Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_30049 Sequoiadendron giganteum HOM05D003132 ORTHO05D003736 2.4e-218 761.9 403 100.0
TAR624G0618 Trochodendron aralioides HOM05D003132 ORTHO05D003736 7.5e-42 175.6 216 50.5
Gohir.A06G040500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 1.6e-39 167.9 278 41.0
Prupe.1G506400 Prunus persica HOM05D003132 ORTHO05D003736 1.6e-39 167.9 262 41.6
Gohir.D06G041500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 2.0e-39 167.5 278 41.0
Thecc.08G116200 Theobroma cacao HOM05D003132 ORTHO05D003736 2.0e-39 167.5 301 39.9
Ciclev10001011m.g Citrus clementina HOM05D003132 ORTHO05D003736 7.8e-39 165.6 232 44.8
MBI03_g11133_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 7.8e-39 165.6 234 46.2
Cpa.g.sc828.2 Carica papaya HOM05D003132 ORTHO05D003736 1.0e-38 165.2 293 41.6
Manes.02G158500 Manihot esculenta HOM05D003132 ORTHO05D003736 2.3e-38 164.1 251 42.6
MD00G1104300 Malus domestica HOM05D003132 ORTHO05D003736 2.9e-38 163.7 262 40.1
TAR628G0266 Trochodendron aralioides HOM05D003132 ORTHO05D003736 5.0e-38 162.9 219 47.0
Gorai.010G046700 Gossypium raimondii HOM05D003132 ORTHO05D003736 1.1e-37 161.8 278 40.3
Nn1g08540 Nelumbo nucifera HOM05D003132 ORTHO05D003736 1.5e-37 161.4 215 45.1
BcaB06g26045 Brassica carinata HOM05D003132 ORTHO05D003736 1.9e-37 161.0 223 46.2
Potri.005G171500 Populus trichocarpa HOM05D003132 ORTHO05D003736 3.3e-37 160.2 282 39.7
QL12p035360 Quercus lobata HOM05D003132 ORTHO05D003736 3.3e-37 160.2 216 45.8
BcaC05g28420 Brassica carinata HOM05D003132 ORTHO05D003736 5.6e-37 159.5 241 43.2
BraA05t21832Z Brassica rapa HOM05D003132 ORTHO05D003736 5.6e-37 159.5 260 40.0
CARHR095280 Cardamine hirsuta HOM05D003132 ORTHO05D003736 5.6e-37 159.5 261 39.5
Dinv26724 Davidia involucrata HOM05D003132 ORTHO05D003736 5.6e-37 159.5 271 40.6
Actinidia29433 Actinidia chinensis HOM05D003132 ORTHO05D003736 7.3e-37 159.1 287 40.1
C05p45020 Brassica napus HOM05D003132 ORTHO05D003736 7.3e-37 159.1 242 42.6
Duzib041G0476 Durio zibethinus HOM05D003132 ORTHO05D003736 7.3e-37 159.1 278 38.5
Haze_00527 Corylus avellana HOM05D003132 ORTHO05D003736 9.5e-37 158.7 294 37.8
PGR044G0368 Punica granatum HOM05D003132 ORTHO05D003736 9.5e-37 158.7 294 37.8
Aqoxy5G02472 Aquilegia oxysepala HOM05D003132 ORTHO05D003736 1.2e-36 158.3 294 40.1
BcaB08g37217 Brassica carinata HOM05D003132 ORTHO05D003736 1.2e-36 158.3 278 39.2
A05p29830 Brassica napus HOM05D003132 ORTHO05D003736 1.6e-36 157.9 260 42.3
BolC5t33226H Brassica oleracea HOM05D003132 ORTHO05D003736 1.6e-36 157.9 241 42.7
Dinv27388 Davidia involucrata HOM05D003132 ORTHO05D003736 1.6e-36 157.9 218 45.9
Glyma.04G254000 Glycine max HOM05D003132 ORTHO05D003736 1.6e-36 157.9 213 45.5
Mapoly0003s0258 Marchantia polymorpha HOM05D003132 ORTHO05D003736 1.6e-36 157.9 245 42.0
TPR.G32950 Trifolium pratense HOM05D003132 ORTHO05D003736 1.6e-36 157.9 231 44.2
TWI56G0630 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 1.6e-36 157.9 214 44.4
COL.COLO4_21818 Corchorus olitorius HOM05D003132 ORTHO05D003736 2.1e-36 157.5 275 38.2
