Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001392', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '451', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A06p10670' => 'bna', 'A07p13380' => 'bna', 'A07p13390' => 'bna', 'A08p27330' => 'bna', 'A08p31910' => 'bna', 'A09p61990' => 'bna', 'A10p22510' => 'bna', 'Aa31LG11G12960' => 'aar', 'Aa31LG1G460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3855' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4580' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3387' => 'aag', 'Actinidia23793' => 'ach', 'Actinidia25176' => 'ach', 'Actinidia28813' => 'ach', 'Actinidia28814' => 'ach', 'Actinidia28815' => 'ach', 'Actinidia32900' => 'ach', 'Actinidia32901' => 'ach', 'Actinidia32902' => 'ach', 'Actinidia34075' => 'ach', 'Actinidia34544' => 'ach', 'Actinidia35731' => 'ach', 'Ah.03g134560' => 'amhyb', 'Ah.12g060150' => 'amhyb', 'AL1G26580' => 'aly', 'AL1G38320' => 'aly', 'AL3G41580' => 'aly', 'AL6G27720' => 'aly', 'Aqoxy2G00612' => 'aox', 'Aqoxy2G00887' => 'aox', 'Aqoxy2G00888' => 'aox', 'Aqoxy2G00889' => 'aox', 'Aqoxy2G00890' => 'aox', 'Aqoxy2G03097' => 'aox', 'Aqoxy7G00465' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0T11RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K04UQ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R98RGQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLS2Y4' => 'arhy', 'AT1G14610' => 'ath', 'AT1G27160' => 'ath', 'AT5G16715' => 'ath', 'ATR0697G119' => 'atr', 'ATR0782G056' => 'atr', 'Atru.chr1.1875' => 'acertr', 'AUR62002803' => 'cqu', 'AUR62014110' => 'cqu', 'AUR62014114' => 'cqu', 'AUR62018211' => 'cqu', 'AUR62038698' => 'cqu', 'AUR62038699' => 'cqu', 'BcaB02g06531' => 'bca', 'BcaB03g13091' => 'bca', 'BcaB03g14115' => 'bca', 'BcaB03g14116' => 'bca', 'BcaC04g18858' => 'bca', 'BcaC04g18859' => 'bca', 'BcaC05g25377' => 'bca', 'BcaC06g34238' => 'bca', 'BcaC06g35085' => 'bca', 'BcaC06g35086' => 'bca', 'BcaC07g38749' => 'bca', 'BcaC07g41556' => 'bca', 'BcaNung05660' => 'bca', 'BolC3t19544H' => 'bol', 'BolC5t30002H' => 'bol', 'BolC7t42520H' => 'bol', 'BolC8t49300H' => 'bol', 'BolC8t52110H' => 'bol', 'BolC9t58869H' => 'bol', 'BraA06t24247Z' => 'bra', 'BraA07t29110Z' => 'bra', 'BraA07t29111Z' => 'bra', 'BraA08t34676Z' => 'bra', 'BraA08t35113Z' => 'bra', 'BraA09t41562Z' => 'bra', 'BraA10t44310Z' => 'bra', 'C05p12580' => 'bna', 'C07p20010' => 'bna', 'C08p16790' => 'bna', 'C08p45570' => 'bna', 'C09p60360' => 'bna', 'CAN.G1091.5' => 'can', 'CAN.G207.6' => 'can', 'CAN.G703.8' => 'can', 'CANSAT56G1922' => 'cansat', 'CANSAT56G2795' => 'cansat', 'CANSAT71G0007' => 'cansat', 'CARHR015110' => 'chi', 'CARHR024700' => 'chi', 'CARHR024710' => 'chi', 'CARHR144600' => 'chi', 'CARHR196470' => 'chi', 'CARHR260940' => 'chi', 'Carub.0001s1437' => 'cru', 'Carub.0001s3391' => 'cru', 'Carub.0005s0101' => 'cru', 'Carub.0006s1493' => 'cru', 'Ca_10801_v3' => 'car', 'Ca_25679_v3' => 'car', 'CBR_g31285' => 'cbr', 'CBR_g4483' => 'cbr', 'CBR_g88870' => 'cbr', 'Cc06_g03770' => 'ccan', 'CDE08G1587' => 'cde', 'CDE10G1341' => 'cde', 'Cfa008272' => 'cfa', 'Cfa017719' => 'cfa', 'Cfa021716' => 'cfa', 'Ciclev10004208m.g' => 'ccl', 'Ciclev10010998m.g' => 'ccl', 'CiPaw.04G068200' => 'cil', 'CiPaw.09G167000' => 'cil', 'CiPaw.09G167100' => 'cil', 'ClCG01G005670' => 'cla', 'ClCG01G005680' => 'cla', 'ClCG05G011510' => 'cla', 'COL.COLO4_04102' => 'col', 'COL.COLO4_09038' => 'col', 'COL.COLO4_09039' => 'col', 'COL.COLO4_25471' => 'col', 'COL.COLO4_31125' => 'col', 'Cpa.g.sc116.46' => 'cpa', 'Cpa.g.sc2.74' => 'cpa', 'Cre07.g350500' => 'cre', 'Cre12.g537100' => 'cre', 'CsaV3_3G020830' => 'csa', 'CsaV3_5G005900' => 'csa', 'CSS0004873' => 'camsi', 'CSS0005968' => 'camsi', 'CSS0006913' => 'camsi', 'CSS0026523' => 'camsi', 'CSS0030571' => 'camsi', 'DCAR_003434' => 'dca', 'DCAR_020225' => 'dca', 'Dinv19030' => 'din', 'Dinv31233' => 'din', 'Dinv36391' => 'din', 'Duzib133G1570' => 'dzi', 'Duzib170G0790' => 'dzi', 'ECA240G1446' => 'eca', 'ECA240G2105' => 'eca', 'ECA246G3910' => 'eca', 'EL10Ac2g03165' => 'bvu', 'EL10Ac5g11700' => 'bvu', 'EL10Ac8g19565' => 'bvu', 'Eucgr.E01106' => 'egr', 'Eucgr.F02848' => 'egr', 'Eucgr.F04425' => 'egr', 'FAN01G1271' => 'fan', 'FAN01G1312' => 'fan', 'FAN03G0802' => 'fan', 'FAN03G1076' => 'fan', 'FAN03G1326' => 'fan', 'FAN03G1857' => 'fan', 'FAN06G0336' => 'fan', 'FAN06G0463' => 'fan', 'FAN06G1244' => 'fan', 'FAN06G3412' => 'fan', 'FAN06G3456' => 'fan', 'FAN10G1869' => 'fan', 'FAN10G3015' => 'fan', 'FAN13G1017' => 'fan', 'FAN18G4114' => 'fan', 'FAN23G3091' => 'fan', 'FvH4_5g33250' => 'fve', 'FvH4_7g01700' => 'fve', 'FvH4_7g04130' => 'fve', 'FvH4_7g28901' => 'fve', 'FvH4_7g28940' => 'fve', 'Glyma.05G089050' => 'gma', 'Glyma.10G239500' => 'gma', 'Glyma.17G186800' => 'gma', 'Glyma.17G186900' => 'gma', 'Glyma.17G187000' => 'gma', 'Glyma.18G051300' => 'gma', 'Glyma.20G155000' => 'gma', 'Gohir.A01G231880' => 'ghi', 'Gohir.A08G018000' => 'ghi', 'Gohir.A08G253800' => 'ghi', 'Gohir.A10G243050' => 'ghi', 'Gohir.A12G276975' => 'ghi', 'Gohir.A12G277201' => 'ghi', 'Gohir.D01G140701' => 'ghi', 'Gohir.D01G222000' => 'ghi', 'Gohir.D03G178350' => 'ghi', 'Gohir.D07G000261' => 'ghi', 'Gohir.D07G000800' => 'ghi', 'Gohir.D08G028600' => 'ghi', 'Gohir.D08G275314' => 'ghi', 'Gohir.D09G073701' => 'ghi', 'Gohir.D10G255000' => 'ghi', 'Gohir.D11G349100' => 'ghi', 'Gohir.D11G349400' => 'ghi', 'Gohir.D12G131400' => 'ghi', 'Gohir.D12G141700' => 'ghi', 'Gorai.002G000100' => 'gra', 'Gorai.002G172800' => 'gra', 'Gorai.002G268700' => 'gra', 'Gorai.004G025700' => 'gra', 'Gorai.005G269400' => 'gra', 'Gorai.005G269600' => 'gra', 'Gorai.005G269800' => 'gra', 'Gorai.006G101900' => 'gra', 'Gorai.006G274700' => 'gra', 'Gorai.007G000600' => 'gra', 'Gorai.007G379600' => 'gra', 'Gorai.008G142700' => 'gra', 'Gorai.008G153100' => 'gra', 'Gorai.008G298700' => 'gra', 'Gorai.008G298900' => 'gra', 'Gorai.011G000300' => 'gra', 'Gorai.011G296000' => 'gra', 'Gorai.N015700' => 'gra', 'GSVIVG01010632001' => 'vvi', 'GSVIVG01010703001' => 'vvi', 'GSVIVG01027222001' => 'vvi', 'GSVIVG01030775001' => 'vvi', 'GSVIVG01030776001' => 'vvi', 'HanXRQChr03g0071441' => 'han', 'HanXRQChr07g0197731' => 'han', 'HanXRQChr10g0283681' => 'han', 'HanXRQChr14g0461381' => 'han', 'Haze_10572' => 'cav', 'Haze_13765' => 'cav', 'Haze_13766' => 'cav', 'Haze_13767' => 'cav', 'Haze_20419' => 'cav', 'Haze_26620' => 'cav', 'Hma1.2p1_0524F.1_g172340' => 'hma', 'Hma1.2p1_0524F.1_g172350' => 'hma', 'Hma1.2p1_0524F.1_g172360' => 'hma', 'Hma1.2p1_0524F.1_g172370' => 'hma', 'Hma1.2p1_1840F.1_g304930' => 'hma', 'Hma1.2p1_1840F.1_g304940' => 'hma', 'HPP92_000859' => 'vpl', 'HPP92_000860' => 'vpl', 'HPP92_000864' => 'vpl', 'HPP92_001073' => 'vpl', 'HPP92_001074' => 'vpl', 'Hund13115' => 'sun', 'Hund20713' => 'sun', 'Hund20715' => 'sun', 'Lalb_Chr12g0210011' => 'lal', 'Lalb_Chr14g0364821' => 'lal', 'Lj2g0008629' => 'lja', 'Lj4A264G50' => 'lonja', 'Lj9C302G3' => 'lonja', 'LjContig00238g0000416' => 'lja', 'Lsat_1_v5_gn_0_3280' => 'lsa', 'Lsat_1_v5_gn_1_100720' => 'lsa', 'Lsat_1_v5_gn_1_100761' => 'lsa', 'Lsat_1_v5_gn_3_65141' => 'lsa', 'Lsat_1_v5_gn_4_121141' => 'lsa', 'Lsat_1_v5_gn_4_173780' => 'lsa', 'Lsat_1_v5_gn_5_24801' => 'lsa', 'Lsat_1_v5_gn_5_61861' => 'lsa', 'Lsat_1_v5_gn_7_60700' => 'lsa', 'Lsat_1_v5_gn_7_60720' => 'lsa', 'Lsat_1_v5_gn_7_60741' => 'lsa', 'Manes.02G076200' => 'mes', 'Manes.09G005800' => 'mes', 'Mapoly0040s0139' => 'mpo', 'Mapoly0132s0012' => 'mpo', 'MBI11_g24566_MAGBIO' => 'mbi', 'MBI18_g01867_MAGBIO' => 'mbi', 'MBI18_g21798_MAGBIO' => 'mbi', 'MBI18_g21799_MAGBIO' => 'mbi', 'MBI18_g21800_MAGBIO' => 'mbi', 'MCO07G752' => 'mco', 'MCO14G022' => 'mco', 'MD01G1196000' => 'mdo', 'MD03G1000400' => 'mdo', 'MD05G1034800' => 'mdo', 'MD06G1107900' => 'mdo', 'MD07G1262800' => 'mdo', 'MD09G1264300' => 'mdo', 'MD09G1264400' => 'mdo', 'MD15G1255900' => 'mdo', 'MD15G1433500' => 'mdo', 'MD17G1256800' => 'mdo', 'MD17G1258800' => 'mdo', 'MD17G1259600' => 'mdo', 'MD17G1259800' => 'mdo', 'MD17G1260100' => 'mdo', 'Medtr1g101620' => 'mtr', 'Medtr6g027620' => 'mtr', 'MELO3C005366.2' => 'cme', 'MELO3C020199.2' => 'cme', 'Migut.D01299' => 'egut', 'Migut.J00558' => 'egut', 'Migut.J00692' => 'egut', 'Migut.L01675' => 'egut', 'MSTRG.26714' => 'ama', 'MSTRG.4620' => 'ama', 'Nitab4.5_0000203g0010' => 'nta', 'Nitab4.5_0000669g0060' => 'nta', 'Nitab4.5_0001206g0010' => 'nta', 'Nitab4.5_0001206g0020' => 'nta', 'Nitab4.5_0003197g0040' => 'nta', 'Nitab4.5_0004484g0010' => 'nta', 'Nitab4.5_0004729g0010' => 'nta', 'Nitab4.5_0004729g0020' => 'nta', 'Nitab4.5_0008025g0020' => 'nta', 'Nn7g38289' => 'nnu', 'Nn8g40729' => 'nnu', 'Oeu001345.1' => 'oeu', 'Oeu006731.1' => 'oeu', 'Oeu006734.3' => 'oeu', 'Oeu022370.1' => 'oeu', 'Oeu023509.1' => 'oeu', 'Os03g0111700' => 'osa', 'Os03g0335600' => 'osa', 'Os03g0694900' => 'osa', 'Os07g0163500' => 'osa', 'Os10g0506200' => 'osa', 'Peaxi162Scf00057g02721' => 'pax', 'Peaxi162Scf00057g02722' => 'pax', 'Peaxi162Scf00057g02723' => 'pax', 'Peaxi162Scf00079g00089' => 'pax', 'Peaxi162Scf00169g00036' => 'pax', 'Peaxi162Scf00182g00085' => 'pax', 'Peaxi162Scf00182g00086' => 'pax', 'Peaxi162Scf00254g00012' => 'pax', 'Peaxi162Scf00597g00719' => 'pax', 'PGR004G0453' => 'pgr', 'PGR031G0644' => 'pgr', 'PGR031G2005' => 'pgr', 'PGR031G3093' => 'pgr', 'PGR031G3244' => 'pgr', 'PGR031G3606' => 'pgr', 'Phvul.004G073700' => 'pvu', 'Phvul.007G066400' => 'pvu', 'Potri.004G090666' => 'ptr', 'Potri.004G090732' => 'ptr', 'Potri.005G087850' => 'ptr', 'Potri.007G004100' => 'ptr', 'Potri.017G124500' => 'ptr', 'Pp3c12_13790' => 'ppa', 'Pp3c1_36010' => 'ppa', 'Pp3c2_9830' => 'ppa', 'PRCOL_00006335' => 'pco', 'PRCOL_00006948' => 'pco', 'Prupe.1G576900' => 'ppe', 'Prupe.2G289400' => 'ppe', 'Prupe.3G161900' => 'ppe', 'Prupe.3G162000' => 'ppe', 'Psat1g089800' => 'psa', 'Psat6g201440' => 'psa', 'PSO339G4038' => 'pso', 'PSO384G0294' => 'pso', 'PSO478G1977' => 'pso', 'PSO782G2668' => 'pso', 'PSO832G0335' => 'pso', 'PSO832G4571' => 'pso', 'QL06p044842' => 'qlo', 'QL07p019084' => 'qlo', 'QL09p015520' => 'qlo', 'QL09p048218' => 'qlo', 'QL11p048138' => 'qlo', 'QL11p048141' => 'qlo', 'QL11p048148' => 'qlo', 'RcHm_v2.0_Chr1g0328051' => 'rch', 'RcHm_v2.0_Chr1g0376611' => 'rch', 'RcHm_v2.0_Chr2g0151751' => 'rch', 'RcHm_v2.0_Chr2g0151761' => 'rch', 'RcHm_v2.0_Chr5g0049821' => 'rch', 'RcHm_v2.0_Chr5g0066661' => 'rch', 'RcHm_v2.0_Chr7g0182401' => 'rch', 'RcHm_v2.0_Chr7g0218391' => 'rch', 'RcHm_v2.0_Chr7g0218401' => 'rch', 'RcHm_v2.0_Chr7g0218411' => 'rch', 'RcHm_v2.0_Chr7g0232241' => 'rch', 'RcHm_v2.0_Chr7g0232251' => 'rch', 'RcHm_v2.0_Chr7g0232281' => 'rch', 'RcHm_v2.0_Chr7g0232291' => 'rch', 'RcHm_v2.0_Chr7g0232301' => 'rch', 'Rhsim08G0018500' => 'rsi', 'Sabra07G0003000' => 'sbr', 'Sabra17G0105100' => 'sbr', 'SalBow5G1075' => 'sbo', 'Sc07g0001630' => 'sci', 'Sc14g0006490' => 'sci', 'Sed0004659' => 'sed', 'Sed0009589' => 'sed', 'Sed0018333' => 'sed', 'SEGI_00245' => 'sgi', 'SEGI_04262' => 'sgi', 'SEGI_06790' => 'sgi', 'SEGI_08428' => 'sgi', 'SEGI_11941' => 'sgi', 'SEGI_13833' => 'sgi', 'SEGI_14901' => 'sgi', 'SEGI_20814' => 'sgi', 'SEGI_24849' => 'sgi', 'SEGI_27948' => 'sgi', 'SEGI_33021' => 'sgi', 'SGA_v2.0_scaffold35G14149' => 'sas', 'SGA_v2.0_scaffold40G15632' => 'sas', 'SGA_v2.0_scaffold452G51847' => 'sas', 'SHI25544' => 'shi', 'SHI25545' => 'shi', 'SHI25546' => 'shi', 'SHI25547' => 'shi', 'SHI28861' => 'shi', 'SMO165G0098' => 'smo', 'SMO358G0706' => 'smo', 'Solyc09g007540.3' => 'sly', 'Solyc12g019100.2' => 'sly', 'Solyc12g019110.3' => 'sly', 'Sopen09g002410' => 'spe', 'Sopen12g009300' => 'spe', 'Sp1g12970' => 'spa', 'Sp6g27440' => 'spa', 'TAR375G1057' => 'tar', 'TAR375G1109' => 'tar', 'TAR375G1141' => 'tar', 'TAR623G1183' => 'tar', 'TAR629G1395' => 'tar', 'THA.LOC104805109' => 'tha', 'THA.LOC104808369' => 'tha', 'THA.LOC104824111' => 'tha', 'THA.LOC104827192' => 'tha', 'Thecc.04G116700' => 'tca', 'Thecc.07G159900' => 'tca', 'Thecc.09G180600' => 'tca', 'Thhalv10006628m.g' => 'esa', 'Thhalv10006653m.g' => 'esa', 'Thhalv10012577m.g' => 'esa', 'TPR.G17429' => 'tpr', 'TPR.G34728' => 'tpr', 'TPR.G35631' => 'tpr', 'TWI15G0272' => 'twi', 'TWI74G1301' => 'twi', 'TWI81G0741' => 'twi', 'unitig_744.g24676' => 'ugi', 'unitig_749.g13792' => 'ugi', 'vmacro06728' => 'vma', 'vmacro06729' => 'vma', 'vmacro18535' => 'vma', 'VMungo0464G0907' => 'vmu', 'VMungo0464G1730' => 'vmu', 'VMungo0720G1540' => 'vmu', 'Zm00001eb104290' => 'zma', 'Zm00001eb117220' => 'zma', 'Zm00001eb415210' => 'zma', 'Zm00001eb415220' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001392', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001392' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001392', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '451', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001392' ) ), 