Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_27948 Sequoiadendron giganteum HOM05D001392 ORTHO05D006407 6.3e-54 213.8 103 100.0
Pp3c12_13790 Physcomitrium patens HOM05D001392 ORTHO05D006407 3.1e-16 88.6 79 53.2
ATR0697G119 Amborella trichopoda HOM05D001392 ORTHO05D006407 1.5e-15 86.3 65 61.5
AagrBONN_evm.TU.Sc2ySwM_228.2529 Anthoceros agrestis HOM05D001392 ORTHO05D006407 3.4e-15 85.1 78 51.3
Lj2g0008629 Lotus japonicus HOM05D001392 ORTHO05D006407 3.4e-15 85.1 70 55.7
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 5.8e-15 84.3 67 58.2
Potri.017G124500 Populus trichocarpa HOM05D001392 ORTHO05D006407 7.6e-15 84.0 67 58.2
Lalb_Chr14g0364821 Lupinus albus HOM05D001392 ORTHO05D006407 1.7e-14 82.8 70 55.7
Ca_25679_v3 Cicer arietinum L. HOM05D001392 ORTHO05D006407 2.2e-14 82.4 60 60.0
Dinv19030 Davidia involucrata HOM05D001392 ORTHO05D006407 4.9e-14 81.3 65 55.4
THA.LOC104827192 Tarenaya hassleriana HOM05D001392 ORTHO05D006407 4.9e-14 81.3 67 55.2
Manes.02G076200 Manihot esculenta HOM05D001392 ORTHO05D006407 6.4e-14 80.9 77 49.4
PSO339G4038 Papaver somniferum HOM05D001392 ORTHO05D006407 1.1e-13 80.1 70 54.3
TPR.G35631 Trifolium pratense HOM05D001392 ORTHO05D006407 1.1e-13 80.1 60 58.3
vmacro18535 Vaccinium macrocarpon HOM05D001392 ORTHO05D006407 1.1e-13 80.1 65 53.8
VMungo0464G0907 Vigna mungo HOM05D001392 ORTHO05D006407 1.9e-13 79.3 70 52.9
Lj4A264G50 Lonicera japonica HOM05D001392 ORTHO05D006407 2.4e-13 79.0 65 53.8
Peaxi162Scf00057g02722 Petunia axillaris HOM05D001392 ORTHO05D006407 2.4e-13 79.0 68 51.5
PGR004G0453 Punica granatum HOM05D001392 ORTHO05D006407 2.4e-13 79.0 65 53.8
QL07p019084 Quercus lobata HOM05D001392 ORTHO05D006407 2.4e-13 79.0 70 48.6
Solyc12g019110.3 Solanum lycopersicum HOM05D001392 ORTHO05D006407 2.4e-13 79.0 65 56.9
Sopen12g009300 Solanum pennellii HOM05D001392 ORTHO05D006407 2.4e-13 79.0 65 56.9
Ah.12g060150 Amaranthus hybridus HOM05D001392 ORTHO05D006407 3.2e-13 78.6 64 56.2
Potri.004G090732 Populus trichocarpa HOM05D001392 ORTHO05D006407 3.2e-13 78.6 55 63.6
Haze_20419 Corylus avellana HOM05D001392 ORTHO05D006407 4.2e-13 78.2 64 56.2
arahy.Tifrunner.gnm1.ann1.XLS2Y4 Arachis hypogaea HOM05D001392 ORTHO05D006407 5.4e-13 77.8 68 52.9
CAN.G207.6 Capsicum annuum HOM05D001392 ORTHO05D006407 5.4e-13 77.8 65 56.9
Cfa017719 Carpinus fangiana HOM05D001392 ORTHO05D006407 5.4e-13 77.8 65 53.8
Rhsim08G0018500 Rhododendron simsii HOM05D001392 ORTHO05D006407 5.4e-13 77.8 80 46.2
arahy.Tifrunner.gnm1.ann1.0T11RW Arachis hypogaea HOM05D001392 ORTHO05D006407 7.1e-13 77.4 68 52.9
CANSAT71G0007 Cannabis sativa HOM05D001392 ORTHO05D006407 7.1e-13 77.4 65 53.8
Phvul.004G073700 Phaseolus vulgaris HOM05D001392 ORTHO05D006407 7.1e-13 77.4 70 51.4
Psat1g089800 Pisum sativum HOM05D001392 ORTHO05D006407 7.1e-13 77.4 60 55.0
MSTRG.4620 Avicennia marina HOM05D001392 ORTHO05D006407 9.3e-13 77.0 65 55.4
ClCG05G011510 Citrullus lanatus HOM05D001392 ORTHO05D006407 9.3e-13 77.0 67 49.3