Sed0019762 Sechium edule HOM05D003132 ORTHO05D003736 2.1e-36 157.5 292 40.1
Cfa015956 Carpinus fangiana HOM05D003132 ORTHO05D003736 3.6e-36 156.8 282 37.9
Pp3c23_18370 Physcomitrium patens HOM05D003132 ORTHO05D003736 3.6e-36 156.8 308 39.3
Manes.18G072550 Manihot esculenta HOM05D003132 ORTHO05D003736 4.7e-36 156.4 269 41.6
Medtr3g073360 Medicago truncatula HOM05D003132 ORTHO05D003736 4.7e-36 156.4 234 41.9
AL3G33220 Arabidopsis lyrata HOM05D003132 ORTHO05D003736 6.1e-36 156.0 218 45.0
CDE06G0428 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 6.1e-36 156.0 239 42.3
CDE06G1857 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 6.1e-36 156.0 284 40.1
CsaV3_2G011340 Cucumis sativus L. HOM05D003132 ORTHO05D003736 6.1e-36 156.0 245 41.6
Sp6g33990 Schrenkiella parvula HOM05D003132 ORTHO05D003736 6.1e-36 156.0 281 37.7
ATR0171G023 Amborella trichopoda HOM05D003132 ORTHO05D003736 8.0e-36 155.6 262 41.2
Haze_00528 Corylus avellana HOM05D003132 ORTHO05D003736 8.0e-36 155.6 284 37.7
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 1.0e-35 155.2 280 37.9
AT3G19770 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 1.0e-35 155.2 218 43.6
Sabra05G0129000 Salix brachista HOM05D003132 ORTHO05D003736 1.0e-35 155.2 291 38.5
VMungo1309G0264 Vigna mungo HOM05D003132 ORTHO05D003736 1.0e-35 155.2 276 39.1
ClCG06G009880 Citrullus lanatus HOM05D003132 ORTHO05D003736 3.0e-35 153.7 267 39.7
Phvul.009G026000 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 3.0e-35 153.7 239 39.3
Sp3g17790 Schrenkiella parvula HOM05D003132 ORTHO05D003736 3.0e-35 153.7 213 46.5
DCAR_020428 Daucus carota HOM05D003132 ORTHO05D003736 5.2e-35 152.9 275 38.5
Glyma.06G108200 Glycine max HOM05D003132 ORTHO05D003736 5.2e-35 152.9 240 40.0
Lalb_Chr11g0065661 Lupinus albus HOM05D003132 ORTHO05D003736 5.2e-35 152.9 275 37.5
Rhsim11G0064900 Rhododendron simsii HOM05D003132 ORTHO05D003736 5.2e-35 152.9 223 42.2
THA.LOC104806806 Tarenaya hassleriana HOM05D003132 ORTHO05D003736 5.2e-35 152.9 228 42.1
ATR0495G010 Amborella trichopoda HOM05D003132 ORTHO05D003736 6.8e-35 152.5 267 40.1
Ca_25763_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 6.8e-35 152.5 230 41.7
Thhalv10020497m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 6.8e-35 152.5 338 37.0
RcHm_v2.0_Chr7g0240821 Rosa chinensis HOM05D003132 ORTHO05D003736 6.8e-35 152.5 247 41.3
SMO356G0397 Selaginella moellendorffii HOM05D003132 ORTHO05D003736 6.8e-35 152.5 217 46.5
vmacro00793 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 6.8e-35 152.5 214 43.9
CiPaw.05G229400 Carya illinoinensis HOM05D003132 ORTHO05D003736 8.9e-35 152.1 265 41.1
MELO3C008519.2 Cucumis melo HOM05D003132 ORTHO05D003736 8.9e-35 152.1 228 43.9
CiPaw.06G024400 Carya illinoinensis HOM05D003132 ORTHO05D003736 1.2e-34 151.8 258 43.0
HanXRQChr14g0440811 Helianthus annuus HOM05D003132 ORTHO05D003736 1.2e-34 151.8 244 40.6
Psat5g133920 Pisum sativum HOM05D003132 ORTHO05D003736 1.2e-34 151.8 229 41.9
SGA_v2.0_scaffold28G12034 Striga asiatica HOM05D003132 ORTHO05D003736 1.2e-34 151.8 298 37.6
A10p27920 Brassica napus HOM05D003132 ORTHO05D003736 2.0e-34 151.0 347 33.4