'genes' => array( 'A06p10670' => 'bna', 'A07p13380' => 'bna', 'A07p13390' => 'bna', 'A08p27330' => 'bna', 'A08p31910' => 'bna', 'A09p61990' => 'bna', 'A10p22510' => 'bna', 'Aa31LG11G12960' => 'aar', 'Aa31LG1G460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3855' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4580' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3387' => 'aag', 'Actinidia23793' => 'ach', 'Actinidia25176' => 'ach', 'Actinidia28813' => 'ach', 'Actinidia28814' => 'ach', 'Actinidia28815' => 'ach', 'Actinidia32900' => 'ach', 'Actinidia32901' => 'ach', 'Actinidia32902' => 'ach', 'Actinidia34075' => 'ach', 'Actinidia34544' => 'ach', 'Actinidia35731' => 'ach', 'Ah.03g134560' => 'amhyb', 'Ah.12g060150' => 'amhyb', 'AL1G26580' => 'aly', 'AL1G38320' => 'aly', 'AL3G41580' => 'aly', 'AL6G27720' => 'aly', 'Aqoxy2G00612' => 'aox', 'Aqoxy2G00887' => 'aox', 'Aqoxy2G00888' => 'aox', 'Aqoxy2G00889' => 'aox', 'Aqoxy2G00890' => 'aox', 'Aqoxy2G03097' => 'aox', 'Aqoxy7G00465' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0T11RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K04UQ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R98RGQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLS2Y4' => 'arhy', 'AT1G14610' => 'ath', 'AT1G27160' => 'ath', 'AT5G16715' => 'ath', 'ATR0697G119' => 'atr', 'ATR0782G056' => 'atr', 'Atru.chr1.1875' => 'acertr', 'AUR62002803' => 'cqu', 'AUR62014110' => 'cqu', 'AUR62014114' => 'cqu', 'AUR62018211' => 'cqu', 'AUR62038698' => 'cqu', 'AUR62038699' => 'cqu', 'BcaB02g06531' => 'bca', 'BcaB03g13091' => 'bca', 'BcaB03g14115' => 'bca', 'BcaB03g14116' => 'bca', 'BcaC04g18858' => 'bca', 'BcaC04g18859' => 'bca', 'BcaC05g25377' => 'bca', 'BcaC06g34238' => 'bca', 'BcaC06g35085' => 'bca', 'BcaC06g35086' => 'bca', 'BcaC07g38749' => 'bca', 'BcaC07g41556' => 'bca', 'BcaNung05660' => 'bca', 'BolC3t19544H' => 'bol', 'BolC5t30002H' => 'bol', 'BolC7t42520H' => 'bol', 'BolC8t49300H' => 'bol', 'BolC8t52110H' => 'bol', 'BolC9t58869H' => 'bol', 'BraA06t24247Z' => 'bra', 'BraA07t29110Z' => 'bra', 'BraA07t29111Z' => 'bra', 'BraA08t34676Z' => 'bra', 'BraA08t35113Z' => 'bra', 'BraA09t41562Z' => 'bra', 'BraA10t44310Z' => 'bra', 'C05p12580' => 'bna', 'C07p20010' => 'bna', 'C08p16790' => 'bna', 'C08p45570' => 'bna', 'C09p60360' => 'bna', 'CAN.G1091.5' => 'can', 'CAN.G207.6' => 'can', 'CAN.G703.8' => 'can', 'CANSAT56G1922' => 'cansat', 'CANSAT56G2795' => 'cansat', 'CANSAT71G0007' => 'cansat', 'CARHR015110' => 'chi', 'CARHR024700' => 'chi', 'CARHR024710' => 'chi', 'CARHR144600' => 'chi', 'CARHR196470' => 'chi', 'CARHR260940' => 'chi', 'Carub.0001s1437' => 'cru', 'Carub.0001s3391' => 'cru', 'Carub.0005s0101' => 'cru', 'Carub.0006s1493' => 'cru', 'Ca_10801_v3' => 'car', 'Ca_25679_v3' => 'car', 'CBR_g31285' => 'cbr', 'CBR_g4483' => 'cbr', 'CBR_g88870' => 'cbr', 'Cc06_g03770' => 'ccan', 'CDE08G1587' => 'cde', 'CDE10G1341' => 'cde', 'Cfa008272' => 'cfa', 'Cfa017719' => 'cfa', 'Cfa021716' => 'cfa', 'Ciclev10004208m.g' => 'ccl', 'Ciclev10010998m.g' => 'ccl', 'CiPaw.04G068200' => 'cil', 'CiPaw.09G167000' => 'cil', 'CiPaw.09G167100' => 'cil', 'ClCG01G005670' => 'cla', 'ClCG01G005680' => 'cla', 'ClCG05G011510' => 'cla', 'COL.COLO4_04102' => 'col', 'COL.COLO4_09038' => 'col', 'COL.COLO4_09039' => 'col', 'COL.COLO4_25471' => 'col', 'COL.COLO4_31125' => 'col', 'Cpa.g.sc116.46' => 'cpa', 'Cpa.g.sc2.74' => 'cpa', 'Cre07.g350500' => 'cre', 'Cre12.g537100' => 'cre', 'CsaV3_3G020830' => 'csa', 'CsaV3_5G005900' => 'csa', 'CSS0004873' => 'camsi', 'CSS0005968' => 'camsi', 'CSS0006913' => 'camsi', 'CSS0026523' => 'camsi', 'CSS0030571' => 'camsi', 'DCAR_003434' => 'dca', 'DCAR_020225' => 'dca', 'Dinv19030' => 'din', 'Dinv31233' => 'din', 'Dinv36391' => 'din', 'Duzib133G1570' => 'dzi', 'Duzib170G0790' => 'dzi', 'ECA240G1446' => 'eca', 'ECA240G2105' => 'eca', 'ECA246G3910' => 'eca', 'EL10Ac2g03165' => 'bvu', 'EL10Ac5g11700' => 'bvu', 'EL10Ac8g19565' => 'bvu', 'Eucgr.E01106' => 'egr', 'Eucgr.F02848' => 'egr', 'Eucgr.F04425' => 'egr', 'FAN01G1271' => 'fan', 'FAN01G1312' => 'fan', 'FAN03G0802' => 'fan', 'FAN03G1076' => 'fan', 'FAN03G1326' => 'fan', 'FAN03G1857' => 'fan', 'FAN06G0336' => 'fan', 'FAN06G0463' => 'fan', 'FAN06G1244' => 'fan', 'FAN06G3412' => 'fan', 'FAN06G3456' => 'fan', 'FAN10G1869' => 'fan', 'FAN10G3015' => 'fan', 'FAN13G1017' => 'fan', 'FAN18G4114' => 'fan', 'FAN23G3091' => 'fan', 'FvH4_5g33250' => 'fve', 'FvH4_7g01700' => 'fve', 'FvH4_7g04130' => 'fve', 'FvH4_7g28901' => 'fve', 'FvH4_7g28940' => 'fve', 'Glyma.05G089050' => 'gma', 'Glyma.10G239500' => 'gma', 'Glyma.17G186800' => 'gma', 'Glyma.17G186900' => 'gma', 'Glyma.17G187000' => 'gma', 'Glyma.18G051300' => 'gma', 'Glyma.20G155000' => 'gma', 'Gohir.A01G231880' => 'ghi', 'Gohir.A08G018000' => 'ghi', 'Gohir.A08G253800' => 'ghi', 'Gohir.A10G243050' => 'ghi', 'Gohir.A12G276975' => 'ghi', 'Gohir.A12G277201' => 'ghi', 'Gohir.D01G140701' => 'ghi', 'Gohir.D01G222000' => 'ghi', 'Gohir.D03G178350' => 'ghi', 'Gohir.D07G000261' => 'ghi', 'Gohir.D07G000800' => 'ghi', 'Gohir.D08G028600' => 'ghi', 'Gohir.D08G275314' => 'ghi', 'Gohir.D09G073701' => 'ghi', 'Gohir.D10G255000' => 'ghi', 'Gohir.D11G349100' => 'ghi', 'Gohir.D11G349400' => 'ghi', 'Gohir.D12G131400' => 'ghi', 'Gohir.D12G141700' => 'ghi', 'Gorai.002G000100' => 'gra', 'Gorai.002G172800' => 'gra', 'Gorai.002G268700' => 'gra', 'Gorai.004G025700' => 'gra', 'Gorai.005G269400' => 'gra', 'Gorai.005G269600' => 'gra', 'Gorai.005G269800' => 'gra', 'Gorai.006G101900' => 'gra', 'Gorai.006G274700' => 'gra', 'Gorai.007G000600' => 'gra', 'Gorai.007G379600' => 'gra', 'Gorai.008G142700' => 'gra', 'Gorai.008G153100' => 'gra', 'Gorai.008G298700' => 'gra', 'Gorai.008G298900' => 'gra', 'Gorai.011G000300' => 'gra', 'Gorai.011G296000' => 'gra', 'Gorai.N015700' => 'gra', 'GSVIVG01010632001' => 'vvi', 'GSVIVG01010703001' => 'vvi', 'GSVIVG01027222001' => 'vvi', 'GSVIVG01030775001' => 'vvi', 'GSVIVG01030776001' => 'vvi', 'HanXRQChr03g0071441' => 'han', 'HanXRQChr07g0197731' => 'han', 'HanXRQChr10g0283681' => 'han', 'HanXRQChr14g0461381' => 'han', 'Haze_10572' => 'cav', 'Haze_13765' => 'cav', 'Haze_13766' => 'cav', 'Haze_13767' => 'cav', 'Haze_20419' => 'cav', 'Haze_26620' => 'cav', 'Hma1.2p1_0524F.1_g172340' => 'hma', 'Hma1.2p1_0524F.1_g172350' => 'hma', 'Hma1.2p1_0524F.1_g172360' => 'hma', 'Hma1.2p1_0524F.1_g172370' => 'hma', 'Hma1.2p1_1840F.1_g304930' => 'hma', 'Hma1.2p1_1840F.1_g304940' => 'hma', 'HPP92_000859' => 'vpl', 'HPP92_000860' => 'vpl', 'HPP92_000864' => 'vpl', 'HPP92_001073' => 'vpl', 'HPP92_001074' => 'vpl', 'Hund13115' => 'sun', 'Hund20713' => 'sun', 'Hund20715' => 'sun', 'Lalb_Chr12g0210011' => 'lal', 'Lalb_Chr14g0364821' => 'lal', 'Lj2g0008629' => 'lja', 'Lj4A264G50' => 'lonja', 'Lj9C302G3' => 'lonja', 'LjContig00238g0000416' => 'lja', 'Lsat_1_v5_gn_0_3280' => 'lsa', 'Lsat_1_v5_gn_1_100720' => 'lsa', 'Lsat_1_v5_gn_1_100761' => 'lsa', 'Lsat_1_v5_gn_3_65141' => 'lsa', 'Lsat_1_v5_gn_4_121141' => 'lsa', 'Lsat_1_v5_gn_4_173780' => 'lsa', 'Lsat_1_v5_gn_5_24801' => 'lsa', 'Lsat_1_v5_gn_5_61861' => 'lsa', 'Lsat_1_v5_gn_7_60700' => 'lsa', 'Lsat_1_v5_gn_7_60720' => 'lsa', 'Lsat_1_v5_gn_7_60741' => 'lsa', 'Manes.02G076200' => 'mes', 'Manes.09G005800' => 'mes', 'Mapoly0040s0139' => 'mpo', 'Mapoly0132s0012' => 'mpo', 'MBI11_g24566_MAGBIO' => 'mbi', 'MBI18_g01867_MAGBIO' => 'mbi', 'MBI18_g21798_MAGBIO' => 'mbi', 'MBI18_g21799_MAGBIO' => 'mbi', 'MBI18_g21800_MAGBIO' => 'mbi', 'MCO07G752' => 'mco', 'MCO14G022' => 'mco', 'MD01G1196000' => 'mdo', 'MD03G1000400' => 'mdo', 'MD05G1034800' => 'mdo', 'MD06G1107900' => 'mdo', 'MD07G1262800' => 'mdo', 'MD09G1264300' => 'mdo', 'MD09G1264400' => 'mdo', 'MD15G1255900' => 'mdo', 'MD15G1433500' => 'mdo', 'MD17G1256800' => 'mdo', 'MD17G1258800' => 'mdo', 'MD17G1259600' => 'mdo', 'MD17G1259800' => 'mdo', 'MD17G1260100' => 'mdo', 'Medtr1g101620' => 'mtr', 'Medtr6g027620' => 'mtr', 'MELO3C005366.2' => 'cme', 'MELO3C020199.2' => 'cme', 'Migut.D01299' => 'egut', 'Migut.J00558' => 'egut', 'Migut.J00692' => 'egut', 'Migut.L01675' => 'egut', 'MSTRG.26714' => 'ama', 'MSTRG.4620' => 'ama', 'Nitab4.5_0000203g0010' => 'nta', 'Nitab4.5_0000669g0060' => 'nta', 'Nitab4.5_0001206g0010' => 'nta', 'Nitab4.5_0001206g0020' => 'nta', 'Nitab4.5_0003197g0040' => 'nta', 'Nitab4.5_0004484g0010' => 'nta', 'Nitab4.5_0004729g0010' => 'nta', 'Nitab4.5_0004729g0020' => 'nta', 'Nitab4.5_0008025g0020' => 'nta', 'Nn7g38289' => 'nnu', 'Nn8g40729' => 'nnu', 'Oeu001345.1' => 'oeu', 'Oeu006731.1' => 'oeu', 'Oeu006734.3' => 'oeu', 'Oeu022370.1' => 'oeu', 'Oeu023509.1' => 'oeu', 'Os03g0111700' => 'osa', 'Os03g0335600' => 'osa', 'Os03g0694900' => 'osa', 'Os07g0163500' => 'osa', 'Os10g0506200' => 'osa', 'Peaxi162Scf00057g02721' => 'pax', 'Peaxi162Scf00057g02722' => 'pax', 'Peaxi162Scf00057g02723' => 'pax', 'Peaxi162Scf00079g00089' => 'pax', 'Peaxi162Scf00169g00036' => 'pax', 'Peaxi162Scf00182g00085' => 'pax', 'Peaxi162Scf00182g00086' => 'pax', 'Peaxi162Scf00254g00012' => 'pax', 'Peaxi162Scf00597g00719' => 'pax', 'PGR004G0453' => 'pgr', 'PGR031G0644' => 'pgr', 'PGR031G2005' => 'pgr', 'PGR031G3093' => 'pgr', 'PGR031G3244' => 'pgr', 'PGR031G3606' => 'pgr', 'Phvul.004G073700' => 'pvu', 'Phvul.007G066400' => 'pvu', 'Potri.004G090666' => 'ptr', 'Potri.004G090732' => 'ptr', 'Potri.005G087850' => 'ptr', 'Potri.007G004100' => 'ptr', 'Potri.017G124500' => 'ptr', 'Pp3c12_13790' => 'ppa', 'Pp3c1_36010' => 'ppa', 'Pp3c2_9830' => 'ppa', 'PRCOL_00006335' => 'pco', 'PRCOL_00006948' => 'pco', 'Prupe.1G576900' => 'ppe', 'Prupe.2G289400' => 'ppe', 'Prupe.3G161900' => 'ppe', 'Prupe.3G162000' => 'ppe', 'Psat1g089800' => 'psa', 'Psat6g201440' => 'psa', 'PSO339G4038' => 'pso', 'PSO384G0294' => 'pso', 'PSO478G1977' => 'pso', 'PSO782G2668' => 'pso', 'PSO832G0335' => 'pso', 'PSO832G4571' => 'pso', 'QL06p044842' => 'qlo', 'QL07p019084' => 'qlo', 'QL09p015520' => 'qlo', 'QL09p048218' => 'qlo', 'QL11p048138' => 'qlo', 'QL11p048141' => 'qlo', 'QL11p048148' => 'qlo', 'RcHm_v2.0_Chr1g0328051' => 'rch', 'RcHm_v2.0_Chr1g0376611' => 'rch', 'RcHm_v2.0_Chr2g0151751' => 'rch', 'RcHm_v2.0_Chr2g0151761' => 'rch', 'RcHm_v2.0_Chr5g0049821' => 'rch', 'RcHm_v2.0_Chr5g0066661' => 'rch', 'RcHm_v2.0_Chr7g0182401' => 'rch', 'RcHm_v2.0_Chr7g0218391' => 'rch', 'RcHm_v2.0_Chr7g0218401' => 'rch', 'RcHm_v2.0_Chr7g0218411' => 'rch', 'RcHm_v2.0_Chr7g0232241' => 'rch', 'RcHm_v2.0_Chr7g0232251' => 'rch', 'RcHm_v2.0_Chr7g0232281' => 'rch', 'RcHm_v2.0_Chr7g0232291' => 'rch', 'RcHm_v2.0_Chr7g0232301' => 'rch', 'Rhsim08G0018500' => 'rsi', 'Sabra07G0003000' => 'sbr', 'Sabra17G0105100' => 'sbr', 'SalBow5G1075' => 'sbo', 'Sc07g0001630' => 'sci', 'Sc14g0006490' => 'sci', 'Sed0004659' => 'sed', 'Sed0009589' => 'sed', 'Sed0018333' => 'sed', 'SEGI_00245' => 'sgi', 'SEGI_04262' => 'sgi', 'SEGI_06790' => 'sgi', 'SEGI_08428' => 'sgi', 'SEGI_11941' => 'sgi', 'SEGI_13833' => 'sgi', 'SEGI_14901' => 'sgi', 'SEGI_20814' => 'sgi', 'SEGI_24849' => 'sgi', 'SEGI_27948' => 'sgi', 'SEGI_33021' => 'sgi', 'SGA_v2.0_scaffold35G14149' => 'sas', 'SGA_v2.0_scaffold40G15632' => 'sas', 'SGA_v2.0_scaffold452G51847' => 'sas', 'SHI25544' => 'shi', 'SHI25545' => 'shi', 'SHI25546' => 'shi', 'SHI25547' => 'shi', 'SHI28861' => 'shi', 'SMO165G0098' => 'smo', 'SMO358G0706' => 'smo', 'Solyc09g007540.3' => 'sly', 'Solyc12g019100.2' => 'sly', 'Solyc12g019110.3' => 'sly', 'Sopen09g002410' => 'spe', 'Sopen12g009300' => 'spe', 'Sp1g12970' => 'spa', 'Sp6g27440' => 'spa', 'TAR375G1057' => 'tar', 'TAR375G1109' => 'tar', 'TAR375G1141' => 'tar', 'TAR623G1183' => 'tar', 'TAR629G1395' => 'tar', 'THA.LOC104805109' => 'tha', 'THA.LOC104808369' => 'tha', 'THA.LOC104824111' => 'tha', 'THA.LOC104827192' => 'tha', 'Thecc.04G116700' => 'tca', 'Thecc.07G159900' => 'tca', 'Thecc.09G180600' => 'tca', 'Thhalv10006628m.g' => 'esa', 'Thhalv10006653m.g' => 'esa', 'Thhalv10012577m.g' => 'esa', 'TPR.G17429' => 'tpr', 'TPR.G34728' => 'tpr', 'TPR.G35631' => 'tpr', 'TWI15G0272' => 'twi', 'TWI74G1301' => 'twi', 'TWI81G0741' => 'twi', 'unitig_744.g24676' => 'ugi', 'unitig_749.g13792' => 'ugi', 'vmacro06728' => 'vma', 'vmacro06729' => 'vma', 'vmacro18535' => 'vma', 'VMungo0464G0907' => 'vmu', 'VMungo0464G1730' => 'vmu', 'VMungo0720G1540' => 'vmu', 'Zm00001eb104290' => 'zma', 'Zm00001eb117220' => 'zma', 'Zm00001eb415210' => 'zma', 'Zm00001eb415220' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001392' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001392' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001392' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001392' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001392', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '451', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A06p10670' => 