5e-22 108.2 124 51.6
Lsat_1_v5_gn_3_6121 Lactuca sativa HOM05D003441 ORTHO05D004516 5.5e-22 108.2 125 51.2
Manes.02G021700 Manihot esculenta HOM05D003441 ORTHO05D004516 5.5e-22 108.2 122 52.5
Pp3c6_13890 Physcomitrium patens HOM05D003441 ORTHO05D004516 5.5e-22 108.2 119 53.8
Sabra01G0076300 Salix brachista HOM05D003441 ORTHO05D004516 5.5e-22 108.2 124 51.6
BolC6t37164H Brassica oleracea HOM05D003441 ORTHO05D004516 7.2e-22 107.8 124 51.6
CSS0029160 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 7.2e-22 107.8 124 51.6
CSS0043381 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 7.2e-22 107.8 124 51.6
FvH4_7g08220 Fragaria vesca HOM05D003441 ORTHO05D004516 7.2e-22 107.8 114 53.5
Gohir.D03G149600 Gossypium hirsutum HOM05D003441 ORTHO05D004516 7.2e-22 107.8 123 51.2
HanXRQChr06g0165951 Helianthus annuus HOM05D003441 ORTHO05D004516 7.2e-22 107.8 121 52.1
MSTRG.11971 Avicennia marina HOM05D003441 ORTHO05D004516 9.5e-22 107.5 121 52.1
C06p19750 Brassica napus HOM05D003441 ORTHO05D004516 9.5e-22 107.5 124 50.8
FAN08G2634 Fragaria x ananassa HOM05D003441 ORTHO05D004516 9.5e-22 107.5 92 64.1
Gorai.003G156900 Gossypium raimondii HOM05D003441 ORTHO05D004516 9.5e-22 107.5 123 51.2
Thecc.03G282800 Theobroma cacao HOM05D003441 ORTHO05D004516 9.5e-22 107.5 123 51.2
Duzib084G0223 Durio zibethinus HOM05D003441 ORTHO05D004516 1.2e-21 107.1 123 51.2
Duzib205G0291 Durio zibethinus HOM05D003441 ORTHO05D004516 1.2e-21 107.1 123 51.2
Gohir.A03G019400 Gossypium hirsutum HOM05D003441 ORTHO05D004516 1.2e-21 107.1 114 53.5
Mapoly0037s0100 Marchantia polymorpha HOM05D003441 ORTHO05D004516 1.2e-21 107.1 119 52.9
Gorai.007G023800 Gossypium raimondii HOM05D003441 ORTHO05D004516 1.6e-21 106.7 123 51.2
Potri.001G101300 Populus trichocarpa HOM05D003441 ORTHO05D004516 1.6e-21 106.7 124 50.8
Prupe.5G104000 Prunus persica HOM05D003441 ORTHO05D004516 2.1e-21 106.3 121 52.1
PGSC0003DMG400026783 Solanum tuberosum HOM05D003441 ORTHO05D004516 2.1e-21 106.3 145 45.5
Cfa012202 Carpinus fangiana HOM05D003441 ORTHO05D004516 2.8e-21 105.9 124 50.8
MD06G1087900 Malus domestica HOM05D003441 ORTHO05D004516 2.8e-21 105.9 124 50.8
QL12p032410 Quercus lobata HOM05D003441 ORTHO05D004516 2.8e-21 105.9 124 50.8
FAN04G2533 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.6e-21 105.5 92 63.0
Hund10975 Selenicereus undatus HOM05D003441 ORTHO05D004516 3.6e-21 105.5 123 50.4
FvH4_5g19420 Fragaria vesca HOM05D003441 ORTHO05D004516 4.7e-21 105.1 123 52.8
Gohir.D11G022366 Gossypium hirsutum HOM05D003441 ORTHO05D004516 4.7e-21 105.1 123 50.4
FAN13G0171 Fragaria x ananassa HOM05D003441 ORTHO05D004516 6.1e-21 104.8 92 62.0
Gohir.A11G022800 Gossypium hirsutum HOM05D003441 ORTHO05D004516 6.1e-21 104.8 123 50.4
FvH4_7g07850 Fragaria vesca HOM05D003441 ORTHO05D004516 8.0e-21 104.4 135 48.1
Nitab4.5_0002290g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 8.0e-21 104.4 142 45.8
ATR0661G194 Amborella trichopoda HOM05D003441 ORTHO05D004516 1.0e-20 104.0 124 50.8
Cre06.g297016 Chlamydomonas reinhardtii HOM05D003441 ORTHO05D004516 1.0e-20 104.0 121 49.6
FAN18G4545 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.4e-20 103.6 87 64.4
Nitab4.5_0004114g0020 Nicotiana tabacum HOM05D003441 ORTHO05D004516 2.3e-20 102.8 133 48.1
FAN06G2516 Fragaria x ananassa HOM05D003441 ORTHO05D004516 4.0e-20 102.1 136 47.8
Ah.12g058870 Amaranthus hybridus HOM05D003441 ORTHO05D004516 1.5e-19 100.1 119 49.6
FAN10G3500 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.5e-19 100.1 107 54.2
EL10Ac5g12531 Beta vulgaris HOM05D003441 ORTHO05D004516 7.5e-19 97.8 87 60.9
FAN18G3267 Fragaria x ananassa HOM05D003441 ORTHO05D004516 7.5e-19 97.8 88 61.4
Nn6g33339 Nelumbo nucifera HOM05D003441 ORTHO05D004516 9.8e-19 97.4 88 61.4
Oeu030097.4 Olea europaea HOM05D003441 ORTHO05D004516 9.8e-19 97.4 166 41.6
ClCG01G002520 Citrullus lanatus HOM05D003441 ORTHO05D004516 2.0e-16 89.7 82 62.2
CARHR183180 Cardamine hirsuta HOM05D003441 ORTHO05D004516 2.3e-15 86.3 114 47.4
FAN01G0379 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.5e-14 82.8 108 47.2
Haze_08814 Corylus avellana HOM05D003441 ORTHO05D004516 3.6e-13 79.0 122 41.0
SHI07185 Sapria himalayana HOM05D000105 ORTHO05D000023 3.4e-11 72.4 65 63.1
Lsat_1_v5_gn_2_120601 Lactuca sativa HOM05D003441 ORTHO05D004516 4.4e-11 72.0 68 63.2
FAN03G2549 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.3e-10 67.8 154 37.7
RcHm_v2.0_Chr1g0341621 Rosa chinensis HOM05D003441 ORTHO05D004516 1.6e-08 63.5 39 76.9
Lsat_1_v5_gn_2_120581 Lactuca sativa HOM05D003441 ORTHO05D004516 2.3e-07 59.7 65 56.9
AUR62022736 Chenopodium quinoa HOM05D003441 ORTHO05D004516 7.3e-06 54.7 63 49.2


User provided reference genes

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