BraA10t44841Z Brassica rapa HOM05D003132 ORTHO05D003736 2.0e-34 151.0 285 36.8
ECA238G0880 Erigeron canadensis HOM05D003132 ORTHO05D003736 2.0e-34 151.0 229 42.4
PSO017G5000 Papaver somniferum HOM05D003132 ORTHO05D003736 2.0e-34 151.0 293 38.9
Lj7C306G6 Lonicera japonica HOM05D000316 ORTHO05D000374 2.6e-34 150.6 247 38.9
MD15G1358700 Malus domestica HOM05D003132 ORTHO05D003736 3.4e-34 150.2 293 37.5
BcaB08g37215 Brassica carinata HOM05D003132 ORTHO05D003736 4.4e-34 149.8 290 36.9
Thhalv10012815m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 5.8e-34 149.4 212 42.9
PGSC0003DMG400027521 Solanum tuberosum HOM05D003132 ORTHO05D003736 5.8e-34 149.4 259 40.5
Lj1g0008302 Lotus japonicus HOM05D003132 ORTHO05D003736 7.5e-34 149.1 276 39.1
Peaxi162Scf00647g00129 Petunia axillaris HOM05D003132 ORTHO05D003736 7.5e-34 149.1 244 40.6
Sopen01g040690 Solanum pennellii HOM05D003132 ORTHO05D003736 7.5e-34 149.1 244 41.4
unitig_21.g20190 Utricularia gibba HOM05D003132 ORTHO05D003736 7.5e-34 149.1 240 41.2
FAN08G0026 Fragaria x ananassa HOM05D003132 ORTHO05D003736 9.8e-34 148.7 248 40.7
Hund20801 Selenicereus undatus HOM05D003132 ORTHO05D003736 9.8e-34 148.7 240 40.0
Carub.0003s1964 Capsella rubella HOM05D003132 ORTHO05D003736 1.3e-33 148.3 286 38.8
arahy.Tifrunner.gnm1.ann1.KS02B5 Arachis hypogaea HOM05D003132 ORTHO05D003736 2.2e-33 147.5 214 43.5
arahy.Tifrunner.gnm1.ann1.M9VU1N Arachis hypogaea HOM05D003132 ORTHO05D003736 2.2e-33 147.5 271 37.6
FAN04G1930 Fragaria x ananassa HOM05D003132 ORTHO05D003736 2.2e-33 147.5 247 40.1
BolC9t59562H Brassica oleracea HOM05D003132 ORTHO05D003736 2.9e-33 147.1 280 38.6
CSS0019182 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 4.9e-33 146.4 280 38.6
Oeu001990.2 Olea europaea HOM05D003132 ORTHO05D003736 4.9e-33 146.4 307 36.5
Solyc01g096990.4 Solanum lycopersicum HOM05D003132 ORTHO05D003736 4.9e-33 146.4 250 40.4
Oeu039582.2 Olea europaea HOM05D003132 ORTHO05D003736 8.3e-33 145.6 276 37.0
Migut.C01198 Erythranthe guttata HOM05D003132 ORTHO05D003736 1.1e-32 145.2 287 37.3
FvH4_5g38820 Fragaria vesca HOM05D003132 ORTHO05D003736 1.4e-32 144.8 247 39.7
FAN18G1429 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.8e-32 144.4 247 39.7
FAN13G2880 Fragaria x ananassa HOM05D003132 ORTHO05D003736 3.2e-32 143.7 244 40.2
Sc01g0001580 Simmondsia chinensis HOM05D003132 ORTHO05D003736 4.1e-32 143.3 256 37.9
PSO170G1030 Papaver somniferum HOM05D003132 ORTHO05D003736 5.4e-32 142.9 299 38.1
CAN.G134.60 Capsicum annuum HOM05D003132 ORTHO05D003736 7.0e-32 142.5 287 35.9
Nitab4.5_0002247g0160 Nicotiana tabacum HOM05D003132 ORTHO05D003736 7.0e-32 142.5 249 41.0
Ah.05g172730 Amaranthus hybridus HOM05D003132 ORTHO05D003736 9.2e-32 142.1 262 37.4
Lsat_1_v5_gn_2_115101 Lactuca sativa HOM05D003132 ORTHO05D003736 1.2e-31 141.7 213 42.7
Nitab4.5_0004014g0020 Nicotiana tabacum HOM05D003132 ORTHO05D003736 2.0e-31 141.0 242 43.0
SalBow7G2329 Salvia bowleyana HOM05D003132 ORTHO05D003736 2.0e-31 141.0 282 35.8
HPP92_002181 Vanilla planifolia HOM05D003132 ORTHO05D003736 2.0e-31 141.0 239 38.1
AT5G09320 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 1.0e-30 138.7 219 42.0