'bna', 'A07p13380' => 'bna', 'A07p13390' => 'bna', 'A08p27330' => 'bna', 'A08p31910' => 'bna', 'A09p61990' => 'bna', 'A10p22510' => 'bna', 'Aa31LG11G12960' => 'aar', 'Aa31LG1G460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3855' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4580' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3387' => 'aag', 'Actinidia23793' => 'ach', 'Actinidia25176' => 'ach', 'Actinidia28813' => 'ach', 'Actinidia28814' => 'ach', 'Actinidia28815' => 'ach', 'Actinidia32900' => 'ach', 'Actinidia32901' => 'ach', 'Actinidia32902' => 'ach', 'Actinidia34075' => 'ach', 'Actinidia34544' => 'ach', 'Actinidia35731' => 'ach', 'Ah.03g134560' => 'amhyb', 'Ah.12g060150' => 'amhyb', 'AL1G26580' => 'aly', 'AL1G38320' => 'aly', 'AL3G41580' => 'aly', 'AL6G27720' => 'aly', 'Aqoxy2G00612' => 'aox', 'Aqoxy2G00887' => 'aox', 'Aqoxy2G00888' => 'aox', 'Aqoxy2G00889' => 'aox', 'Aqoxy2G00890' => 'aox', 'Aqoxy2G03097' => 'aox', 'Aqoxy7G00465' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0T11RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K04UQ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R98RGQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLS2Y4' => 'arhy', 'AT1G14610' => 'ath', 'AT1G27160' => 'ath', 'AT5G16715' => 'ath', 'ATR0697G119' => 'atr', 'ATR0782G056' => 'atr', 'Atru.chr1.1875' => 'acertr', 'AUR62002803' => 'cqu', 'AUR62014110' => 'cqu', 'AUR62014114' => 'cqu', 'AUR62018211' => 'cqu', 'AUR62038698' => 'cqu', 'AUR62038699' => 'cqu', 'BcaB02g06531' => 'bca', 'BcaB03g13091' => 'bca', 'BcaB03g14115' => 'bca', 'BcaB03g14116' => 'bca', 'BcaC04g18858' => 'bca', 'BcaC04g18859' => 'bca', 'BcaC05g25377' => 'bca', 'BcaC06g34238' => 'bca', 'BcaC06g35085' => 'bca', 'BcaC06g35086' => 'bca', 'BcaC07g38749' => 'bca', 'BcaC07g41556' => 'bca', 'BcaNung05660' => 'bca', 'BolC3t19544H' => 'bol', 'BolC5t30002H' => 'bol', 'BolC7t42520H' => 'bol', 'BolC8t49300H' => 'bol', 'BolC8t52110H' => 'bol', 'BolC9t58869H' => 'bol', 'BraA06t24247Z' => 'bra', 'BraA07t29110Z' => 'bra', 'BraA07t29111Z' => 'bra', 'BraA08t34676Z' => 'bra', 'BraA08t35113Z' => 'bra', 'BraA09t41562Z' => 'bra', 'BraA10t44310Z' => 'bra', 'C05p12580' => 'bna', 'C07p20010' => 'bna', 'C08p16790' => 'bna', 'C08p45570' => 'bna', 'C09p60360' => 'bna', 'CAN.G1091.5' => 'can', 'CAN.G207.6' => 'can', 'CAN.G703.8' => 'can', 'CANSAT56G1922' => 'cansat', 'CANSAT56G2795' => 'cansat', 'CANSAT71G0007' => 'cansat', 'CARHR015110' => 'chi', 'CARHR024700' => 'chi', 'CARHR024710' => 'chi', 'CARHR144600' => 'chi', 'CARHR196470' => 'chi', 'CARHR260940' => 'chi', 'Carub.0001s1437' => 'cru', 'Carub.0001s3391' => 'cru', 'Carub.0005s0101' => 'cru', 'Carub.0006s1493' => 'cru', 'Ca_10801_v3' => 'car', 'Ca_25679_v3' => 'car', 'CBR_g31285' => 'cbr', 'CBR_g4483' => 'cbr', 'CBR_g88870' => 'cbr', 'Cc06_g03770' => 'ccan', 'CDE08G1587' => 'cde', 'CDE10G1341' => 'cde', 'Cfa008272' => 'cfa', 'Cfa017719' => 'cfa', 'Cfa021716' => 'cfa', 'Ciclev10004208m.g' => 'ccl', 'Ciclev10010998m.g' => 'ccl', 'CiPaw.04G068200' => 'cil', 'CiPaw.09G167000' => 'cil', 'CiPaw.09G167100' => 'cil', 'ClCG01G005670' => 'cla', 'ClCG01G005680' => 'cla', 'ClCG05G011510' => 'cla', 'COL.COLO4_04102' => 'col', 'COL.COLO4_09038' => 'col', 'COL.COLO4_09039' => 'col', 'COL.COLO4_25471' => 'col', 'COL.COLO4_31125' => 'col', 'Cpa.g.sc116.46' => 'cpa', 'Cpa.g.sc2.74' => 'cpa', 'Cre07.g350500' => 'cre', 'Cre12.g537100' => 'cre', 'CsaV3_3G020830' => 'csa', 'CsaV3_5G005900' => 'csa', 'CSS0004873' => 'camsi', 'CSS0005968' => 'camsi', 'CSS0006913' => 'camsi', 'CSS0026523' => 'camsi', 'CSS0030571' => 'camsi', 'DCAR_003434' => 'dca', 'DCAR_020225' => 'dca', 'Dinv19030' => 'din', 'Dinv31233' => 'din', 'Dinv36391' => 'din', 'Duzib133G1570' => 'dzi', 'Duzib170G0790' => 'dzi', 'ECA240G1446' => 'eca', 'ECA240G2105' => 'eca', 'ECA246G3910' => 'eca', 'EL10Ac2g03165' => 'bvu', 'EL10Ac5g11700' => 'bvu', 'EL10Ac8g19565' => 'bvu', 'Eucgr.E01106' => 'egr', 'Eucgr.F02848' => 'egr', 'Eucgr.F04425' => 'egr', 'FAN01G1271' => 'fan', 'FAN01G1312' => 'fan', 'FAN03G0802' => 'fan', 'FAN03G1076' => 'fan', 'FAN03G1326' => 'fan', 'FAN03G1857' => 'fan', 'FAN06G0336' => 'fan', 'FAN06G0463' => 'fan', 'FAN06G1244' => 'fan', 'FAN06G3412' => 'fan', 'FAN06G3456' => 'fan', 'FAN10G1869' => 'fan', 'FAN10G3015' => 'fan', 'FAN13G1017' => 'fan', 'FAN18G4114' => 'fan', 'FAN23G3091' => 'fan', 'FvH4_5g33250' => 'fve', 'FvH4_7g01700' => 'fve', 'FvH4_7g04130' => 'fve', 'FvH4_7g28901' => 'fve', 'FvH4_7g28940' => 'fve', 'Glyma.05G089050' => 'gma', 'Glyma.10G239500' => 'gma', 'Glyma.17G186800' => 'gma', 'Glyma.17G186900' => 'gma', 'Glyma.17G187000' => 'gma', 'Glyma.18G051300' => 'gma', 'Glyma.20G155000' => 'gma', 'Gohir.A01G231880' => 'ghi', 'Gohir.A08G018000' => 'ghi', 'Gohir.A08G253800' => 'ghi', 'Gohir.A10G243050' => 'ghi', 'Gohir.A12G276975' => 'ghi', 'Gohir.A12G277201' => 'ghi', 'Gohir.D01G140701' => 'ghi', 'Gohir.D01G222000' => 'ghi', 'Gohir.D03G178350' => 'ghi', 'Gohir.D07G000261' => 'ghi', 'Gohir.D07G000800' => 'ghi', 'Gohir.D08G028600' => 'ghi', 'Gohir.D08G275314' => 'ghi', 'Gohir.D09G073701' => 'ghi', 'Gohir.D10G255000' => 'ghi', 'Gohir.D11G349100' => 'ghi', 'Gohir.D11G349400' => 'ghi', 'Gohir.D12G131400' => 'ghi', 'Gohir.D12G141700' => 'ghi', 'Gorai.002G000100' => 'gra', 'Gorai.002G172800' => 'gra', 'Gorai.002G268700' => 'gra', 'Gorai.004G025700' => 'gra', 'Gorai.005G269400' => 'gra', 'Gorai.005G269600' => 'gra', 'Gorai.005G269800' => 'gra', 'Gorai.006G101900' => 'gra', 'Gorai.006G274700' => 'gra', 'Gorai.007G000600' => 'gra', 'Gorai.007G379600' => 'gra', 'Gorai.008G142700' => 'gra', 'Gorai.008G153100' => 'gra', 'Gorai.008G298700' => 'gra', 'Gorai.008G298900' => 'gra', 'Gorai.011G000300' => 'gra', 'Gorai.011G296000' => 'gra', 'Gorai.N015700' => 'gra', 'GSVIVG01010632001' => 'vvi', 'GSVIVG01010703001' => 'vvi', 'GSVIVG01027222001' => 'vvi', 'GSVIVG01030775001' => 'vvi', 'GSVIVG01030776001' => 'vvi', 'HanXRQChr03g0071441' => 'han', 'HanXRQChr07g0197731' => 'han', 'HanXRQChr10g0283681' => 'han', 'HanXRQChr14g0461381' => 'han', 'Haze_10572' => 'cav', 'Haze_13765' => 'cav', 'Haze_13766' => 'cav', 'Haze_13767' => 'cav', 'Haze_20419' => 'cav', 'Haze_26620' => 'cav', 'Hma1.2p1_0524F.1_g172340' => 'hma', 'Hma1.2p1_0524F.1_g172350' => 'hma', 'Hma1.2p1_0524F.1_g172360' => 'hma', 'Hma1.2p1_0524F.1_g172370' => 'hma', 'Hma1.2p1_1840F.1_g304930' => 'hma', 'Hma1.2p1_1840F.1_g304940' => 'hma', 'HPP92_000859' => 'vpl', 'HPP92_000860' => 'vpl', 'HPP92_000864' => 'vpl', 'HPP92_001073' => 'vpl', 'HPP92_001074' => 'vpl', 'Hund13115' => 'sun', 'Hund20713' => 'sun', 'Hund20715' => 'sun', 'Lalb_Chr12g0210011' => 'lal', 'Lalb_Chr14g0364821' => 'lal', 'Lj2g0008629' => 'lja', 'Lj4A264G50' => 'lonja', 'Lj9C302G3' => 'lonja', 'LjContig00238g0000416' => 'lja', 'Lsat_1_v5_gn_0_3280' => 'lsa', 'Lsat_1_v5_gn_1_100720' => 'lsa', 'Lsat_1_v5_gn_1_100761' => 'lsa', 'Lsat_1_v5_gn_3_65141' => 'lsa', 'Lsat_1_v5_gn_4_121141' => 'lsa', 'Lsat_1_v5_gn_4_173780' => 'lsa', 'Lsat_1_v5_gn_5_24801' => 'lsa', 'Lsat_1_v5_gn_5_61861' => 'lsa', 'Lsat_1_v5_gn_7_60700' => 'lsa', 'Lsat_1_v5_gn_7_60720' => 'lsa', 'Lsat_1_v5_gn_7_60741' => 'lsa', 'Manes.02G076200' => 'mes', 'Manes.09G005800' => 'mes', 'Mapoly0040s0139' => 'mpo', 'Mapoly0132s0012' => 'mpo', 'MBI11_g24566_MAGBIO' => 'mbi', 'MBI18_g01867_MAGBIO' => 'mbi', 'MBI18_g21798_MAGBIO' => 'mbi', 'MBI18_g21799_MAGBIO' => 'mbi', 'MBI18_g21800_MAGBIO' => 'mbi', 'MCO07G752' => 'mco', 'MCO14G022' => 'mco', 'MD01G1196000' => 'mdo', 'MD03G1000400' => 'mdo', 'MD05G1034800' => 'mdo', 'MD06G1107900' => 'mdo', 'MD07G1262800' => 'mdo', 'MD09G1264300' => 'mdo', 'MD09G1264400' => 'mdo', 'MD15G1255900' => 'mdo', 'MD15G1433500' => 'mdo', 'MD17G1256800' => 'mdo', 'MD17G1258800' => 'mdo', 'MD17G1259600' => 'mdo', 'MD17G1259800' => 'mdo', 'MD17G1260100' => 'mdo', 'Medtr1g101620' => 'mtr', 'Medtr6g027620' => 'mtr', 'MELO3C005366.2' => 'cme', 'MELO3C020199.2' => 'cme', 'Migut.D01299' => 'egut', 'Migut.J00558' => 'egut', 'Migut.J00692' => 'egut', 'Migut.L01675' => 'egut', 'MSTRG.26714' => 'ama', 'MSTRG.4620' => 'ama', 'Nitab4.5_0000203g0010' => 'nta', 'Nitab4.5_0000669g0060' => 'nta', 'Nitab4.5_0001206g0010' => 'nta', 'Nitab4.5_0001206g0020' => 'nta', 'Nitab4.5_0003197g0040' => 'nta', 'Nitab4.5_0004484g0010' => 'nta', 'Nitab4.5_0004729g0010' => 'nta', 'Nitab4.5_0004729g0020' => 'nta', 'Nitab4.5_0008025g0020' => 'nta', 'Nn7g38289' => 'nnu', 'Nn8g40729' => 'nnu', 'Oeu001345.1' => 'oeu', 'Oeu006731.1' => 'oeu', 'Oeu006734.3' => 'oeu', 'Oeu022370.1' => 'oeu', 'Oeu023509.1' => 'oeu', 'Os03g0111700' => 'osa', 'Os03g0335600' => 'osa', 'Os03g0694900' => 'osa', 'Os07g0163500' => 'osa', 'Os10g0506200' => 'osa', 'Peaxi162Scf00057g02721' => 'pax', 'Peaxi162Scf00057g02722' => 'pax', 'Peaxi162Scf00057g02723' => 'pax', 'Peaxi162Scf00079g00089' => 'pax', 'Peaxi162Scf00169g00036' => 'pax', 'Peaxi162Scf00182g00085' => 'pax', 'Peaxi162Scf00182g00086' => 'pax', 'Peaxi162Scf00254g00012' => 'pax', 'Peaxi162Scf00597g00719' => 'pax', 'PGR004G0453' => 'pgr', 'PGR031G0644' => 'pgr', 'PGR031G2005' => 'pgr', 'PGR031G3093' => 'pgr', 'PGR031G3244' => 'pgr', 'PGR031G3606' => 'pgr', 'Phvul.004G073700' => 'pvu', 'Phvul.007G066400' => 'pvu', 'Potri.004G090666' => 'ptr', 'Potri.004G090732' => 'ptr', 'Potri.005G087850' => 'ptr', 'Potri.007G004100' => 'ptr', 'Potri.017G124500' => 'ptr', 'Pp3c12_13790' => 'ppa', 'Pp3c1_36010' => 'ppa', 'Pp3c2_9830' => 'ppa', 'PRCOL_00006335' => 'pco', 'PRCOL_00006948' => 'pco', 'Prupe.1G576900' => 'ppe', 'Prupe.2G289400' => 'ppe', 'Prupe.3G161900' => 'ppe', 'Prupe.3G162000' => 'ppe', 'Psat1g089800' => 'psa', 'Psat6g201440' => 'psa', 'PSO339G4038' => 'pso', 'PSO384G0294' => 'pso', 'PSO478G1977' => 'pso', 'PSO782G2668' => 'pso', 'PSO832G0335' => 'pso', 'PSO832G4571' => 'pso', 'QL06p044842' => 'qlo', 'QL07p019084' => 'qlo', 'QL09p015520' => 'qlo', 'QL09p048218' => 'qlo', 'QL11p048138' => 'qlo', 'QL11p048141' => 'qlo', 'QL11p048148' => 'qlo', 'RcHm_v2.0_Chr1g0328051' => 'rch', 'RcHm_v2.0_Chr1g0376611' => 'rch', 'RcHm_v2.0_Chr2g0151751' => 'rch', 'RcHm_v2.0_Chr2g0151761' => 'rch', 'RcHm_v2.0_Chr5g0049821' => 'rch', 'RcHm_v2.0_Chr5g0066661' => 'rch', 'RcHm_v2.0_Chr7g0182401' => 'rch', 'RcHm_v2.0_Chr7g0218391' => 'rch', 'RcHm_v2.0_Chr7g0218401' => 'rch', 'RcHm_v2.0_Chr7g0218411' => 'rch', 'RcHm_v2.0_Chr7g0232241' => 'rch', 'RcHm_v2.0_Chr7g0232251' => 'rch', 'RcHm_v2.0_Chr7g0232281' => 'rch', 'RcHm_v2.0_Chr7g0232291' => 'rch', 'RcHm_v2.0_Chr7g0232301' => 'rch', 'Rhsim08G0018500' => 'rsi', 'Sabra07G0003000' => 'sbr', 'Sabra17G0105100' => 'sbr', 'SalBow5G1075' => 'sbo', 'Sc07g0001630' => 'sci', 'Sc14g0006490' => 'sci', 'Sed0004659' => 'sed', 'Sed0009589' => 'sed', 'Sed0018333' => 'sed', 'SEGI_00245' => 'sgi', 'SEGI_04262' => 'sgi', 'SEGI_06790' => 'sgi', 'SEGI_08428' => 'sgi', 'SEGI_11941' => 'sgi', 'SEGI_13833' => 'sgi', 'SEGI_14901' => 'sgi', 'SEGI_20814' => 'sgi', 'SEGI_24849' => 'sgi', 'SEGI_27948' => 'sgi', 'SEGI_33021' => 'sgi', 'SGA_v2.0_scaffold35G14149' => 'sas', 'SGA_v2.0_scaffold40G15632' => 'sas', 'SGA_v2.0_scaffold452G51847' => 'sas', 'SHI25544' => 'shi', 'SHI25545' => 'shi', 'SHI25546' => 'shi', 'SHI25547' => 'shi', 'SHI28861' => 'shi', 'SMO165G0098' => 'smo', 'SMO358G0706' => 'smo', 'Solyc09g007540.3' => 'sly', 'Solyc12g019100.2' => 'sly', 'Solyc12g019110.3' => 'sly', 'Sopen09g002410' => 'spe', 'Sopen12g009300' => 'spe', 'Sp1g12970' => 'spa', 'Sp6g27440' => 'spa', 'TAR375G1057' => 'tar', 'TAR375G1109' => 'tar', 'TAR375G1141' => 'tar', 'TAR623G1183' => 'tar', 'TAR629G1395' => 'tar', 'THA.LOC104805109' => 'tha', 'THA.LOC104808369' => 'tha', 'THA.LOC104824111' => 'tha', 'THA.LOC104827192' => 'tha', 'Thecc.04G116700' => 'tca', 'Thecc.07G159900' => 'tca', 'Thecc.09G180600' => 'tca', 'Thhalv10006628m.g' => 'esa', 'Thhalv10006653m.g' => 'esa', 'Thhalv10012577m.g' => 'esa', 'TPR.G17429' => 'tpr', 'TPR.G34728' => 'tpr', 'TPR.G35631' => 'tpr', 'TWI15G0272' => 'twi', 'TWI74G1301' => 'twi', 'TWI81G0741' => 'twi', 'unitig_744.g24676' => 'ugi', 'unitig_749.g13792' => 'ugi', 'vmacro06728' => 'vma', 'vmacro06729' => 'vma', 'vmacro18535' => 'vma', 'VMungo0464G0907' => 'vmu', 'VMungo0464G1730' => 'vmu', 'VMungo0720G1540' => 'vmu', 'Zm00001eb104290' => 'zma', 'Zm00001eb117220' => 'zma', 'Zm00001eb415210' => 'zma', 'Zm00001eb415220' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001392', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001392' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001392', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '451', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001392' ) ), 