Gene: PSO339G4038
General Information
Structural Information
- Species Papaver somniferum
- Gene Identifier PSO339G4038
- Transcript Identifier PSO339G4038.02
- Gene Type Coding gene
- Location NC_039366.1 : 99787964-99798511 : negative
Gene Family Information
- ID HOM05D001392
- #Genes/#Species 451/99
- Phylogenetic origin
- ID ORTHO05D006407
- #Genes/#Species 143/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid rna-XM_026558945.1
- pid XP_026414730.1
- id gene-LOC113310322
Descriptions
- product valine--tRNA ligase, chloroplastic/mitochondrial 2-like, transcript variant X2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006418 | IEA | InterPro | tRNA aminoacylation for protein translation | |
| GO:0006438 | IEA | InterPro | valyl-tRNA aminoacylation | |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT5G16715 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0004812 | IEA | InterPro | aminoacyl-tRNA ligase activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0004832 | IEA | InterPro | valine-tRNA ligase activity | |
| GO:0002161 | IEA | InterPro | aminoacyl-tRNA editing activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | InterPro | cytoplasm | |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT5G16715 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G16715 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002300 | Aminoacyl-tRNA synthetase, class Ia |
| IPR002303 | Valine-tRNA ligase |
| IPR009008 | Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain |
| IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
| IPR033705 | Valyl tRNA synthetase, anticodon-binding domain |
| IPR037118 | Valyl-tRNA synthetase, tRNA-binding arm superfamily |
| IPR009080 | Aminoacyl-tRNA synthetase, class Ia, anticodon-binding |
| IPR010978 | Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm |
| IPR013155 | Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding |
| IPR019499 | Valyl-tRNA synthetase, tRNA-binding arm |
| Mapman id | Description |
|---|---|
| 17.2.22 | Protein biosynthesis.aminoacyl-tRNA synthetase activities.valine-tRNA ligase |