SalBow7G4391 Salvia bowleyana HOM05D003132 ORTHO05D003736 1.7e-30 137.9 282 35.8
Zm00001eb398120 Zea mays HOM05D003132 ORTHO05D003736 1.7e-30 137.9 285 35.8
HanXRQChr15g0496671 Helianthus annuus HOM05D003132 ORTHO05D003736 2.5e-29 134.0 213 39.9
AUR62023605 Chenopodium quinoa HOM05D003132 ORTHO05D003736 9.5e-29 132.1 204 39.2
Carub.0006s0787 Capsella rubella HOM05D003132 ORTHO05D003736 1.6e-28 131.3 245 37.6
EL10Ac1g00043 Beta vulgaris HOM05D003132 ORTHO05D003736 1.1e-27 128.6 322 31.4
CARHR204070 Cardamine hirsuta HOM05D003132 ORTHO05D003736 1.4e-27 128.3 214 40.7
AUR62004688 Chenopodium quinoa HOM05D003132 ORTHO05D003736 2.3e-27 127.5 309 33.3
CSS0047902 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 4.0e-27 126.7 253 38.3
ECA246G0273 Erigeron canadensis HOM05D003132 ORTHO05D003736 2.0e-26 124.4 222 35.6
vmacro00917 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 2.4e-24 117.5 212 38.7
C09p68030 Brassica napus HOM05D003132 ORTHO05D003736 4.1e-24 116.7 191 39.8
Dinv22067 Davidia involucrata HOM05D003132 ORTHO05D003736 4.1e-24 116.7 245 36.7
Lsat_1_v5_gn_9_67980 Lactuca sativa HOM05D003132 ORTHO05D003736 2.1e-23 114.4 213 36.2
SGA_v2.0_scaffold118G32441 Striga asiatica HOM05D003132 ORTHO05D003736 2.7e-23 114.0 213 36.2
BcaC05g28406 Brassica carinata HOM05D003132 ORTHO05D003736 3.5e-23 113.6 183 41.0
ATR1089G070 Amborella trichopoda HOM05D003132 ORTHO05D003736 4.6e-23 113.2 232 37.1
Rhsim12G0001000 Rhododendron simsii HOM05D003132 ORTHO05D003736 4.6e-23 113.2 212 37.3
Eucgr.F03739 Eucalyptus grandis HOM05D003132 ORTHO05D003736 6.0e-23 112.8 89 68.5
Atru.chr13.1311 Acer truncatum HOM05D003132 ORTHO05D003736 1.7e-22 111.3 75 74.7
Atru.chr13.1355 Acer truncatum HOM05D003132 ORTHO05D003736 1.7e-22 111.3 75 74.7
GSVIVG01008947001 Vitis vinifera HOM05D003132 ORTHO05D003736 3.9e-22 110.2 75 73.3
Hma1.2p1_0378F.1_g139670 Hydrangea macrophylla HOM05D003132 ORTHO05D003736 6.6e-22 109.4 212 37.7
Actinidia01536 Actinidia chinensis HOM05D003132 ORTHO05D003736 1.1e-21 108.6 213 35.2
MD10G1001000 Malus domestica HOM05D003132 ORTHO05D003736 2.5e-21 107.5 251 35.9
Nn5g27185 Nelumbo nucifera HOM05D003132 ORTHO05D003736 4.3e-21 106.7 239 35.1
SGA_v2.0_scaffold297G47601 Striga asiatica HOM05D003132 ORTHO05D003736 4.3e-21 106.7 214 36.0
Duzib177G0974 Durio zibethinus HOM05D003132 ORTHO05D003736 1.2e-20 105.1 224 34.8
PGR102G0292 Punica granatum HOM05D003132 ORTHO05D003736 1.6e-20 104.8 222 38.3
Manes.18G119900 Manihot esculenta HOM05D003132 ORTHO05D003736 2.1e-20 104.4 261 33.7
CBR_g241 Chara braunii HOM05D003132 ORTHO05D003736 3.6e-20 103.6 321 30.5
Ciclev10020271m.g Citrus clementina HOM05D003132 ORTHO05D003736 8.1e-20 102.4 219 35.2
Potri.019G066200 Populus trichocarpa HOM05D003132 ORTHO05D003736 1.8e-19 101.3 221 33.9
CDE04G2334 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 2.3e-19 100.9 226 34.5
Gohir.A08G230900 Gossypium hirsutum HOM05D003132 ORTHO05D003736 2.3e-19 100.9 223 34.5
FvH4_2g00230 Fragaria vesca HOM05D003132 ORTHO05D003736 3.1e-19 100.5 255 33.3