'genes' => array( 'A06p10670' => 'bna', 'A07p13380' => 'bna', 'A07p13390' => 'bna', 'A08p27330' => 'bna', 'A08p31910' => 'bna', 'A09p61990' => 'bna', 'A10p22510' => 'bna', 'Aa31LG11G12960' => 'aar', 'Aa31LG1G460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3855' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4580' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3387' => 'aag', 'Actinidia23793' => 'ach', 'Actinidia25176' => 'ach', 'Actinidia28813' => 'ach', 'Actinidia28814' => 'ach', 'Actinidia28815' => 'ach', 'Actinidia32900' => 'ach', 'Actinidia32901' => 'ach', 'Actinidia32902' => 'ach', 'Actinidia34075' => 'ach', 'Actinidia34544' => 'ach', 'Actinidia35731' => 'ach', 'Ah.03g134560' => 'amhyb', 'Ah.12g060150' => 'amhyb', 'AL1G26580' => 'aly', 'AL1G38320' => 'aly', 'AL3G41580' => 'aly', 'AL6G27720' => 'aly', 'Aqoxy2G00612' => 'aox', 'Aqoxy2G00887' => 'aox', 'Aqoxy2G00888' => 'aox', 'Aqoxy2G00889' => 'aox', 'Aqoxy2G00890' => 'aox', 'Aqoxy2G03097' => 'aox', 'Aqoxy7G00465' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0T11RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K04UQ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R98RGQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLS2Y4' => 'arhy', 'AT1G14610' => 'ath', 'AT1G27160' => 'ath', 'AT5G16715' => 'ath', 'ATR0697G119' => 'atr', 'ATR0782G056' => 'atr', 'Atru.chr1.1875' => 'acertr', 'AUR62002803' => 'cqu', 'AUR62014110' => 'cqu', 'AUR62014114' => 'cqu', 'AUR62018211' => 'cqu', 'AUR62038698' => 'cqu', 'AUR62038699' => 'cqu', 'BcaB02g06531' => 'bca', 'BcaB03g13091' => 'bca', 'BcaB03g14115' => 'bca', 'BcaB03g14116' => 'bca', 'BcaC04g18858' => 'bca', 'BcaC04g18859' => 'bca', 'BcaC05g25377' => 'bca', 'BcaC06g34238' => 'bca', 'BcaC06g35085' => 'bca', 'BcaC06g35086' => 'bca', 'BcaC07g38749' => 'bca', 'BcaC07g41556' => 'bca', 'BcaNung05660' => 'bca', 'BolC3t19544H' => 'bol', 'BolC5t30002H' => 'bol', 'BolC7t42520H' => 'bol', 'BolC8t49300H' => 'bol', 'BolC8t52110H' => 'bol', 'BolC9t58869H' => 'bol', 'BraA06t24247Z' => 'bra', 'BraA07t29110Z' => 'bra', 'BraA07t29111Z' => 'bra', 'BraA08t34676Z' => 'bra', 'BraA08t35113Z' => 'bra', 'BraA09t41562Z' => 'bra', 'BraA10t44310Z' => 'bra', 'C05p12580' => 'bna', 'C07p20010' => 'bna', 'C08p16790' => 'bna', 'C08p45570' => 'bna', 'C09p60360' => 'bna', 'CAN.G1091.5' => 'can', 'CAN.G207.6' => 'can', 'CAN.G703.8' => 'can', 'CANSAT56G1922' => 'cansat', 'CANSAT56G2795' => 'cansat', 'CANSAT71G0007' => 'cansat', 'CARHR015110' => 'chi', 'CARHR024700' => 'chi', 'CARHR024710' => 'chi', 'CARHR144600' => 'chi', 'CARHR196470' => 'chi', 'CARHR260940' => 'chi', 'Carub.0001s1437' => 'cru', 'Carub.0001s3391' => 'cru', 'Carub.0005s0101' => 'cru', 'Carub.0006s1493' => 'cru', 'Ca_10801_v3' => 'car', 'Ca_25679_v3' => 'car', 'CBR_g31285' => 'cbr', 'CBR_g4483' => 'cbr', 'CBR_g88870' => 'cbr', 'Cc06_g03770' => 'ccan', 'CDE08G1587' => 'cde', 'CDE10G1341' => 'cde', 'Cfa008272' => 'cfa', 'Cfa017719' => 'cfa', 'Cfa021716' => 'cfa', 'Ciclev10004208m.g' => 'ccl', 'Ciclev10010998m.g' => 'ccl', 'CiPaw.04G068200' => 'cil', 'CiPaw.09G167000' => 'cil', 'CiPaw.09G167100' => 'cil', 'ClCG01G005670' => 'cla', 'ClCG01G005680' => 'cla', 'ClCG05G011510' => 'cla', 'COL.COLO4_04102' => 'col', 'COL.COLO4_09038' => 'col', 'COL.COLO4_09039' => 'col', 'COL.COLO4_25471' => 'col', 'COL.COLO4_31125' => 'col', 'Cpa.g.sc116.46' => 'cpa', 'Cpa.g.sc2.74' => 'cpa', 'Cre07.g350500' => 'cre', 'Cre12.g537100' => 'cre', 'CsaV3_3G020830' => 'csa', 'CsaV3_5G005900' => 'csa', 'CSS0004873' => 'camsi', 'CSS0005968' => 'camsi', 'CSS0006913' => 'camsi', 'CSS0026523' => 'camsi', 'CSS0030571' => 'camsi', 'DCAR_003434' => 'dca', 'DCAR_020225' => 'dca', 'Dinv19030' => 'din', 'Dinv31233' => 'din', 'Dinv36391' => 'din', 'Duzib133G1570' => 'dzi', 'Duzib170G0790' => 'dzi', 'ECA240G1446' => 'eca', 'ECA240G2105' => 'eca', 'ECA246G3910' => 'eca', 'EL10Ac2g03165' => 'bvu', 'EL10Ac5g11700' => 'bvu', 'EL10Ac8g19565' => 'bvu', 'Eucgr.E01106' => 'egr', 'Eucgr.F02848' => 'egr', 'Eucgr.F04425' => 'egr', 'FAN01G1271' => 'fan', 'FAN01G1312' => 'fan', 'FAN03G0802' => 'fan', 'FAN03G1076' => 'fan', 'FAN03G1326' => 'fan', 'FAN03G1857' => 'fan', 'FAN06G0336' => 'fan', 'FAN06G0463' => 'fan', 'FAN06G1244' => 'fan', 'FAN06G3412' => 'fan', 'FAN06G3456' => 'fan', 'FAN10G1869' => 'fan', 'FAN10G3015' => 'fan', 'FAN13G1017' => 'fan', 'FAN18G4114' => 'fan', 'FAN23G3091' => 'fan', 'FvH4_5g33250' => 'fve', 'FvH4_7g01700' => 'fve', 'FvH4_7g04130' => 'fve', 'FvH4_7g28901' => 'fve', 'FvH4_7g28940' => 'fve', 'Glyma.05G089050' => 'gma', 'Glyma.10G239500' => 'gma', 'Glyma.17G186800' => 'gma', 'Glyma.17G186900' => 'gma', 'Glyma.17G187000' => 'gma', 'Glyma.18G051300' => 'gma', 'Glyma.20G155000' => 'gma', 'Gohir.A01G231880' => 'ghi', 'Gohir.A08G018000' => 'ghi', 'Gohir.A08G253800' => 'ghi', 'Gohir.A10G243050' => 'ghi', 'Gohir.A12G276975' => 'ghi', 'Gohir.A12G277201' => 'ghi', 'Gohir.D01G140701' => 'ghi', 'Gohir.D01G222000' => 'ghi', 'Gohir.D03G178350' => 'ghi', 'Gohir.D07G000261' => 'ghi', 'Gohir.D07G000800' => 'ghi', 'Gohir.D08G028600' => 'ghi', 'Gohir.D08G275314' => 'ghi', 'Gohir.D09G073701' => 'ghi', 'Gohir.D10G255000' => 'ghi', 'Gohir.D11G349100' => 'ghi', 'Gohir.D11G349400' => 'ghi', 'Gohir.D12G131400' => 'ghi', 'Gohir.D12G141700' => 'ghi', 'Gorai.002G000100' => 'gra', 'Gorai.002G172800' => 'gra', 'Gorai.002G268700' => 'gra', 'Gorai.004G025700' => 'gra', 'Gorai.005G269400' => 'gra', 'Gorai.005G269600' => 'gra', 'Gorai.005G269800' => 'gra', 'Gorai.006G101900' => 'gra', 'Gorai.006G274700' => 'gra', 'Gorai.007G000600' => 'gra', 'Gorai.007G379600' => 'gra', 'Gorai.008G142700' => 'gra', 'Gorai.008G153100' => 'gra', 'Gorai.008G298700' => 'gra', 'Gorai.008G298900' => 'gra', 'Gorai.011G000300' => 'gra', 'Gorai.011G296000' => 'gra', 'Gorai.N015700' => 'gra', 'GSVIVG01010632001' => 'vvi', 'GSVIVG01010703001' => 'vvi', 'GSVIVG01027222001' => 'vvi', 'GSVIVG01030775001' => 'vvi', 'GSVIVG01030776001' => 'vvi', 'HanXRQChr03g0071441' => 'han', 'HanXRQChr07g0197731' => 'han', 'HanXRQChr10g0283681' => 'han', 'HanXRQChr14g0461381' => 'han', 'Haze_10572' => 'cav', 'Haze_13765' => 'cav', 'Haze_13766' => 'cav', 'Haze_13767' => 'cav', 'Haze_20419' => 'cav', 'Haze_26620' => 'cav', 'Hma1.2p1_0524F.1_g172340' => 'hma', 'Hma1.2p1_0524F.1_g172350' => 'hma', 'Hma1.2p1_0524F.1_g172360' => 'hma', 'Hma1.2p1_0524F.1_g172370' => 'hma', 'Hma1.2p1_1840F.1_g304930' => 'hma', 'Hma1.2p1_1840F.1_g304940' => 'hma', 'HPP92_000859' => 'vpl', 'HPP92_000860' => 'vpl', 'HPP92_000864' => 'vpl', 'HPP92_001073' => 'vpl', 'HPP92_001074' => 'vpl', 'Hund13115' => 'sun', 'Hund20713' => 'sun', 'Hund20715' => 'sun', 'Lalb_Chr12g0210011' => 'lal', 'Lalb_Chr14g0364821' => 'lal', 'Lj2g0008629' => 'lja', 'Lj4A264G50' => 'lonja', 'Lj9C302G3' => 'lonja', 'LjContig00238g0000416' => 'lja', 'Lsat_1_v5_gn_0_3280' => 'lsa', 'Lsat_1_v5_gn_1_100720' => 'lsa', 'Lsat_1_v5_gn_1_100761' => 'lsa', 'Lsat_1_v5_gn_3_65141' => 'lsa', 'Lsat_1_v5_gn_4_121141' => 'lsa', 'Lsat_1_v5_gn_4_173780' => 'lsa', 'Lsat_1_v5_gn_5_24801' => 'lsa', 'Lsat_1_v5_gn_5_61861' => 'lsa', 'Lsat_1_v5_gn_7_60700' => 'lsa', 'Lsat_1_v5_gn_7_60720' => 'lsa', 'Lsat_1_v5_gn_7_60741' => 'lsa', 'Manes.02G076200' => 'mes', 'Manes.09G005800' => 'mes', 'Mapoly0040s0139' => 'mpo', 'Mapoly0132s0012' => 'mpo', 'MBI11_g24566_MAGBIO' => 'mbi', 'MBI18_g01867_MAGBIO' => 'mbi', 'MBI18_g21798_MAGBIO' => 'mbi', 'MBI18_g21799_MAGBIO' => 'mbi', 'MBI18_g21800_MAGBIO' => 'mbi', 'MCO07G752' => 'mco', 'MCO14G022' => 'mco', 'MD01G1196000' => 'mdo', 'MD03G1000400' => 'mdo', 'MD05G1034800' => 'mdo', 'MD06G1107900' => 'mdo', 'MD07G1262800' => 'mdo', 'MD09G1264300' => 'mdo', 'MD09G1264400' => 'mdo', 'MD15G1255900' => 'mdo', 'MD15G1433500' => 'mdo', 'MD17G1256800' => 'mdo', 'MD17G1258800' => 'mdo', 'MD17G1259600' => 'mdo', 'MD17G1259800' => 'mdo', 'MD17G1260100' => 'mdo', 'Medtr1g101620' => 'mtr', 'Medtr6g027620' => 'mtr', 'MELO3C005366.2' => 'cme', 'MELO3C020199.2' => 'cme', 'Migut.D01299' => 'egut', 'Migut.J00558' => 'egut', 'Migut.J00692' => 'egut', 'Migut.L01675' => 'egut', 'MSTRG.26714' => 'ama', 'MSTRG.4620' => 'ama', 'Nitab4.5_0000203g0010' => 'nta', 'Nitab4.5_0000669g0060' => 'nta', 'Nitab4.5_0001206g0010' => 'nta', 'Nitab4.5_0001206g0020' => 'nta', 'Nitab4.5_0003197g0040' => 'nta', 'Nitab4.5_0004484g0010' => 'nta', 'Nitab4.5_0004729g0010' => 'nta', 'Nitab4.5_0004729g0020' => 'nta', 'Nitab4.5_0008025g0020' => 'nta', 'Nn7g38289' => 'nnu', 'Nn8g40729' => 'nnu', 'Oeu001345.1' => 'oeu', 'Oeu006731.1' => 'oeu', 'Oeu006734.3' => 'oeu', 'Oeu022370.1' => 'oeu', 'Oeu023509.1' => 'oeu', 'Os03g0111700' => 'osa', 'Os03g0335600' => 'osa', 'Os03g0694900' => 'osa', 'Os07g0163500' => 'osa', 'Os10g0506200' => 'osa', 'Peaxi162Scf00057g02721' => 'pax', 'Peaxi162Scf00057g02722' => 'pax', 'Peaxi162Scf00057g02723' => 'pax', 'Peaxi162Scf00079g00089' => 'pax', 'Peaxi162Scf00169g00036' => 'pax', 'Peaxi162Scf00182g00085' => 'pax', 'Peaxi162Scf00182g00086' => 'pax', 'Peaxi162Scf00254g00012' => 'pax', 'Peaxi162Scf00597g00719' => 'pax', 'PGR004G0453' => 'pgr', 'PGR031G0644' => 'pgr', 'PGR031G2005' => 'pgr', 'PGR031G3093' => 'pgr', 'PGR031G3244' => 'pgr', 'PGR031G3606' => 'pgr', 'Phvul.004G073700' => 'pvu', 'Phvul.007G066400' => 'pvu', 'Potri.004G090666' => 'ptr', 'Potri.004G090732' => 'ptr', 'Potri.005G087850' => 'ptr', 'Potri.007G004100' => 'ptr', 'Potri.017G124500' => 'ptr', 'Pp3c12_13790' => 'ppa', 'Pp3c1_36010' => 'ppa', 'Pp3c2_9830' => 'ppa', 'PRCOL_00006335' => 'pco', 'PRCOL_00006948' => 'pco', 'Prupe.1G576900' => 'ppe', 'Prupe.2G289400' => 'ppe', 'Prupe.3G161900' => 'ppe', 'Prupe.3G162000' => 'ppe', 'Psat1g089800' => 'psa', 'Psat6g201440' => 'psa', 'PSO339G4038' => 'pso', 'PSO384G0294' => 'pso', 'PSO478G1977' => 'pso', 'PSO782G2668' => 'pso', 'PSO832G0335' => 'pso', 'PSO832G4571' => 'pso', 'QL06p044842' => 'qlo', 'QL07p019084' => 'qlo', 'QL09p015520' => 'qlo', 'QL09p048218' => 'qlo', 'QL11p048138' => 'qlo', 'QL11p048141' => 'qlo', 'QL11p048148' => 'qlo', 'RcHm_v2.0_Chr1g0328051' => 'rch', 'RcHm_v2.0_Chr1g0376611' => 'rch', 'RcHm_v2.0_Chr2g0151751' => 'rch', 'RcHm_v2.0_Chr2g0151761' => 'rch', 'RcHm_v2.0_Chr5g0049821' => 'rch', 'RcHm_v2.0_Chr5g0066661' => 'rch', 'RcHm_v2.0_Chr7g0182401' => 'rch', 'RcHm_v2.0_Chr7g0218391' => 'rch', 'RcHm_v2.0_Chr7g0218401' => 'rch', 'RcHm_v2.0_Chr7g0218411' => 'rch', 'RcHm_v2.0_Chr7g0232241' => 'rch', 'RcHm_v2.0_Chr7g0232251' => 'rch', 'RcHm_v2.0_Chr7g0232281' => 'rch', 'RcHm_v2.0_Chr7g0232291' => 'rch', 'RcHm_v2.0_Chr7g0232301' => 'rch', 'Rhsim08G0018500' => 'rsi', 'Sabra07G0003000' => 'sbr', 'Sabra17G0105100' => 'sbr', 'SalBow5G1075' => 'sbo', 'Sc07g0001630' => 'sci', 'Sc14g0006490' => 'sci', 'Sed0004659' => 'sed', 'Sed0009589' => 'sed', 'Sed0018333' => 'sed', 'SEGI_00245' => 'sgi', 'SEGI_04262' => 'sgi', 'SEGI_06790' => 'sgi', 'SEGI_08428' => 'sgi', 'SEGI_11941' => 'sgi', 'SEGI_13833' => 'sgi', 'SEGI_14901' => 'sgi', 'SEGI_20814' => 'sgi', 'SEGI_24849' => 'sgi', 'SEGI_27948' => 'sgi', 'SEGI_33021' => 'sgi', 'SGA_v2.0_scaffold35G14149' => 'sas', 'SGA_v2.0_scaffold40G15632' => 'sas', 'SGA_v2.0_scaffold452G51847' => 'sas', 'SHI25544' => 'shi', 'SHI25545' => 'shi', 'SHI25546' => 'shi', 'SHI25547' => 'shi', 'SHI28861' => 'shi', 'SMO165G0098' => 'smo', 'SMO358G0706' => 'smo', 'Solyc09g007540.3' => 'sly', 'Solyc12g019100.2' => 'sly', 'Solyc12g019110.3' => 'sly', 'Sopen09g002410' => 'spe', 'Sopen12g009300' => 'spe', 'Sp1g12970' => 'spa', 'Sp6g27440' => 'spa', 'TAR375G1057' => 'tar', 'TAR375G1109' => 'tar', 'TAR375G1141' => 'tar', 'TAR623G1183' => 'tar', 'TAR629G1395' => 'tar', 'THA.LOC104805109' => 'tha', 'THA.LOC104808369' => 'tha', 'THA.LOC104824111' => 'tha', 'THA.LOC104827192' => 'tha', 'Thecc.04G116700' => 'tca', 'Thecc.07G159900' => 'tca', 'Thecc.09G180600' => 'tca', 'Thhalv10006628m.g' => 'esa', 'Thhalv10006653m.g' => 'esa', 'Thhalv10012577m.g' => 'esa', 'TPR.G17429' => 'tpr', 'TPR.G34728' => 'tpr', 'TPR.G35631' => 'tpr', 'TWI15G0272' => 'twi', 'TWI74G1301' => 'twi', 'TWI81G0741' => 'twi', 'unitig_744.g24676' => 'ugi', 'unitig_749.g13792' => 'ugi', 'vmacro06728' => 'vma', 'vmacro06729' => 'vma', 'vmacro18535' => 'vma', 'VMungo0464G0907' => 'vmu', 'VMungo0464G1730' => 'vmu', 'VMungo0720G1540' => 'vmu', 'Zm00001eb104290' => 'zma', 'Zm00001eb117220' => 'zma', 'Zm00001eb415210' => 'zma', 