Os07g0163500 Oryza sativa ssp. japonica HOM05D001392 ORTHO05D006407 9.3e-13 77.0 65 53.8
GSVIVG01027222001 Vitis vinifera HOM05D001392 ORTHO05D006407 9.3e-13 77.0 65 52.3
GSVIVG01030775001 Vitis vinifera HOM05D001392 ORTHO05D006407 9.3e-13 77.0 65 52.3
DCAR_003434 Daucus carota HOM05D001392 ORTHO05D006407 1.2e-12 76.6 64 53.1
Hma1.2p1_0524F.1_g172350 Hydrangea macrophylla HOM05D001392 ORTHO05D006407 1.2e-12 76.6 64 51.6
MBI11_g24566_MAGBIO Magnolia biondii HOM05D001392 ORTHO05D006407 1.2e-12 76.6 60 58.3
TWI74G1301 Tripterygium wilfordii HOM05D001392 ORTHO05D006407 1.2e-12 76.6 65 55.4
HPP92_000859 Vanilla planifolia HOM05D001392 ORTHO05D006407 1.2e-12 76.6 65 55.4
CiPaw.09G167000 Carya illinoinensis HOM05D001392 ORTHO05D006407 1.6e-12 76.3 65 50.8
Gohir.A10G243050 Gossypium hirsutum HOM05D001392 ORTHO05D006407 1.6e-12 76.3 65 53.8
Mapoly0040s0139 Marchantia polymorpha HOM05D001392 ORTHO05D006407 1.6e-12 76.3 46 71.7
Medtr6g027620 Medicago truncatula HOM05D001392 ORTHO05D006407 1.6e-12 76.3 60 55.0
PSO384G0294 Papaver somniferum HOM05D001392 ORTHO05D006407 1.6e-12 76.3 55 63.6
Hund13115 Selenicereus undatus HOM05D001392 ORTHO05D006407 1.6e-12 76.3 70 50.0
Aa31LG11G12960 Aethionema arabicum HOM05D001392 ORTHO05D006407 2.1e-12 75.9 67 53.7
CSS0004873 Camellia sinensis var. sinensis HOM05D001392 ORTHO05D006407 2.1e-12 75.9 65 52.3
CSS0005968 Camellia sinensis var. sinensis HOM05D001392 ORTHO05D006407 2.1e-12 75.9 65 52.3
AUR62018211 Chenopodium quinoa HOM05D001392 ORTHO05D006407 2.1e-12 75.9 65 53.8
AUR62038698 Chenopodium quinoa HOM05D001392 ORTHO05D006407 2.1e-12 75.9 68 52.9
Eucgr.F02848 Eucalyptus grandis HOM05D001392 ORTHO05D006407 2.1e-12 75.9 65 50.8
Thecc.04G116700 Theobroma cacao HOM05D001392 ORTHO05D006407 2.1e-12 75.9 65 55.4
SalBow5G1075 Salvia bowleyana HOM05D001392 ORTHO05D006407 2.7e-12 75.5 65 52.3
TAR623G1183 Trochodendron aralioides HOM05D001392 ORTHO05D006407 2.7e-12 75.5 63 55.6
Zm00001eb117220 Zea mays HOM05D001392 ORTHO05D006407 2.7e-12 75.5 68 50.0
Thhalv10012577m.g Eutrema salsugineum HOM05D001392 ORTHO05D006407 3.5e-12 75.1 67 53.7
RcHm_v2.0_Chr1g0328051 Rosa chinensis HOM05D001392 ORTHO05D006407 3.5e-12 75.1 70 48.6
AL6G27720 Arabidopsis lyrata HOM05D001392 ORTHO05D006407 4.6e-12 74.7 67 53.7
AT5G16715 Arabidopsis thaliana HOM05D001392 ORTHO05D006407 4.6e-12 74.7 67 52.2
Nitab4.5_0003197g0040 Nicotiana tabacum HOM05D001392 ORTHO05D006407 4.6e-12 74.7 55 60.0
Actinidia35731 Actinidia chinensis HOM05D001392 ORTHO05D006407 6.0e-12 74.3 65 50.8
C09p60360 Brassica napus HOM05D001392 ORTHO05D006407 6.0e-12 74.3 67 52.2
BolC9t58869H Brassica oleracea HOM05D001392 ORTHO05D006407 6.0e-12 74.3 67 52.2
Gohir.D10G255000 Gossypium hirsutum HOM05D001392 ORTHO05D006407 6.0e-12 74.3 55 60.0
Gorai.011G296000 Gossypium raimondii HOM05D001392 ORTHO05D006407 6.0e-12 74.3 55 60.0
Sp6g27440 Schrenkiella parvula HOM05D001392 ORTHO05D006407 6.0e-12 74.3 67 52.2
Carub.0006s1493 Capsella rubella HOM05D001392 ORTHO05D006407 7.8e-12 73.9 67 52.2