FAN19G2774 Fragaria x ananassa HOM05D003132 ORTHO05D003736 5.2e-19 99.8 248 33.9
Prupe.8G002200 Prunus persica HOM05D003132 ORTHO05D003736 5.2e-19 99.8 230 34.3
FAN24G0668 Fragaria x ananassa HOM05D003132 ORTHO05D003736 6.8e-19 99.4 248 33.5
TAR628G0652 Trochodendron aralioides HOM05D003132 ORTHO05D003736 6.8e-19 99.4 221 35.7
Gorai.004G268000 Gossypium raimondii HOM05D003132 ORTHO05D003736 2.6e-18 97.4 223 34.1
RcHm_v2.0_Chr6g0249521 Rosa chinensis HOM05D003132 ORTHO05D003736 3.4e-18 97.1 262 31.7
QL09p001110 Quercus lobata HOM05D003132 ORTHO05D003736 4.4e-18 96.7 248 33.9
arahy.Tifrunner.gnm1.ann1.F59MVU Arachis hypogaea HOM05D003132 ORTHO05D003736 5.8e-18 96.3 213 33.8
arahy.Tifrunner.gnm1.ann1.M3HMN7 Arachis hypogaea HOM05D003132 ORTHO05D003736 5.8e-18 96.3 213 33.8
Eucgr.F04096 Eucalyptus grandis HOM05D003132 ORTHO05D003736 5.8e-18 96.3 232 34.5
Atru.chr13.2600 Acer truncatum HOM05D003132 ORTHO05D003736 7.5e-18 95.9 75 65.3
CiPaw.03G011700 Carya illinoinensis HOM05D003132 ORTHO05D003736 7.5e-18 95.9 244 33.2
TWI12G0091 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 7.5e-18 95.9 71 69.0
Medtr3g009180 Medicago truncatula HOM05D003132 ORTHO05D003736 1.3e-17 95.1 231 33.8
Gohir.D08G251300 Gossypium hirsutum HOM05D003132 ORTHO05D003736 6.4e-17 92.8 64 73.4
MBI03_g39997_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 1.1e-16 92.0 222 33.3
Ca_14120_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 3.2e-16 90.5 206 32.5
Haze_14017 Corylus avellana HOM05D003132 ORTHO05D003736 3.2e-16 90.5 69 63.8
COL.COLO4_25069 Corchorus olitorius HOM05D003132 ORTHO05D003736 4.1e-16 90.1 66 66.7
AagrBONN_evm.TU.Sc2ySwM_368.655 Anthoceros agrestis HOM05D003132 ORTHO05D003736 5.4e-16 89.7 269 30.9
Lj3g0025144 Lotus japonicus HOM05D003132 ORTHO05D003736 5.4e-16 89.7 214 32.7
Cfa021494 Carpinus fangiana HOM05D003132 ORTHO05D003736 7.1e-16 89.4 63 68.3
TPR.G16695 Trifolium pratense HOM05D003132 ORTHO05D003736 7.1e-16 89.4 229 32.8
Cpa.g.sc249.17 Carica papaya HOM05D003132 ORTHO05D003736 9.2e-16 89.0 227 32.6
VMungo1080G0294 Vigna mungo HOM05D003132 ORTHO05D003736 9.2e-16 89.0 236 31.8
FvH4_3g37600 Fragaria vesca HOM05D003132 ORTHO05D003736 3.5e-15 87.0 73 61.6
Psat5g230840 Pisum sativum HOM05D003132 ORTHO05D003736 1.3e-14 85.1 84 56.0
Glyma.04G116900 Glycine max HOM05D003132 ORTHO05D003736 2.3e-14 84.3 213 32.4
PRCOL_00006551 Prasinoderma coloniale HOM05D003132 ORTHO05D003736 3.0e-14 84.0 254 30.7
Phvul.005G006600 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 8.6e-14 82.4 234 31.2
Zm00001eb064020 Zea mays HOM05D003132 ORTHO05D003736 5.6e-13 79.7 125 39.2
Lj9C693G4 Lonicera japonica HOM05D003132 ORTHO05D003736 1.8e-11 74.7 195 30.8
Zm00001eb090720 Zea mays HOM05D003132 ORTHO05D003736 4.4e-10 70.1 65 49.2
Sabra19G0078500 Salix brachista HOM05D003132 ORTHO05D003736 2.2e-09 67.8 203 28.6
C05p44900 Brassica napus HOM05D003132 ORTHO05D033514 2.1e-07 61.2 62 46.8
Atru.chr13.1312 Acer truncatum HOM05D003132 ORTHO05D026271 6.6e-06 56.2 53 47.2
Cre12.g547450 Chlamydomonas reinhardtii HOM05D003132 ORTHO05D003736 6.6e-06 56.2 66 43.9


User provided reference genes

Program Settings