'Zm00001eb415220' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001392' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001392' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001392' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001392' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001392', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '451', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A06p10670' => 'bna', 'A07p13380' => 'bna', 'A07p13390' => 'bna', 'A08p27330' => 'bna', 'A08p31910' => 'bna', 'A09p61990' => 'bna', 'A10p22510' => 'bna', 'Aa31LG11G12960' => 'aar', 'Aa31LG1G460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3855' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4580' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3387' => 'aag', 'Actinidia23793' => 'ach', 'Actinidia25176' => 'ach', 'Actinidia28813' => 'ach', 'Actinidia28814' => 'ach', 'Actinidia28815' => 'ach', 'Actinidia32900' => 'ach', 'Actinidia32901' => 'ach', 'Actinidia32902' => 'ach', 'Actinidia34075' => 'ach', 'Actinidia34544' => 'ach', 'Actinidia35731' => 'ach', 'Ah.03g134560' => 'amhyb', 'Ah.12g060150' => 'amhyb', 'AL1G26580' => 'aly', 'AL1G38320' => 'aly', 'AL3G41580' => 'aly', 'AL6G27720' => 'aly', 'Aqoxy2G00612' => 'aox', 'Aqoxy2G00887' => 'aox', 'Aqoxy2G00888' => 'aox', 'Aqoxy2G00889' => 'aox', 'Aqoxy2G00890' => 'aox', 'Aqoxy2G03097' => 'aox', 'Aqoxy7G00465' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0T11RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K04UQ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R98RGQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLS2Y4' => 'arhy', 'AT1G14610' => 'ath', 'AT1G27160' => 'ath', 'AT5G16715' => 'ath', 'ATR0697G119' => 'atr', 'ATR0782G056' => 'atr', 'Atru.chr1.1875' => 'acertr', 'AUR62002803' => 'cqu', 'AUR62014110' => 'cqu', 'AUR62014114' => 'cqu', 'AUR62018211' => 'cqu', 'AUR62038698' => 'cqu', 'AUR62038699' => 'cqu', 'BcaB02g06531' => 'bca', 'BcaB03g13091' => 'bca', 'BcaB03g14115' => 'bca', 'BcaB03g14116' => 'bca', 'BcaC04g18858' => 'bca', 'BcaC04g18859' => 'bca', 'BcaC05g25377' => 'bca', 'BcaC06g34238' => 'bca', 'BcaC06g35085' => 'bca', 'BcaC06g35086' => 'bca', 'BcaC07g38749' => 'bca', 'BcaC07g41556' => 'bca', 'BcaNung05660' => 'bca', 'BolC3t19544H' => 'bol', 'BolC5t30002H' => 'bol', 'BolC7t42520H' => 'bol', 'BolC8t49300H' => 'bol', 'BolC8t52110H' => 'bol', 'BolC9t58869H' => 'bol', 'BraA06t24247Z' => 'bra', 'BraA07t29110Z' => 'bra', 'BraA07t29111Z' => 'bra', 'BraA08t34676Z' => 'bra', 'BraA08t35113Z' => 'bra', 'BraA09t41562Z' => 'bra', 'BraA10t44310Z' => 'bra', 'C05p12580' => 'bna', 'C07p20010' => 'bna', 'C08p16790' => 'bna', 'C08p45570' => 'bna', 'C09p60360' => 'bna', 'CAN.G1091.5' => 'can', 'CAN.G207.6' => 'can', 'CAN.G703.8' => 'can', 'CANSAT56G1922' => 'cansat', 'CANSAT56G2795' => 'cansat', 'CANSAT71G0007' => 'cansat', 'CARHR015110' => 'chi', 'CARHR024700' => 'chi', 'CARHR024710' => 'chi', 'CARHR144600' => 'chi', 'CARHR196470' => 'chi', 'CARHR260940' => 'chi', 'Carub.0001s1437' => 'cru', 'Carub.0001s3391' => 'cru', 'Carub.0005s0101' => 'cru', 'Carub.0006s1493' => 'cru', 'Ca_10801_v3' => 'car', 'Ca_25679_v3' => 'car', 'CBR_g31285' => 'cbr', 'CBR_g4483' => 'cbr', 'CBR_g88870' => 'cbr', 'Cc06_g03770' => 'ccan', 'CDE08G1587' => 'cde', 'CDE10G1341' => 'cde', 'Cfa008272' => 'cfa', 'Cfa017719' => 'cfa', 'Cfa021716' => 'cfa', 'Ciclev10004208m.g' => 'ccl', 'Ciclev10010998m.g' => 'ccl', 'CiPaw.04G068200' => 'cil', 'CiPaw.09G167000' => 'cil', 'CiPaw.09G167100' => 'cil', 'ClCG01G005670' => 'cla', 'ClCG01G005680' => 'cla', 'ClCG05G011510' => 'cla', 'COL.COLO4_04102' => 'col', 'COL.COLO4_09038' => 'col', 'COL.COLO4_09039' => 'col', 'COL.COLO4_25471' => 'col', 'COL.COLO4_31125' => 'col', 'Cpa.g.sc116.46' => 'cpa', 'Cpa.g.sc2.74' => 'cpa', 'Cre07.g350500' => 'cre', 'Cre12.g537100' => 'cre', 'CsaV3_3G020830' => 'csa', 'CsaV3_5G005900' => 'csa', 'CSS0004873' => 'camsi', 'CSS0005968' => 'camsi', 'CSS0006913' => 'camsi', 'CSS0026523' => 'camsi', 'CSS0030571' => 'camsi', 'DCAR_003434' => 'dca', 'DCAR_020225' => 'dca', 'Dinv19030' => 'din', 'Dinv31233' => 'din', 'Dinv36391' => 'din', 'Duzib133G1570' => 'dzi', 'Duzib170G0790' => 'dzi', 'ECA240G1446' => 'eca', 'ECA240G2105' => 'eca', 'ECA246G3910' => 'eca', 'EL10Ac2g03165' => 'bvu', 'EL10Ac5g11700' => 'bvu', 'EL10Ac8g19565' => 'bvu', 'Eucgr.E01106' => 'egr', 'Eucgr.F02848' => 'egr', 'Eucgr.F04425' => 'egr', 'FAN01G1271' => 'fan', 'FAN01G1312' => 'fan', 'FAN03G0802' => 'fan', 'FAN03G1076' => 'fan', 'FAN03G1326' => 'fan', 'FAN03G1857' => 'fan', 'FAN06G0336' => 'fan', 'FAN06G0463' => 'fan', 'FAN06G1244' => 'fan', 'FAN06G3412' => 'fan', 'FAN06G3456' => 'fan', 'FAN10G1869' => 'fan', 'FAN10G3015' => 'fan', 'FAN13G1017' => 'fan', 'FAN18G4114' => 'fan', 'FAN23G3091' => 'fan', 'FvH4_5g33250' => 'fve', 'FvH4_7g01700' => 'fve', 'FvH4_7g04130' => 'fve', 'FvH4_7g28901' => 'fve', 'FvH4_7g28940' => 'fve', 'Glyma.05G089050' => 'gma', 'Glyma.10G239500' => 'gma', 'Glyma.17G186800' => 'gma', 'Glyma.17G186900' => 'gma', 'Glyma.17G187000' => 'gma', 'Glyma.18G051300' => 'gma', 'Glyma.20G155000' => 'gma', 'Gohir.A01G231880' => 'ghi', 'Gohir.A08G018000' => 'ghi', 'Gohir.A08G253800' => 'ghi', 'Gohir.A10G243050' => 'ghi', 'Gohir.A12G276975' => 'ghi', 'Gohir.A12G277201' => 'ghi', 'Gohir.D01G140701' => 'ghi', 'Gohir.D01G222000' => 'ghi', 'Gohir.D03G178350' => 'ghi', 'Gohir.D07G000261' => 'ghi', 'Gohir.D07G000800' => 'ghi', 'Gohir.D08G028600' => 'ghi', 'Gohir.D08G275314' => 'ghi', 'Gohir.D09G073701' => 'ghi', 'Gohir.D10G255000' => 'ghi', 'Gohir.D11G349100' => 'ghi', 'Gohir.D11G349400' => 'ghi', 'Gohir.D12G131400' => 'ghi', 'Gohir.D12G141700' => 'ghi', 'Gorai.002G000100' => 'gra', 'Gorai.002G172800' => 'gra', 'Gorai.002G268700' => 'gra', 'Gorai.004G025700' => 'gra', 'Gorai.005G269400' => 'gra', 'Gorai.005G269600' => 'gra', 'Gorai.005G269800' => 'gra', 'Gorai.006G101900' => 'gra', 'Gorai.006G274700' => 'gra', 'Gorai.007G000600' => 'gra', 'Gorai.007G379600' => 'gra', 'Gorai.008G142700' => 'gra', 'Gorai.008G153100' => 'gra', 'Gorai.008G298700' => 'gra', 'Gorai.008G298900' => 'gra', 'Gorai.011G000300' => 'gra', 'Gorai.011G296000' => 'gra', 'Gorai.N015700' => 'gra', 'GSVIVG01010632001' => 'vvi', 'GSVIVG01010703001' => 'vvi', 'GSVIVG01027222001' => 'vvi', 'GSVIVG01030775001' => 'vvi', 'GSVIVG01030776001' => 'vvi', 'HanXRQChr03g0071441' => 'han', 'HanXRQChr07g0197731' => 'han', 'HanXRQChr10g0283681' => 'han', 'HanXRQChr14g0461381' => 'han', 'Haze_10572' => 'cav', 'Haze_13765' => 'cav', 'Haze_13766' => 'cav', 'Haze_13767' => 'cav', 'Haze_20419' => 'cav', 'Haze_26620' => 'cav', 'Hma1.2p1_0524F.1_g172340' => 'hma', 'Hma1.2p1_0524F.1_g172350' => 'hma', 'Hma1.2p1_0524F.1_g172360' => 'hma', 'Hma1.2p1_0524F.1_g172370' => 'hma', 'Hma1.2p1_1840F.1_g304930' => 'hma', 'Hma1.2p1_1840F.1_g304940' => 'hma', 'HPP92_000859' => 'vpl', 'HPP92_000860' => 'vpl', 'HPP92_000864' => 'vpl', 'HPP92_001073' => 'vpl', 'HPP92_001074' => 'vpl', 'Hund13115' => 'sun', 'Hund20713' => 'sun', 'Hund20715' => 'sun', 'Lalb_Chr12g0210011' => 'lal', 'Lalb_Chr14g0364821' => 'lal', 'Lj2g0008629' => 'lja', 'Lj4A264G50' => 'lonja', 'Lj9C302G3' => 'lonja', 'LjContig00238g0000416' => 'lja', 'Lsat_1_v5_gn_0_3280' => 'lsa', 'Lsat_1_v5_gn_1_100720' => 'lsa', 'Lsat_1_v5_gn_1_100761' => 'lsa', 'Lsat_1_v5_gn_3_65141' => 'lsa', 'Lsat_1_v5_gn_4_121141' => 'lsa', 'Lsat_1_v5_gn_4_173780' => 'lsa', 'Lsat_1_v5_gn_5_24801' => 'lsa', 'Lsat_1_v5_gn_5_61861' => 'lsa', 'Lsat_1_v5_gn_7_60700' => 'lsa', 'Lsat_1_v5_gn_7_60720' => 'lsa', 'Lsat_1_v5_gn_7_60741' => 'lsa', 'Manes.02G076200' => 'mes', 'Manes.09G005800' => 'mes', 'Mapoly0040s0139' => 'mpo', 'Mapoly0132s0012' => 'mpo', 'MBI11_g24566_MAGBIO' => 'mbi', 'MBI18_g01867_MAGBIO' => 'mbi', 'MBI18_g21798_MAGBIO' => 'mbi', 'MBI18_g21799_MAGBIO' => 'mbi', 'MBI18_g21800_MAGBIO' => 'mbi', 'MCO07G752' => 'mco', 'MCO14G022' => 'mco', 'MD01G1196000' => 'mdo', 'MD03G1000400' => 'mdo', 'MD05G1034800' => 'mdo', 'MD06G1107900' => 'mdo', 'MD07G1262800' => 'mdo', 'MD09G1264300' => 'mdo', 'MD09G1264400' => 'mdo', 'MD15G1255900' => 'mdo', 'MD15G1433500' => 'mdo', 'MD17G1256800' => 'mdo', 'MD17G1258800' => 'mdo', 'MD17G1259600' => 'mdo', 'MD17G1259800' => 'mdo', 'MD17G1260100' => 'mdo', 'Medtr1g101620' => 'mtr', 'Medtr6g027620' => 'mtr', 'MELO3C005366.2' => 'cme', 'MELO3C020199.2' => 'cme', 'Migut.D01299' => 'egut', 'Migut.J00558' => 'egut', 'Migut.J00692' => 'egut', 'Migut.L01675' => 'egut', 'MSTRG.26714' => 'ama', 'MSTRG.4620' => 'ama', 'Nitab4.5_0000203g0010' => 'nta', 'Nitab4.5_0000669g0060' => 'nta', 'Nitab4.5_0001206g0010' => 'nta', 'Nitab4.5_0001206g0020' => 'nta', 'Nitab4.5_0003197g0040' => 'nta', 'Nitab4.5_0004484g0010' => 'nta', 'Nitab4.5_0004729g0010' => 'nta', 'Nitab4.5_0004729g0020' => 'nta', 'Nitab4.5_0008025g0020' => 'nta', 'Nn7g38289' => 'nnu', 'Nn8g40729' => 'nnu', 'Oeu001345.1' => 'oeu', 'Oeu006731.1' => 'oeu', 'Oeu006734.3' => 'oeu', 'Oeu022370.1' => 'oeu', 'Oeu023509.1' => 'oeu', 'Os03g0111700' => 'osa', 'Os03g0335600' => 'osa', 'Os03g0694900' => 'osa', 'Os07g0163500' => 'osa', 'Os10g0506200' => 'osa', 'Peaxi162Scf00057g02721' => 'pax', 'Peaxi162Scf00057g02722' => 'pax', 'Peaxi162Scf00057g02723' => 'pax', 'Peaxi162Scf00079g00089' => 'pax', 'Peaxi162Scf00169g00036' => 'pax', 'Peaxi162Scf00182g00085' => 'pax', 'Peaxi162Scf00182g00086' => 'pax', 'Peaxi162Scf00254g00012' => 'pax', 'Peaxi162Scf00597g00719' => 'pax', 'PGR004G0453' => 'pgr', 'PGR031G0644' => 'pgr', 'PGR031G2005' => 'pgr', 'PGR031G3093' => 'pgr', 'PGR031G3244' => 'pgr', 'PGR031G3606' => 'pgr', 'Phvul.004G073700' => 'pvu', 'Phvul.007G066400' => 'pvu', 'Potri.004G090666' => 'ptr', 'Potri.004G090732' => 'ptr', 'Potri.005G087850' => 'ptr', 'Potri.007G004100' => 'ptr', 'Potri.017G124500' => 'ptr', 'Pp3c12_13790' => 'ppa', 'Pp3c1_36010' => 'ppa', 'Pp3c2_9830' => 'ppa', 'PRCOL_00006335' => 'pco', 'PRCOL_00006948' => 'pco', 'Prupe.1G576900' => 'ppe', 'Prupe.2G289400' => 'ppe', 'Prupe.3G161900' => 'ppe', 'Prupe.3G162000' => 'ppe', 'Psat1g089800' => 'psa', 'Psat6g201440' => 'psa', 'PSO339G4038' => 'pso', 'PSO384G0294' => 'pso', 'PSO478G1977' => 'pso', 'PSO782G2668' => 'pso', 'PSO832G0335' => 'pso', 'PSO832G4571' => 'pso', 'QL06p044842' => 'qlo', 'QL07p019084' => 'qlo', 'QL09p015520' => 'qlo', 'QL09p048218' => 'qlo', 'QL11p048138' => 'qlo', 'QL11p048141' => 'qlo', 'QL11p048148' => 'qlo', 'RcHm_v2.0_Chr1g0328051' => 'rch', 'RcHm_v2.0_Chr1g0376611' => 'rch', 'RcHm_v2.0_Chr2g0151751' => 'rch', 'RcHm_v2.0_Chr2g0151761' => 'rch', 'RcHm_v2.0_Chr5g0049821' => 'rch', 'RcHm_v2.0_Chr5g0066661' => 'rch', 'RcHm_v2.0_Chr7g0182401' => 'rch', 'RcHm_v2.0_Chr7g0218391' => 'rch', 'RcHm_v2.0_Chr7g0218401' => 'rch', 'RcHm_v2.0_Chr7g0218411' => 'rch', 'RcHm_v2.0_Chr7g0232241' => 'rch', 'RcHm_v2.0_Chr7g0232251' => 'rch', 'RcHm_v2.0_Chr7g0232281' => 'rch', 'RcHm_v2.0_Chr7g0232291' => 'rch', 'RcHm_v2.0_Chr7g0232301' => 'rch', 'Rhsim08G0018500' => 'rsi', 'Sabra07G0003000' => 'sbr', 'Sabra17G0105100' => 'sbr', 'SalBow5G1075' => 'sbo', 'Sc07g0001630' => 'sci', 'Sc14g0006490' => 'sci', 'Sed0004659' => 'sed', 'Sed0009589' => 'sed', 'Sed0018333' => 'sed', 'SEGI_00245' => 'sgi', 'SEGI_04262' => 'sgi', 'SEGI_06790' => 'sgi', 'SEGI_08428' => 'sgi', 'SEGI_11941' => 'sgi', 'SEGI_13833' => 'sgi', 'SEGI_14901' => 'sgi', 'SEGI_20814' => 'sgi', 'SEGI_24849' => 'sgi', 'SEGI_27948' => 'sgi', 'SEGI_33021' => 'sgi', 'SGA_v2.0_scaffold35G14149' => 'sas', 'SGA_v2.0_scaffold40G15632' => 'sas', 'SGA_v2.0_scaffold452G51847' => 'sas', 'SHI25544' => 'shi', 'SHI25545' => 'shi', 'SHI25546' => 'shi', 'SHI25547' => 'shi', 'SHI28861' => 'shi', 'SMO165G0098' => 'smo', 'SMO358G0706' => 'smo', 'Solyc09g007540.3' => 'sly', 'Solyc12g019100.2' => 'sly', 'Solyc12g019110.3' => 'sly', 'Sopen09g002410' => 'spe', 'Sopen12g009300' => 'spe', 'Sp1g12970' => 'spa', 'Sp6g27440' => 'spa', 'TAR375G1057' => 'tar', 'TAR375G1109' => 'tar', 'TAR375G1141' => 'tar', 'TAR623G1183' => 'tar', 'TAR629G1395' => 'tar', 'THA.LOC104805109' => 'tha', 'THA.LOC104808369' => 'tha', 'THA.LOC104824111' => 'tha', 'THA.LOC104827192' => 'tha', 'Thecc.04G116700' => 'tca', 'Thecc.07G159900' => 'tca', 'Thecc.09G180600' => 'tca', 'Thhalv10006628m.g' => 'esa', 'Thhalv10006653m.g' => 'esa', 'Thhalv10012577m.g' => 'esa', 'TPR.G17429' => 'tpr', 'TPR.G34728' => 'tpr', 'TPR.G35631' => 'tpr', 'TWI15G0272' => 'twi', 'TWI74G1301' => 'twi', 'TWI81G0741' => 'twi', 'unitig_744.g24676' => 'ugi', 'unitig_749.g13792' => 'ugi', 'vmacro06728' => 'vma', 'vmacro06729' => 'vma', 'vmacro18535' => 'vma', 'VMungo0464G0907' => 'vmu', 'VMungo0464G1730' => 'vmu', 'VMungo0720G1540' => 'vmu', 'Zm00001eb104290' => 'zma', 'Zm00001eb117220' => 'zma', 'Zm00001eb415210' => 'zma', 