Cpa.g.sc116.46 Carica papaya HOM05D001392 ORTHO05D006407 7.8e-12 73.9 68 50.0
FAN03G0802 Fragaria x ananassa HOM05D001392 ORTHO05D006407 7.8e-12 73.9 69 50.7
Aqoxy2G00612 Aquilegia oxysepala HOM05D001392 ORTHO05D006407 1.0e-11 73.6 80 45.0
CDE10G1341 Ceratophyllum demersum HOM05D001392 ORTHO05D006407 1.0e-11 73.6 60 53.3
Migut.D01299 Erythranthe guttata HOM05D001392 ORTHO05D006407 1.0e-11 73.6 55 58.2
FvH4_7g04130 Fragaria vesca HOM05D001392 ORTHO05D006407 1.0e-11 73.6 69 50.7
COL.COLO4_09038 Corchorus olitorius HOM05D001392 ORTHO05D006407 1.3e-11 73.2 65 50.8
Atru.chr1.1875 Acer truncatum HOM05D001392 ORTHO05D006407 1.7e-11 72.8 65 52.3
CARHR196470 Cardamine hirsuta HOM05D001392 ORTHO05D006407 1.7e-11 72.8 67 50.7
GSVIVG01010703001 Vitis vinifera HOM05D001392 ORTHO05D006407 1.7e-11 72.8 55 56.4
Ciclev10010998m.g Citrus clementina HOM05D001392 ORTHO05D006407 2.3e-11 72.4 65 49.2
Glyma.17G186800 Glycine max HOM05D001392 ORTHO05D006407 2.3e-11 72.4 55 56.4
Lsat_1_v5_gn_3_65141 Lactuca sativa HOM05D001392 ORTHO05D006407 2.3e-11 72.4 55 58.2
BcaC04g18859 Brassica carinata HOM05D001392 ORTHO05D006407 3.0e-11 72.0 67 50.7
BraA10t44310Z Brassica rapa HOM05D001392 ORTHO05D006407 3.0e-11 72.0 67 50.7
MELO3C020199.2 Cucumis melo HOM05D001392 ORTHO05D006407 3.0e-11 72.0 64 46.9
CsaV3_3G020830 Cucumis sativus L. HOM05D001392 ORTHO05D006407 3.0e-11 72.0 64 46.9
Gorai.002G268700 Gossypium raimondii HOM05D001392 ORTHO05D006407 3.0e-11 72.0 54 59.3
MD05G1034800 Malus domestica HOM05D001392 ORTHO05D006407 3.0e-11 72.0 70 45.7
MD09G1264400 Malus domestica HOM05D001392 ORTHO05D006407 3.0e-11 72.0 70 45.7
A10p22510 Brassica napus HOM05D001392 ORTHO05D006407 3.9e-11 71.6 67 50.7
Nn7g38289 Nelumbo nucifera HOM05D001392 ORTHO05D006407 3.9e-11 71.6 60 51.7
HanXRQChr10g0283681 Helianthus annuus HOM05D001392 ORTHO05D006407 5.1e-11 71.2 55 52.7
Sc14g0006490 Simmondsia chinensis HOM05D001392 ORTHO05D006407 1.1e-10 70.1 65 49.2
SGA_v2.0_scaffold40G15632 Striga asiatica HOM05D001392 ORTHO05D006407 1.1e-10 70.1 80 42.5
MCO14G022 Micromonas commoda HOM05D001392 ORTHO05D006407 1.5e-10 69.7 59 50.8
Duzib133G1570 Durio zibethinus HOM05D001392 ORTHO05D006407 5.6e-10 67.8 54 57.4
unitig_749.g13792 Utricularia gibba HOM05D001392 ORTHO05D006407 5.6e-10 67.8 67 41.8
Sed0009589 Sechium edule HOM05D001392 ORTHO05D006407 1.4e-08 63.2 89 37.1
ECA246G3910 Erigeron canadensis HOM05D001392 ORTHO05D006407 2.4e-08 62.4 55 47.3
PRCOL_00006335 Prasinoderma coloniale HOM05D001392 ORTHO05D006407 4.0e-08 61.6 76 40.8
FAN03G1326 Fragaria x ananassa HOM05D001392 ORTHO05D006407 2.0e-07 59.3 51 51.0
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 9.9e-07 57.0 37 62.2
Cre07.g350500 Chlamydomonas reinhardtii HOM05D001392 ORTHO05D006407 3.8e-06 55.1 45 46.7
MD17G1259800 Malus domestica HOM05D001392 ORTHO05D006407 4.9e-06 54.7 37 56.8


User provided reference genes

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