'Zm00001eb415220' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001392', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001392' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001392', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '451', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001392' ) ), 'genes' => array( 'A06p10670' => 'bna', 'A07p13380' => 'bna', 'A07p13390' => 'bna', 'A08p27330' => 'bna', 'A08p31910' => 'bna', 'A09p61990' => 'bna', 'A10p22510' => 'bna', 'Aa31LG11G12960' => 'aar', 'Aa31LG1G460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3855' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4580' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3387' => 'aag', 'Actinidia23793' => 'ach', 'Actinidia25176' => 'ach', 'Actinidia28813' => 'ach', 'Actinidia28814' => 'ach', 'Actinidia28815' => 'ach', 'Actinidia32900' => 'ach', 'Actinidia32901' => 'ach', 'Actinidia32902' => 'ach', 'Actinidia34075' => 'ach', 'Actinidia34544' => 'ach', 'Actinidia35731' => 'ach', 'Ah.03g134560' => 'amhyb', 'Ah.12g060150' => 'amhyb', 'AL1G26580' => 'aly', 'AL1G38320' => 'aly', 'AL3G41580' => 'aly', 'AL6G27720' => 'aly', 'Aqoxy2G00612' => 'aox', 'Aqoxy2G00887' => 'aox', 'Aqoxy2G00888' => 'aox', 'Aqoxy2G00889' => 'aox', 'Aqoxy2G00890' => 'aox', 'Aqoxy2G03097' => 'aox', 'Aqoxy7G00465' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0T11RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K04UQ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R98RGQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLS2Y4' => 'arhy', 'AT1G14610' => 'ath', 'AT1G27160' => 'ath', 'AT5G16715' => 'ath', 'ATR0697G119' => 'atr', 'ATR0782G056' => 'atr', 'Atru.chr1.1875' => 'acertr', 'AUR62002803' => 'cqu', 'AUR62014110' => 'cqu', 'AUR62014114' => 'cqu', 'AUR62018211' => 'cqu', 'AUR62038698' => 'cqu', 'AUR62038699' => 'cqu', 'BcaB02g06531' => 'bca', 'BcaB03g13091' => 'bca', 'BcaB03g14115' => 'bca', 'BcaB03g14116' => 'bca', 'BcaC04g18858' => 'bca', 'BcaC04g18859' => 'bca', 'BcaC05g25377' => 'bca', 'BcaC06g34238' => 'bca', 'BcaC06g35085' => 'bca', 'BcaC06g35086' => 'bca', 'BcaC07g38749' => 'bca', 'BcaC07g41556' => 'bca', 'BcaNung05660' => 'bca', 'BolC3t19544H' => 'bol', 'BolC5t30002H' => 'bol', 'BolC7t42520H' => 'bol', 'BolC8t49300H' => 'bol', 'BolC8t52110H' => 'bol', 'BolC9t58869H' => 'bol', 'BraA06t24247Z' => 'bra', 'BraA07t29110Z' => 'bra', 'BraA07t29111Z' => 'bra', 'BraA08t34676Z' => 'bra', 'BraA08t35113Z' => 'bra', 'BraA09t41562Z' => 'bra', 'BraA10t44310Z' => 'bra', 'C05p12580' => 'bna', 'C07p20010' => 'bna', 'C08p16790' => 'bna', 'C08p45570' => 'bna', 'C09p60360' => 'bna', 'CAN.G1091.5' => 'can', 'CAN.G207.6' => 'can', 'CAN.G703.8' => 'can', 'CANSAT56G1922' => 'cansat', 'CANSAT56G2795' => 'cansat', 'CANSAT71G0007' => 'cansat', 'CARHR015110' => 'chi', 'CARHR024700' => 'chi', 'CARHR024710' => 'chi', 'CARHR144600' => 'chi', 'CARHR196470' => 'chi', 'CARHR260940' => 'chi', 'Carub.0001s1437' => 'cru', 'Carub.0001s3391' => 'cru', 'Carub.0005s0101' => 'cru', 'Carub.0006s1493' => 'cru', 'Ca_10801_v3' => 'car', 'Ca_25679_v3' => 'car', 'CBR_g31285' => 'cbr', 'CBR_g4483' => 'cbr', 'CBR_g88870' => 'cbr', 'Cc06_g03770' => 'ccan', 'CDE08G1587' => 'cde', 'CDE10G1341' => 'cde', 'Cfa008272' => 'cfa', 'Cfa017719' => 'cfa', 'Cfa021716' => 'cfa', 'Ciclev10004208m.g' => 'ccl', 'Ciclev10010998m.g' => 'ccl', 'CiPaw.04G068200' => 'cil', 'CiPaw.09G167000' => 'cil', 'CiPaw.09G167100' => 'cil', 'ClCG01G005670' => 'cla', 'ClCG01G005680' => 'cla', 'ClCG05G011510' => 'cla', 'COL.COLO4_04102' => 'col', 'COL.COLO4_09038' => 'col', 'COL.COLO4_09039' => 'col', 'COL.COLO4_25471' => 'col', 'COL.COLO4_31125' => 'col', 'Cpa.g.sc116.46' => 'cpa', 'Cpa.g.sc2.74' => 'cpa', 'Cre07.g350500' => 'cre', 'Cre12.g537100' => 'cre', 'CsaV3_3G020830' => 'csa', 'CsaV3_5G005900' => 'csa', 'CSS0004873' => 'camsi', 'CSS0005968' => 'camsi', 'CSS0006913' => 'camsi', 'CSS0026523' => 'camsi', 'CSS0030571' => 'camsi', 'DCAR_003434' => 'dca', 'DCAR_020225' => 'dca', 'Dinv19030' => 'din', 'Dinv31233' => 'din', 'Dinv36391' => 'din', 'Duzib133G1570' => 'dzi', 'Duzib170G0790' => 'dzi', 'ECA240G1446' => 'eca', 'ECA240G2105' => 'eca', 'ECA246G3910' => 'eca', 'EL10Ac2g03165' => 'bvu', 'EL10Ac5g11700' => 'bvu', 'EL10Ac8g19565' => 'bvu', 'Eucgr.E01106' => 'egr', 'Eucgr.F02848' => 'egr', 'Eucgr.F04425' => 'egr', 'FAN01G1271' => 'fan', 'FAN01G1312' => 'fan', 'FAN03G0802' => 'fan', 'FAN03G1076' => 'fan', 'FAN03G1326' => 'fan', 'FAN03G1857' => 'fan', 'FAN06G0336' => 'fan', 'FAN06G0463' => 'fan', 'FAN06G1244' => 'fan', 'FAN06G3412' => 'fan', 'FAN06G3456' => 'fan', 'FAN10G1869' => 'fan', 'FAN10G3015' => 'fan', 'FAN13G1017' => 'fan', 'FAN18G4114' => 'fan', 'FAN23G3091' => 'fan', 'FvH4_5g33250' => 'fve', 'FvH4_7g01700' => 'fve', 'FvH4_7g04130' => 'fve', 'FvH4_7g28901' => 'fve', 'FvH4_7g28940' => 'fve', 'Glyma.05G089050' => 'gma', 'Glyma.10G239500' => 'gma', 'Glyma.17G186800' => 'gma', 'Glyma.17G186900' => 'gma', 'Glyma.17G187000' => 'gma', 'Glyma.18G051300' => 'gma', 'Glyma.20G155000' => 'gma', 'Gohir.A01G231880' => 'ghi', 'Gohir.A08G018000' => 'ghi', 'Gohir.A08G253800' => 'ghi', 'Gohir.A10G243050' => 'ghi', 'Gohir.A12G276975' => 'ghi', 'Gohir.A12G277201' => 'ghi', 'Gohir.D01G140701' => 'ghi', 'Gohir.D01G222000' => 'ghi', 'Gohir.D03G178350' => 'ghi', 'Gohir.D07G000261' => 'ghi', 'Gohir.D07G000800' => 'ghi', 'Gohir.D08G028600' => 'ghi', 'Gohir.D08G275314' => 'ghi', 'Gohir.D09G073701' => 'ghi', 'Gohir.D10G255000' => 'ghi', 'Gohir.D11G349100' => 'ghi', 'Gohir.D11G349400' => 'ghi', 'Gohir.D12G131400' => 'ghi', 'Gohir.D12G141700' => 'ghi', 'Gorai.002G000100' => 'gra', 'Gorai.002G172800' => 'gra', 'Gorai.002G268700' => 'gra', 'Gorai.004G025700' => 'gra', 'Gorai.005G269400' => 'gra', 'Gorai.005G269600' => 'gra', 'Gorai.005G269800' => 'gra', 'Gorai.006G101900' => 'gra', 'Gorai.006G274700' => 'gra', 'Gorai.007G000600' => 'gra', 'Gorai.007G379600' => 'gra', 'Gorai.008G142700' => 'gra', 'Gorai.008G153100' => 'gra', 'Gorai.008G298700' => 'gra', 'Gorai.008G298900' => 'gra', 'Gorai.011G000300' => 'gra', 'Gorai.011G296000' => 'gra', 'Gorai.N015700' => 'gra', 'GSVIVG01010632001' => 'vvi', 'GSVIVG01010703001' => 'vvi', 'GSVIVG01027222001' => 'vvi', 'GSVIVG01030775001' => 'vvi', 'GSVIVG01030776001' => 'vvi', 'HanXRQChr03g0071441' => 'han', 'HanXRQChr07g0197731' => 'han', 'HanXRQChr10g0283681' => 'han', 'HanXRQChr14g0461381' => 'han', 'Haze_10572' => 'cav', 'Haze_13765' => 'cav', 'Haze_13766' => 'cav', 'Haze_13767' => 'cav', 'Haze_20419' => 'cav', 'Haze_26620' => 'cav', 'Hma1.2p1_0524F.1_g172340' => 'hma', 'Hma1.2p1_0524F.1_g172350' => 'hma', 'Hma1.2p1_0524F.1_g172360' => 'hma', 'Hma1.2p1_0524F.1_g172370' => 'hma', 'Hma1.2p1_1840F.1_g304930' => 'hma', 'Hma1.2p1_1840F.1_g304940' => 'hma', 'HPP92_000859' => 'vpl', 'HPP92_000860' => 'vpl', 'HPP92_000864' => 'vpl', 'HPP92_001073' => 'vpl', 'HPP92_001074' => 'vpl', 'Hund13115' => 'sun', 'Hund20713' => 'sun', 'Hund20715' => 'sun', 'Lalb_Chr12g0210011' => 'lal', 'Lalb_Chr14g0364821' => 'lal', 'Lj2g0008629' => 'lja', 'Lj4A264G50' => 'lonja', 'Lj9C302G3' => 'lonja', 'LjContig00238g0000416' => 'lja', 'Lsat_1_v5_gn_0_3280' => 'lsa', 'Lsat_1_v5_gn_1_100720' => 'lsa', 'Lsat_1_v5_gn_1_100761' => 'lsa', 'Lsat_1_v5_gn_3_65141' => 'lsa', 'Lsat_1_v5_gn_4_121141' => 'lsa', 'Lsat_1_v5_gn_4_173780' => 'lsa', 'Lsat_1_v5_gn_5_24801' => 'lsa', 'Lsat_1_v5_gn_5_61861' => 'lsa', 'Lsat_1_v5_gn_7_60700' => 'lsa', 'Lsat_1_v5_gn_7_60720' => 'lsa', 'Lsat_1_v5_gn_7_60741' => 'lsa', 'Manes.02G076200' => 'mes', 'Manes.09G005800' => 'mes', 'Mapoly0040s0139' => 'mpo', 'Mapoly0132s0012' => 'mpo', 'MBI11_g24566_MAGBIO' => 'mbi', 'MBI18_g01867_MAGBIO' => 'mbi', 'MBI18_g21798_MAGBIO' => 'mbi', 'MBI18_g21799_MAGBIO' => 'mbi', 'MBI18_g21800_MAGBIO' => 'mbi', 'MCO07G752' => 'mco', 'MCO14G022' => 'mco', 'MD01G1196000' => 'mdo', 'MD03G1000400' => 'mdo', 'MD05G1034800' => 'mdo', 'MD06G1107900' => 'mdo', 'MD07G1262800' => 'mdo', 'MD09G1264300' => 'mdo', 'MD09G1264400' => 'mdo', 'MD15G1255900' => 'mdo', 'MD15G1433500' => 'mdo', 'MD17G1256800' => 'mdo', 'MD17G1258800' => 'mdo', 'MD17G1259600' => 'mdo', 'MD17G1259800' => 'mdo', 'MD17G1260100' => 'mdo', 'Medtr1g101620' => 'mtr', 'Medtr6g027620' => 'mtr', 'MELO3C005366.2' => 'cme', 'MELO3C020199.2' => 'cme', 'Migut.D01299' => 'egut', 'Migut.J00558' => 'egut', 'Migut.J00692' => 'egut', 'Migut.L01675' => 'egut', 'MSTRG.26714' => 'ama', 'MSTRG.4620' => 'ama', 'Nitab4.5_0000203g0010' => 'nta', 'Nitab4.5_0000669g0060' => 'nta', 'Nitab4.5_0001206g0010' => 'nta', 'Nitab4.5_0001206g0020' => 'nta', 'Nitab4.5_0003197g0040' => 'nta', 'Nitab4.5_0004484g0010' => 'nta', 'Nitab4.5_0004729g0010' => 'nta', 'Nitab4.5_0004729g0020' => 'nta', 'Nitab4.5_0008025g0020' => 'nta', 'Nn7g38289' => 'nnu', 'Nn8g40729' => 'nnu', 'Oeu001345.1' => 'oeu', 'Oeu006731.1' => 'oeu', 'Oeu006734.3' => 'oeu', 'Oeu022370.1' => 'oeu', 'Oeu023509.1' => 'oeu', 'Os03g0111700' => 'osa', 'Os03g0335600' => 'osa', 'Os03g0694900' => 'osa', 'Os07g0163500' => 'osa', 'Os10g0506200' => 'osa', 'Peaxi162Scf00057g02721' => 'pax', 'Peaxi162Scf00057g02722' => 'pax', 'Peaxi162Scf00057g02723' => 'pax', 'Peaxi162Scf00079g00089' => 'pax', 'Peaxi162Scf00169g00036' => 'pax', 'Peaxi162Scf00182g00085' => 'pax', 'Peaxi162Scf00182g00086' => 'pax', 'Peaxi162Scf00254g00012' => 'pax', 'Peaxi162Scf00597g00719' => 'pax', 'PGR004G0453' => 'pgr', 'PGR031G0644' => 'pgr', 'PGR031G2005' => 'pgr', 'PGR031G3093' => 'pgr', 'PGR031G3244' => 'pgr', 'PGR031G3606' => 'pgr', 'Phvul.004G073700' => 'pvu', 'Phvul.007G066400' => 'pvu', 'Potri.004G090666' => 'ptr', 'Potri.004G090732' => 'ptr', 'Potri.005G087850' => 'ptr', 'Potri.007G004100' => 'ptr', 'Potri.017G124500' => 'ptr', 'Pp3c12_13790' => 'ppa', 'Pp3c1_36010' => 'ppa', 'Pp3c2_9830' => 'ppa', 'PRCOL_00006335' => 'pco', 'PRCOL_00006948' => 'pco', 'Prupe.1G576900' => 'ppe', 'Prupe.2G289400' => 'ppe', 'Prupe.3G161900' => 'ppe', 'Prupe.3G162000' => 'ppe', 'Psat1g089800' => 'psa', 'Psat6g201440' => 'psa', 'PSO339G4038' => 'pso', 'PSO384G0294' => 'pso', 'PSO478G1977' => 'pso', 'PSO782G2668' => 'pso', 'PSO832G0335' => 'pso', 'PSO832G4571' => 'pso', 'QL06p044842' => 'qlo', 'QL07p019084' => 'qlo', 'QL09p015520' => 'qlo', 'QL09p048218' => 'qlo', 'QL11p048138' => 'qlo', 'QL11p048141' => 'qlo', 'QL11p048148' => 'qlo', 'RcHm_v2.0_Chr1g0328051' => 'rch', 'RcHm_v2.0_Chr1g0376611' => 'rch', 'RcHm_v2.0_Chr2g0151751' => 'rch', 'RcHm_v2.0_Chr2g0151761' => 'rch', 'RcHm_v2.0_Chr5g0049821' => 'rch', 'RcHm_v2.0_Chr5g0066661' => 'rch', 'RcHm_v2.0_Chr7g0182401' => 'rch', 'RcHm_v2.0_Chr7g0218391' => 'rch', 'RcHm_v2.0_Chr7g0218401' => 'rch', 'RcHm_v2.0_Chr7g0218411' => 'rch', 'RcHm_v2.0_Chr7g0232241' => 'rch', 'RcHm_v2.0_Chr7g0232251' => 'rch', 'RcHm_v2.0_Chr7g0232281' => 'rch', 'RcHm_v2.0_Chr7g0232291' => 'rch', 'RcHm_v2.0_Chr7g0232301' => 'rch', 'Rhsim08G0018500' => 'rsi', 'Sabra07G0003000' => 'sbr', 'Sabra17G0105100' => 'sbr', 'SalBow5G1075' => 'sbo', 'Sc07g0001630' => 'sci', 'Sc14g0006490' => 'sci', 'Sed0004659' => 'sed', 'Sed0009589' => 'sed', 'Sed0018333' => 'sed', 'SEGI_00245' => 'sgi', 'SEGI_04262' => 'sgi', 'SEGI_06790' => 'sgi', 'SEGI_08428' => 'sgi', 'SEGI_11941' => 'sgi', 'SEGI_13833' => 'sgi', 'SEGI_14901' => 'sgi', 'SEGI_20814' => 'sgi', 'SEGI_24849' => 'sgi', 'SEGI_27948' => 'sgi', 'SEGI_33021' => 'sgi', 'SGA_v2.0_scaffold35G14149' => 'sas', 'SGA_v2.0_scaffold40G15632' => 'sas', 'SGA_v2.0_scaffold452G51847' => 'sas', 'SHI25544' => 'shi', 'SHI25545' => 'shi', 'SHI25546' => 'shi', 'SHI25547' => 'shi', 'SHI28861' => 'shi', 'SMO165G0098' => 'smo', 'SMO358G0706' => 'smo', 'Solyc09g007540.3' => 'sly', 'Solyc12g019100.2' => 'sly', 'Solyc12g019110.3' => 'sly', 'Sopen09g002410' => 'spe', 'Sopen12g009300' => 'spe', 'Sp1g12970' => 'spa', 'Sp6g27440' => 'spa', 'TAR375G1057' => 'tar', 'TAR375G1109' => 'tar', 'TAR375G1141' => 'tar', 'TAR623G1183' => 'tar', 'TAR629G1395' => 'tar', 'THA.LOC104805109' => 'tha', 'THA.LOC104808369' => 'tha', 'THA.LOC104824111' => 'tha', 'THA.LOC104827192' => 'tha', 'Thecc.04G116700' => 'tca', 'Thecc.07G159900' => 'tca', 'Thecc.09G180600' => 'tca', 'Thhalv10006628m.g' => 'esa', 'Thhalv10006653m.g' => 'esa', 'Thhalv10012577m.g' => 'esa', 'TPR.G17429' => 'tpr', 'TPR.G34728' => 'tpr', 'TPR.G35631' => 'tpr', 'TWI15G0272' => 'twi', 'TWI74G1301' => 'twi', 'TWI81G0741' => 'twi', 'unitig_744.g24676' => 'ugi', 'unitig_749.g13792' => 'ugi', 'vmacro06728' => 'vma', 'vmacro06729' => 'vma', 'vmacro18535' => 'vma', 'VMungo0464G0907' => 'vmu', 'VMungo0464G1730' => 'vmu', 'VMungo0720G1540' => 'vmu', 'Zm00001eb104290' => 'zma', 'Zm00001eb117220' => 'zma', 'Zm00001eb415210' => 'zma', 'Zm00001eb415220' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001392' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001392' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001392' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001392' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001392', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '451', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A06p10670' => 'bna', 'A07p13380' => 'bna', 'A07p13390' => 'bna', 'A08p27330' => 'bna', 'A08p31910' => 'bna', 'A09p61990' => 'bna', 'A10p22510' => 'bna', 'Aa31LG11G12960' => 'aar', 'Aa31LG1G460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3855' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4580' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3387' => 'aag', 'Actinidia23793' => 'ach', 'Actinidia25176' => 'ach', 'Actinidia28813' => 'ach', 'Actinidia28814' => 'ach', 'Actinidia28815' => 'ach', 'Actinidia32900' => 'ach', 'Actinidia32901' => 'ach', 'Actinidia32902' => 'ach', 'Actinidia34075' => 'ach', 'Actinidia34544' => 'ach', 'Actinidia35731' => 'ach', 'Ah.03g134560' => 'amhyb', 'Ah.12g060150' => 'amhyb', 'AL1G26580' => 'aly', 'AL1G38320' => 'aly', 'AL3G41580' => 'aly', 'AL6G27720' => 'aly', 'Aqoxy2G00612' => 'aox', 'Aqoxy2G00887' => 'aox', 'Aqoxy2G00888' => 'aox', 'Aqoxy2G00889' => 'aox', 'Aqoxy2G00890' => 'aox', 'Aqoxy2G03097' => 'aox', 'Aqoxy7G00465' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0T11RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K04UQ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R98RGQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLS2Y4' => 'arhy', 'AT1G14610' => 'ath', 'AT1G27160' => 'ath', 'AT5G16715' => 'ath', 'ATR0697G119' => 'atr', 'ATR0782G056' => 'atr', 'Atru.chr1.1875' => 'acertr', 'AUR62002803' => 'cqu', 'AUR62014110' => 'cqu', 'AUR62014114' => 'cqu', 'AUR62018211' => 'cqu', 'AUR62038698' => 'cqu', 'AUR62038699' => 'cqu', 'BcaB02g06531' => 'bca', 'BcaB03g13091' => 'bca', 'BcaB03g14115' => 'bca', 'BcaB03g14116' => 'bca', 'BcaC04g18858' => 'bca', 'BcaC04g18859' => 'bca', 'BcaC05g25377' => 'bca', 'BcaC06g34238' => 'bca', 'BcaC06g35085' => 'bca', 'BcaC06g35086' => 'bca', 'BcaC07g38749' => 'bca', 'BcaC07g41556' => 'bca', 'BcaNung05660' => 'bca', 'BolC3t19544H' => 'bol', 'BolC5t30002H' => 'bol', 'BolC7t42520H' => 'bol', 'BolC8t49300H' => 'bol', 'BolC8t52110H' => 'bol', 'BolC9t58869H' => 'bol', 'BraA06t24247Z' => 'bra', 'BraA07t29110Z' => 'bra', 'BraA07t29111Z' => 'bra', 'BraA08t34676Z' => 'bra', 'BraA08t35113Z' => 'bra', 'BraA09t41562Z' => 'bra', 'BraA10t44310Z' => 'bra', 'C05p12580' => 'bna', 'C07p20010' => 'bna', 'C08p16790' => 'bna', 'C08p45570' => 'bna', 'C09p60360' => 'bna', 'CAN.G1091.5' => 'can', 'CAN.G207.6' => 'can', 'CAN.G703.8' => 'can', 'CANSAT56G1922' => 'cansat', 'CANSAT56G2795' => 'cansat', 'CANSAT71G0007' => 'cansat', 'CARHR015110' => 'chi', 'CARHR024700' => 'chi', 'CARHR024710' => 'chi', 'CARHR144600' => 'chi', 'CARHR196470' => 'chi', 'CARHR260940' => 'chi', 'Carub.0001s1437' => 'cru', 'Carub.0001s3391' => 'cru', 'Carub.0005s0101' => 'cru', 'Carub.0006s1493' => 'cru', 'Ca_10801_v3' => 'car', 'Ca_25679_v3' => 'car', 'CBR_g31285' => 'cbr', 'CBR_g4483' => 'cbr', 'CBR_g88870' => 'cbr', 'Cc06_g03770' => 'ccan', 'CDE08G1587' => 'cde', 'CDE10G1341' => 'cde', 'Cfa008272' => 'cfa', 'Cfa017719' => 'cfa', 'Cfa021716' => 'cfa', 'Ciclev10004208m.g' => 'ccl', 'Ciclev10010998m.g' => 'ccl', 'CiPaw.04G068200' => 'cil', 'CiPaw.09G167000' => 'cil', 'CiPaw.09G167100' => 'cil', 'ClCG01G005670' => 'cla', 'ClCG01G005680' => 'cla', 'ClCG05G011510' => 'cla', 'COL.COLO4_04102' => 'col', 'COL.COLO4_09038' => 'col', 'COL.COLO4_09039' => 'col', 'COL.COLO4_25471' => 'col', 'COL.COLO4_31125' => 'col', 'Cpa.g.sc116.46' => 'cpa', 'Cpa.g.sc2.74' => 'cpa', 'Cre07.g350500' => 'cre', 'Cre12.g537100' => 'cre', 'CsaV3_3G020830' => 'csa', 'CsaV3_5G005900' => 'csa', 'CSS0004873' => 'camsi', 'CSS0005968' => 'camsi', 'CSS0006913' => 'camsi', 'CSS0026523' => 'camsi', 'CSS0030571' => 'camsi', 'DCAR_003434' => 'dca', 'DCAR_020225' => 'dca', 'Dinv19030' => 'din', 'Dinv31233' => 'din', 'Dinv36391' => 'din', 'Duzib133G1570' => 'dzi', 'Duzib170G0790' => 'dzi', 'ECA240G1446' => 'eca', 'ECA240G2105' => 'eca', 'ECA246G3910' => 'eca', 'EL10Ac2g03165' => 'bvu', 'EL10Ac5g11700' => 'bvu', 'EL10Ac8g19565' => 'bvu', 'Eucgr.E01106' => 'egr', 'Eucgr.F02848' => 'egr', 'Eucgr.F04425' => 'egr', 'FAN01G1271' => 'fan', 'FAN01G1312' => 'fan', 'FAN03G0802' => 'fan', 'FAN03G1076' => 'fan', 'FAN03G1326' => 'fan', 'FAN03G1857' => 'fan', 'FAN06G0336' => 'fan', 'FAN06G0463' => 'fan', 'FAN06G1244' => 'fan', 'FAN06G3412' => 'fan', 'FAN06G3456' => 'fan', 'FAN10G1869' => 'fan', 'FAN10G3015' => 'fan', 'FAN13G1017' => 'fan', 'FAN18G4114' => 'fan', 'FAN23G3091' => 'fan', 'FvH4_5g33250' => 'fve', 'FvH4_7g01700' => 'fve', 'FvH4_7g04130' => 'fve', 'FvH4_7g28901' => 'fve', 'FvH4_7g28940' => 'fve', 'Glyma.05G089050' => 'gma', 'Glyma.10G239500' => 'gma', 'Glyma.17G186800' => 'gma', 'Glyma.17G186900' => 'gma', 'Glyma.17G187000' => 'gma', 'Glyma.18G051300' => 'gma', 'Glyma.20G155000' => 'gma', 'Gohir.A01G231880' => 'ghi', 'Gohir.A08G018000' => 'ghi', 'Gohir.A08G253800' => 'ghi', 'Gohir.A10G243050' => 'ghi', 'Gohir.A12G276975' => 'ghi', 'Gohir.A12G277201' => 'ghi', 'Gohir.D01G140701' => 'ghi', 'Gohir.D01G222000' => 'ghi', 'Gohir.D03G178350' => 'ghi', 'Gohir.D07G000261' => 'ghi', 'Gohir.D07G000800' => 'ghi', 'Gohir.D08G028600' => 'ghi', 'Gohir.D08G275314' => 'ghi', 'Gohir.D09G073701' => 'ghi', 'Gohir.D10G255000' => 'ghi', 'Gohir.D11G349100' => 'ghi', 'Gohir.D11G349400' => 'ghi', 'Gohir.D12G131400' => 'ghi', 'Gohir.D12G141700' => 'ghi', 'Gorai.002G000100' => 'gra', 'Gorai.002G172800' => 'gra', 'Gorai.002G268700' => 'gra', 'Gorai.004G025700' => 'gra', 'Gorai.005G269400' => 'gra', 'Gorai.005G269600' => 'gra', 'Gorai.005G269800' => 'gra', 'Gorai.006G101900' => 'gra', 'Gorai.006G274700' => 'gra', 'Gorai.007G000600' => 'gra', 'Gorai.007G379600' => 'gra', 'Gorai.008G142700' => 'gra', 'Gorai.008G153100' => 'gra', 'Gorai.008G298700' => 'gra', 'Gorai.008G298900' => 'gra', 'Gorai.011G000300' => 'gra', 'Gorai.011G296000' => 'gra', 'Gorai.N015700' => 'gra', 'GSVIVG01010632001' => 'vvi', 'GSVIVG01010703001' => 'vvi', 'GSVIVG01027222001' => 'vvi', 'GSVIVG01030775001' => 'vvi', 'GSVIVG01030776001' => 'vvi', 'HanXRQChr03g0071441' => 'han', 'HanXRQChr07g0197731' => 'han', 'HanXRQChr10g0283681' => 'han', 'HanXRQChr14g0461381' => 'han', 'Haze_10572' => 'cav', 'Haze_13765' => 'cav', 'Haze_13766' => 'cav', 'Haze_13767' => 'cav', 'Haze_20419' => 'cav', 'Haze_26620' => 'cav', 'Hma1.2p1_0524F.1_g172340' => 'hma', 'Hma1.2p1_0524F.1_g172350' => 'hma', 'Hma1.2p1_0524F.1_g172360' => 'hma', 'Hma1.2p1_0524F.1_g172370' => 'hma', 'Hma1.2p1_1840F.1_g304930' => 'hma', 'Hma1.2p1_1840F.1_g304940' => 'hma', 'HPP92_000859' => 'vpl', 'HPP92_000860' => 'vpl', 'HPP92_000864' => 'vpl', 'HPP92_001073' => 'vpl', 'HPP92_001074' => 'vpl', 'Hund13115' => 'sun', 'Hund20713' => 'sun', 'Hund20715' => 'sun', 'Lalb_Chr12g0210011' => 'lal', 'Lalb_Chr14g0364821' => 'lal', 'Lj2g0008629' => 'lja', 'Lj4A264G50' => 'lonja', 'Lj9C302G3' => 'lonja', 'LjContig00238g0000416' => 'lja', 'Lsat_1_v5_gn_0_3280' => 'lsa', 'Lsat_1_v5_gn_1_100720' => 'lsa', 'Lsat_1_v5_gn_1_100761' => 'lsa', 'Lsat_1_v5_gn_3_65141' => 'lsa', 'Lsat_1_v5_gn_4_121141' => 'lsa', 'Lsat_1_v5_gn_4_173780' => 'lsa', 'Lsat_1_v5_gn_5_24801' => 'lsa', 'Lsat_1_v5_gn_5_61861' => 'lsa', 'Lsat_1_v5_gn_7_60700' => 'lsa', 'Lsat_1_v5_gn_7_60720' => 'lsa', 'Lsat_1_v5_gn_7_60741' => 'lsa', 'Manes.02G076200' => 'mes', 'Manes.09G005800' => 'mes', 'Mapoly0040s0139' => 'mpo', 'Mapoly0132s0012' => 'mpo', 'MBI11_g24566_MAGBIO' => 'mbi', 'MBI18_g01867_MAGBIO' => 'mbi', 'MBI18_g21798_MAGBIO' => 'mbi', 'MBI18_g21799_MAGBIO' => 'mbi', 'MBI18_g21800_MAGBIO' => 'mbi', 'MCO07G752' => 'mco', 'MCO14G022' => 'mco', 'MD01G1196000' => 'mdo', 'MD03G1000400' => 'mdo', 'MD05G1034800' => 'mdo', 'MD06G1107900' => 'mdo', 'MD07G1262800' => 'mdo', 'MD09G1264300' => 'mdo', 'MD09G1264400' => 'mdo', 'MD15G1255900' => 'mdo', 'MD15G1433500' => 'mdo', 'MD17G1256800' => 'mdo', 'MD17G1258800' => 'mdo', 'MD17G1259600' => 'mdo', 'MD17G1259800' => 'mdo', 'MD17G1260100' => 'mdo', 'Medtr1g101620' => 'mtr', 'Medtr6g027620' => 'mtr', 'MELO3C005366.2' => 'cme', 'MELO3C020199.2' => 'cme', 'Migut.D01299' => 'egut', 'Migut.J00558' => 'egut', 'Migut.J00692' => 'egut', 'Migut.L01675' => 'egut', 'MSTRG.26714' => 'ama', 'MSTRG.4620' => 'ama', 'Nitab4.5_0000203g0010' => 'nta', 'Nitab4.5_0000669g0060' => 'nta', 'Nitab4.5_0001206g0010' => 'nta', 'Nitab4.5_0001206g0020' => 'nta', 'Nitab4.5_0003197g0040' => 'nta', 'Nitab4.5_0004484g0010' => 'nta', 'Nitab4.5_0004729g0010' => 'nta', 'Nitab4.5_0004729g0020' => 'nta', 'Nitab4.5_0008025g0020' => 'nta', 'Nn7g38289' => 'nnu', 'Nn8g40729' => 'nnu', 'Oeu001345.1' => 'oeu', 'Oeu006731.1' => 'oeu', 'Oeu006734.3' => 'oeu', 'Oeu022370.1' => 'oeu', 'Oeu023509.1' => 'oeu', 'Os03g0111700' => 'osa', 'Os03g0335600' => 'osa', 'Os03g0694900' => 'osa', 'Os07g0163500' => 'osa', 'Os10g0506200' => 'osa', 'Peaxi162Scf00057g02721' => 'pax', 'Peaxi162Scf00057g02722' => 'pax', 'Peaxi162Scf00057g02723' => 'pax', 'Peaxi162Scf00079g00089' => 'pax', 'Peaxi162Scf00169g00036' => 'pax', 'Peaxi162Scf00182g00085' => 'pax', 'Peaxi162Scf00182g00086' => 'pax', 'Peaxi162Scf00254g00012' => 'pax', 'Peaxi162Scf00597g00719' => 'pax', 'PGR004G0453' => 'pgr', 'PGR031G0644' => 'pgr', 'PGR031G2005' => 'pgr', 'PGR031G3093' => 'pgr', 'PGR031G3244' => 'pgr', 'PGR031G3606' => 'pgr', 'Phvul.004G073700' => 'pvu', 'Phvul.007G066400' => 'pvu', 'Potri.004G090666' => 'ptr', 'Potri.004G090732' => 'ptr', 'Potri.005G087850' => 'ptr', 'Potri.007G004100' => 'ptr', 'Potri.017G124500' => 'ptr', 'Pp3c12_13790' => 'ppa', 'Pp3c1_36010' => 'ppa', 'Pp3c2_9830' => 'ppa', 'PRCOL_00006335' => 'pco', 'PRCOL_00006948' => 'pco', 'Prupe.1G576900' => 'ppe', 'Prupe.2G289400' => 'ppe', 'Prupe.3G161900' => 'ppe', 'Prupe.3G162000' => 'ppe', 'Psat1g089800' => 'psa', 'Psat6g201440' => 'psa', 'PSO339G4038' => 'pso', 'PSO384G0294' => 'pso', 'PSO478G1977' => 'pso', 'PSO782G2668' => 'pso', 'PSO832G0335' => 'pso', 'PSO832G4571' => 'pso', 'QL06p044842' => 'qlo', 'QL07p019084' => 'qlo', 'QL09p015520' => 'qlo', 'QL09p048218' => 'qlo', 'QL11p048138' => 'qlo', 'QL11p048141' => 'qlo', 'QL11p048148' => 'qlo', 'RcHm_v2.0_Chr1g0328051' => 'rch', 'RcHm_v2.0_Chr1g0376611' => 'rch', 'RcHm_v2.0_Chr2g0151751' => 'rch', 'RcHm_v2.0_Chr2g0151761' => 'rch', 'RcHm_v2.0_Chr5g0049821' => 'rch', 'RcHm_v2.0_Chr5g0066661' => 'rch', 'RcHm_v2.0_Chr7g0182401' => 'rch', 'RcHm_v2.0_Chr7g0218391' => 'rch', 'RcHm_v2.0_Chr7g0218401' => 'rch', 'RcHm_v2.0_Chr7g0218411' => 'rch', 'RcHm_v2.0_Chr7g0232241' => 'rch', 'RcHm_v2.0_Chr7g0232251' => 'rch', 'RcHm_v2.0_Chr7g0232281' => 'rch', 'RcHm_v2.0_Chr7g0232291' => 'rch', 'RcHm_v2.0_Chr7g0232301' => 'rch', 'Rhsim08G0018500' => 'rsi', 'Sabra07G0003000' => 'sbr', 'Sabra17G0105100' => 'sbr', 'SalBow5G1075' => 'sbo', 'Sc07g0001630' => 'sci', 'Sc14g0006490' => 'sci', 'Sed0004659' => 'sed', 'Sed0009589' => 'sed', 'Sed0018333' => 'sed', 'SEGI_00245' => 'sgi', 'SEGI_04262' => 'sgi', 'SEGI_06790' => 'sgi', 'SEGI_08428' => 'sgi', 'SEGI_11941' => 'sgi', 'SEGI_13833' => 'sgi', 'SEGI_14901' => 'sgi', 'SEGI_20814' => 'sgi', 'SEGI_24849' => 'sgi', 'SEGI_27948' => 'sgi', 'SEGI_33021' => 'sgi', 'SGA_v2.0_scaffold35G14149' => 'sas', 'SGA_v2.0_scaffold40G15632' => 'sas', 'SGA_v2.0_scaffold452G51847' => 'sas', 'SHI25544' => 'shi', 'SHI25545' => 'shi', 'SHI25546' => 'shi', 'SHI25547' => 'shi', 'SHI28861' => 'shi', 'SMO165G0098' => 'smo', 'SMO358G0706' => 'smo', 'Solyc09g007540.3' => 'sly', 'Solyc12g019100.2' => 'sly', 'Solyc12g019110.3' => 'sly', 'Sopen09g002410' => 'spe', 'Sopen12g009300' => 'spe', 'Sp1g12970' => 'spa', 'Sp6g27440' => 'spa', 'TAR375G1057' => 'tar', 'TAR375G1109' => 'tar', 'TAR375G1141' => 'tar', 'TAR623G1183' => 'tar', 'TAR629G1395' => 'tar', 'THA.LOC104805109' => 'tha', 'THA.LOC104808369' => 'tha', 'THA.LOC104824111' => 'tha', 'THA.LOC104827192' => 'tha', 'Thecc.04G116700' => 'tca', 'Thecc.07G159900' => 'tca', 'Thecc.09G180600' => 'tca', 'Thhalv10006628m.g' => 'esa', 'Thhalv10006653m.g' => 'esa', 'Thhalv10012577m.g' => 'esa', 'TPR.G17429' => 'tpr', 'TPR.G34728' => 'tpr', 'TPR.G35631' => 'tpr', 'TWI15G0272' => 'twi', 'TWI74G1301' => 'twi', 'TWI81G0741' => 'twi', 'unitig_744.g24676' => 'ugi', 'unitig_749.g13792' => 'ugi', 'vmacro06728' => 'vma', 'vmacro06729' => 'vma', 'vmacro18535' => 'vma', 'VMungo0464G0907' => 'vmu', 'VMungo0464G1730' => 'vmu', 'VMungo0720G1540' => 'vmu', 'Zm00001eb104290' => 'zma', 'Zm00001eb117220' => 'zma', 'Zm00001eb415210' => 'zma', 'Zm00001eb415220' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001392', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001392' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001392', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '451', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001392' ) ), 'genes' => array( 'A06p10670' => 'bna', 'A07p13380' => 'bna', 'A07p13390' => 'bna', 'A08p27330' => 'bna', 'A08p31910' => 'bna', 'A09p61990' => 'bna', 'A10p22510' => 'bna', 'Aa31LG11G12960' => 'aar', 'Aa31LG1G460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3855' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2529' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4580' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3387' => 'aag', 'Actinidia23793' => 'ach', 'Actinidia25176' => 'ach', 'Actinidia28813' => 'ach', 'Actinidia28814' => 'ach', 'Actinidia28815' => 'ach', 'Actinidia32900' => 'ach', 'Actinidia32901' => 'ach', 'Actinidia32902' => 'ach', 'Actinidia34075' => 'ach', 'Actinidia34544' => 'ach', 'Actinidia35731' => 'ach', 'Ah.03g134560' => 'amhyb', 'Ah.12g060150' => 'amhyb', 'AL1G26580' => 'aly', 'AL1G38320' => 'aly', 'AL3G41580' => 'aly', 'AL6G27720' => 'aly', 'Aqoxy2G00612' => 'aox', 'Aqoxy2G00887' => 'aox', 'Aqoxy2G00888' => 'aox', 'Aqoxy2G00889' => 'aox', 'Aqoxy2G00890' => 'aox', 'Aqoxy2G03097' => 'aox', 'Aqoxy7G00465' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0T11RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K04UQ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R98RGQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLS2Y4' => 'arhy', 'AT1G14610' => 'ath', 'AT1G27160' => 'ath', 'AT5G16715' => 'ath', 'ATR0697G119' => 'atr', 'ATR0782G056' => 'atr', 'Atru.chr1.1875' => 'acertr', 'AUR62002803' => 'cqu', 'AUR62014110' => 'cqu', 'AUR62014114' => 'cqu', 'AUR62018211' => 'cqu', 'AUR62038698' => 'cqu', 'AUR62038699' => 'cqu', 'BcaB02g06531' => 'bca', 'BcaB03g13091' => 'bca', 'BcaB03g14115' => 'bca', 'BcaB03g14116' => 'bca', 'BcaC04g18858' => 'bca', 'BcaC04g18859' => 'bca', 'BcaC05g25377' => 'bca', 'BcaC06g34238' => 'bca', 'BcaC06g35085' => 'bca', 'BcaC06g35086' => 'bca', 'BcaC07g38749' => 'bca', 'BcaC07g41556' => 'bca', 'BcaNung05660' => 'bca', 'BolC3t19544H' => 'bol', 'BolC5t30002H' => 'bol', 'BolC7t42520H' => 'bol', 'BolC8t49300H' => 'bol', 'BolC8t52110H' => 'bol', 'BolC9t58869H' => 'bol', 'BraA06t24247Z' => 'bra', 'BraA07t29110Z' => 'bra', 'BraA07t29111Z' => 'bra', 'BraA08t34676Z' => 'bra', 'BraA08t35113Z' => 'bra', 'BraA09t41562Z' => 'bra', 'BraA10t44310Z' => 'bra', 'C05p12580' => 'bna', 'C07p20010' => 'bna', 'C08p16790' => 'bna', 'C08p45570' => 'bna', 'C09p60360' => 'bna', 'CAN.G1091.5' => 'can', 'CAN.G207.6' => 'can', 'CAN.G703.8' => 'can', 'CANSAT56G1922' => 'cansat', 'CANSAT56G2795' => 'cansat', 'CANSAT71G0007' => 'cansat', 'CARHR015110' => 'chi', 'CARHR024700' => 'chi', 'CARHR024710' => 'chi', 'CARHR144600' => 'chi', 'CARHR196470' => 'chi', 'CARHR260940' => 'chi', 'Carub.0001s1437' => 'cru', 'Carub.0001s3391' => 'cru', 'Carub.0005s0101' => 'cru', 'Carub.0006s1493' => 'cru', 'Ca_10801_v3' => 'car', 'Ca_25679_v3' => 'car', 'CBR_g31285' => 'cbr', 'CBR_g4483' => 'cbr', 'CBR_g88870' => 'cbr', 'Cc06_g03770' => 'ccan', 'CDE08G1587' => 'cde', 'CDE10G1341' => 'cde', 'Cfa008272' => 'cfa', 'Cfa017719' => 'cfa', 'Cfa021716' => 'cfa', 'Ciclev10004208m.g' => 'ccl', 'Ciclev10010998m.g' => 'ccl', 'CiPaw.04G068200' => 'cil', 'CiPaw.09G167000' => 'cil', 'CiPaw.09G167100' => 'cil', 'ClCG01G005670' => 'cla', 'ClCG01G005680' => 'cla', 'ClCG05G011510' => 'cla', 'COL.COLO4_04102' => 'col', 'COL.COLO4_09038' => 'col', 'COL.COLO4_09039' => 'col', 'COL.COLO4_25471' => 'col', 'COL.COLO4_31125' => 'col', 'Cpa.g.sc116.46' => 'cpa', 'Cpa.g.sc2.74' => 'cpa', 'Cre07.g350500' => 'cre', 'Cre12.g537100' => 'cre', 'CsaV3_3G020830' => 'csa', 'CsaV3_5G005900' => 'csa', 'CSS0004873' => 'camsi', 'CSS0005968' => 'camsi', 'CSS0006913' => 'camsi', 'CSS0026523' => 'camsi', 'CSS0030571' => 'camsi', 'DCAR_003434' => 'dca', 'DCAR_020225' => 'dca', 'Dinv19030' => 'din', 'Dinv31233' => 'din', 'Dinv36391' => 'din', 'Duzib133G1570' => 'dzi', 'Duzib170G0790' => 'dzi', 'ECA240G1446' => 'eca', 'ECA240G2105' => 'eca', 'ECA246G3910' => 'eca', 'EL10Ac2g03165' => 'bvu', 'EL10Ac5g11700' => 'bvu', 'EL10Ac8g19565' => 'bvu', 'Eucgr.E01106' => 'egr', 'Eucgr.F02848' => 'egr', 'Eucgr.F04425' => 'egr', 'FAN01G1271' => 'fan', 'FAN01G1312' => 'fan', 'FAN03G0802' => 'fan', 'FAN03G1076' => 'fan', 'FAN03G1326' => 'fan', 'FAN03G1857' => 'fan', 'FAN06G0336' => 'fan', 'FAN06G0463' => 'fan', 'FAN06G1244' => 'fan', 'FAN06G3412' => 'fan', 'FAN06G3456' => 'fan', 'FAN10G1869' => 'fan', 'FAN10G3015' => 'fan', 'FAN13G1017' => 'fan', 'FAN18G4114' => 'fan', 'FAN23G3091' => 'fan', 'FvH4_5g33250' => 'fve', 'FvH4_7g01700' => 'fve', 'FvH4_7g04130' => 'fve', 'FvH4_7g28901' => 'fve', 'FvH4_7g28940' => 'fve', 'Glyma.05G089050' => 'gma', 'Glyma.10G239500' => 'gma', 'Glyma.17G186800' => 'gma', 'Glyma.17G186900' => 'gma', 'Glyma.17G187000' => 'gma', 'Glyma.18G051300' => 'gma', 'Glyma.20G155000' => 'gma', 'Gohir.A01G231880' => 'ghi', 'Gohir.A08G018000' => 'ghi', 'Gohir.A08G253800' => 'ghi', 'Gohir.A10G243050' => 'ghi', 'Gohir.A12G276975' => 'ghi', 'Gohir.A12G277201' => 'ghi', 'Gohir.D01G140701' => 'ghi', 'Gohir.D01G222000' => 'ghi', 'Gohir.D03G178350' => 'ghi', 'Gohir.D07G000261' => 'ghi', 'Gohir.D07G000800' => 'ghi', 'Gohir.D08G028600' => 'ghi', 'Gohir.D08G275314' => 'ghi', 'Gohir.D09G073701' => 'ghi', 'Gohir.D10G255000' => 'ghi', 'Gohir.D11G349100' => 'ghi', 'Gohir.D11G349400' => 'ghi', 'Gohir.D12G131400' => 'ghi', 'Gohir.D12G141700' => 'ghi', 'Gorai.002G000100' => 'gra', 'Gorai.002G172800' => 'gra', 'Gorai.002G268700' => 'gra', 'Gorai.004G025700' => 'gra', 'Gorai.005G269400' => 'gra', 'Gorai.005G269600' => 'gra', 'Gorai.005G269800' => 'gra', 'Gorai.006G101900' => 'gra', 'Gorai.006G274700' => 'gra', 'Gorai.007G000600' => 'gra', 'Gorai.007G379600' => 'gra', 'Gorai.008G142700' => 'gra', 'Gorai.008G153100' => 'gra', 'Gorai.008G298700' => 'gra', 'Gorai.008G298900' => 'gra', 'Gorai.011G000300' => 'gra', 'Gorai.011G296000' => 'gra', 'Gorai.N015700' => 'gra', 'GSVIVG01010632001' => 'vvi', 'GSVIVG01010703001' => 'vvi', 'GSVIVG01027222001' => 'vvi', 'GSVIVG01030775001' => 'vvi', 'GSVIVG01030776001' => 'vvi', 'HanXRQChr03g0071441' => 'han', 'HanXRQChr07g0197731' => 'han', 'HanXRQChr10g0283681' => 'han', 'HanXRQChr14g0461381' => 'han', 'Haze_10572' => 'cav', 'Haze_13765' => 'cav', 'Haze_13766' => 'cav', 'Haze_13767' => 'cav', 'Haze_20419' => 'cav', 'Haze_26620' => 'cav', 'Hma1.2p1_0524F.1_g172340' => 'hma', 'Hma1.2p1_0524F.1_g172350' => 'hma', 'Hma1.2p1_0524F.1_g172360' => 'hma', 'Hma1.2p1_0524F.1_g172370' => 'hma', 'Hma1.2p1_1840F.1_g304930' => 'hma', 'Hma1.2p1_1840F.1_g304940' => 'hma', 'HPP92_000859' => 'vpl', 'HPP92_000860' => 'vpl', 'HPP92_000864' => 'vpl', 'HPP92_001073' => 'vpl', 'HPP92_001074' => 'vpl', 'Hund13115' => 'sun', 'Hund20713' => 'sun', 'Hund20715' => 'sun', 'Lalb_Chr12g0210011' => 'lal', 'Lalb_Chr14g0364821' => 'lal', 'Lj2g0008629' => 'lja', 'Lj4A264G50' => 'lonja', 'Lj9C302G3' => 'lonja', 'LjContig00238g0000416' => 'lja', 'Lsat_1_v5_gn_0_3280' => 'lsa', 'Lsat_1_v5_gn_1_100720' => 'lsa', 'Lsat_1_v5_gn_1_100761' => 'lsa', 'Lsat_1_v5_gn_3_65141' => 'lsa', 'Lsat_1_v5_gn_4_121141' => 'lsa', 'Lsat_1_v5_gn_4_173780' => 'lsa', 'Lsat_1_v5_gn_5_24801' => 'lsa', 'Lsat_1_v5_gn_5_61861' => 'lsa', 'Lsat_1_v5_gn_7_60700' => 'lsa', 'Lsat_1_v5_gn_7_60720' => 'lsa', 'Lsat_1_v5_gn_7_60741' => 'lsa', 'Manes.02G076200' => 'mes', 'Manes.09G005800' => 'mes', 'Mapoly0040s0139' => 'mpo', 'Mapoly0132s0012' => 'mpo', 'MBI11_g24566_MAGBIO' => 'mbi', 'MBI18_g01867_MAGBIO' => 'mbi', 'MBI18_g21798_MAGBIO' => 'mbi', 'MBI18_g21799_MAGBIO' => 'mbi', 'MBI18_g21800_MAGBIO' => 'mbi', 'MCO07G752' => 'mco', 'MCO14G022' => 'mco', 'MD01G1196000' => 'mdo', 'MD03G1000400' => 'mdo', 'MD05G1034800' => 'mdo', 'MD06G1107900' => 'mdo', 'MD07G1262800' => 'mdo', 'MD09G1264300' => 'mdo', 'MD09G1264400' => 'mdo', 'MD15G1255900' => 'mdo', 'MD15G1433500' => 'mdo', 'MD17G1256800' => 'mdo', 'MD17G1258800' => 'mdo', 'MD17G1259600' => 'mdo', 'MD17G1259800' => 'mdo', 'MD17G1260100' => 'mdo', 'Medtr1g101620' => 'mtr', 'Medtr6g027620' => 'mtr', 'MELO3C005366.2' => 'cme', 'MELO3C020199.2' => 'cme', 'Migut.D01299' => 'egut', 'Migut.J00558' => 'egut', 'Migut.J00692' => 'egut', 'Migut.L01675' => 'egut', 'MSTRG.26714' => 'ama', 'MSTRG.4620' => 'ama', 'Nitab4.5_0000203g0010' => 'nta', 'Nitab4.5_0000669g0060' => 'nta', 'Nitab4.5_0001206g0010' => 'nta', 'Nitab4.5_0001206g0020' => 'nta', 'Nitab4.5_0003197g0040' => 'nta', 'Nitab4.5_0004484g0010' => 'nta', 'Nitab4.5_0004729g0010' => 'nta', 'Nitab4.5_0004729g0020' => 'nta', 'Nitab4.5_0008025g0020' => 'nta', 'Nn7g38289' => 'nnu', 'Nn8g40729' => 'nnu', 'Oeu001345.1' => 'oeu', 'Oeu006731.1' => 'oeu', 'Oeu006734.3' => 'oeu', 'Oeu022370.1' => 'oeu', 'Oeu023509.1' => 'oeu', 'Os03g0111700' => 'osa', 'Os03g0335600' => 'osa', 'Os03g0694900' => 'osa', 'Os07g0163500' => 'osa', 'Os10g0506200' => 'osa', 'Peaxi162Scf00057g02721' => 'pax', 'Peaxi162Scf00057g02722' => 'pax', 'Peaxi162Scf00057g02723' => 'pax', 'Peaxi162Scf00079g00089' => 'pax', 'Peaxi162Scf00169g00036' => 'pax', 'Peaxi162Scf00182g00085' => 'pax', 'Peaxi162Scf00182g00086' => 'pax', 'Peaxi162Scf00254g00012' => 'pax', 'Peaxi162Scf00597g00719' => 'pax', 'PGR004G0453' => 'pgr', 'PGR031G0644' => 'pgr', 'PGR031G2005' => 'pgr', 'PGR031G3093' => 'pgr', 'PGR031G3244' => 'pgr', 'PGR031G3606' => 'pgr', 'Phvul.004G073700' => 'pvu', 'Phvul.007G066400' => 'pvu', 'Potri.004G090666' => 'ptr', 'Potri.004G090732' => 'ptr', 'Potri.005G087850' => 'ptr', 'Potri.007G004100' => 'ptr', 'Potri.017G124500' => 'ptr', 'Pp3c12_13790' => 'ppa', 'Pp3c1_36010' => 'ppa', 'Pp3c2_9830' => 'ppa', 'PRCOL_00006335' => 'pco', 'PRCOL_00006948' => 'pco', 'Prupe.1G576900' => 'ppe', 'Prupe.2G289400' => 'ppe', 'Prupe.3G161900' => 'ppe', 'Prupe.3G162000' => 'ppe', 'Psat1g089800' => 'psa', 'Psat6g201440' => 'psa', 'PSO339G4038' => 'pso', 'PSO384G0294' => 'pso', 'PSO478G1977' => 'pso', 'PSO782G2668' => 'pso', 'PSO832G0335' => 'pso', 'PSO832G4571' => 'pso', 'QL06p044842' => 'qlo', 'QL07p019084' => 'qlo', 'QL09p015520' => 'qlo', 'QL09p048218' => 'qlo', 'QL11p048138' => 'qlo', 'QL11p048141' => 'qlo', 'QL11p048148' => 'qlo', 'RcHm_v2.0_Chr1g0328051' => 'rch', 'RcHm_v2.0_Chr1g0376611' => 'rch', 'RcHm_v2.0_Chr2g0151751' => 'rch', 'RcHm_v2.0_Chr2g0151761' => 'rch', 'RcHm_v2.0_Chr5g0049821' => 'rch', 'RcHm_v2.0_Chr5g0066661' => 'rch', 'RcHm_v2.0_Chr7g0182401' => 'rch', 'RcHm_v2.0_Chr7g0218391' => 'rch', 'RcHm_v2.0_Chr7g0218401' => 'rch', 'RcHm_v2.0_Chr7g0218411' => 'rch', 'RcHm_v2.0_Chr7g0232241' => 'rch', 'RcHm_v2.0_Chr7g0232251' => 'rch', 'RcHm_v2.0_Chr7g0232281' => 'rch', 'RcHm_v2.0_Chr7g0232291' => 'rch', 'RcHm_v2.0_Chr7g0232301' => 'rch', 'Rhsim08G0018500' => 'rsi', 'Sabra07G0003000' => 'sbr', 'Sabra17G0105100' => 'sbr', 'SalBow5G1075' => 'sbo', 'Sc07g0001630' => 'sci', 'Sc14g0006490' => 'sci', 'Sed0004659' => 'sed', 'Sed0009589' => 'sed', 'Sed0018333' => 'sed', 'SEGI_00245' => 'sgi', 'SEGI_04262' => 'sgi', 'SEGI_06790' => 'sgi', 'SEGI_08428' => 'sgi', 'SEGI_11941' => 'sgi', 'SEGI_13833' => 'sgi', 'SEGI_14901' => 'sgi', 'SEGI_20814' => 'sgi', 'SEGI_24849' => 'sgi', 'SEGI_27948' => 'sgi', 'SEGI_33021' => 'sgi', 'SGA_v2.0_scaffold35G14149' => 'sas', 'SGA_v2.0_scaffold40G15632' => 'sas', 'SGA_v2.0_scaffold452G51847' => 'sas', 'SHI25544' => 'shi', 'SHI25545' => 'shi', 'SHI25546' => 'shi', 'SHI25547' => 'shi', 'SHI28861' => 'shi', 'SMO165G0098' => 'smo', 'SMO358G0706' => 'smo', 'Solyc09g007540.3' => 'sly', 'Solyc12g019100.2' => 'sly', 'Solyc12g019110.3' => 'sly', 'Sopen09g002410' => 'spe', 'Sopen12g009300' => 'spe', 'Sp1g12970' => 'spa', 'Sp6g27440' => 'spa', 'TAR375G1057' => 'tar', 'TAR375G1109' => 'tar', 'TAR375G1141' => 'tar', 'TAR623G1183' => 'tar', 'TAR629G1395' => 'tar', 'THA.LOC104805109' => 'tha', 'THA.LOC104808369' => 'tha', 'THA.LOC104824111' => 'tha', 'THA.LOC104827192' => 'tha', 'Thecc.04G116700' => 'tca', 'Thecc.07G159900' => 'tca', 'Thecc.09G180600' => 'tca', 'Thhalv10006628m.g' => 'esa', 'Thhalv10006653m.g' => 'esa', 'Thhalv10012577m.g' => 'esa', 'TPR.G17429' => 'tpr', 'TPR.G34728' => 'tpr', 'TPR.G35631' => 'tpr', 'TWI15G0272' => 'twi', 'TWI74G1301' => 'twi', 'TWI81G0741' => 'twi', 'unitig_744.g24676' => 'ugi', 'unitig_749.g13792' => 'ugi', 'vmacro06728' => 'vma', 'vmacro06729' => 'vma', 'vmacro18535' => 'vma', 'VMungo0464G0907' => 'vmu', 'VMungo0464G1730' => 'vmu', 'VMungo0720G1540' => 'vmu', 'Zm00001eb104290' => 'zma', 'Zm00001eb117220' => 'zma', 'Zm00001eb415210' => 'zma', 'Zm00001eb415220' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001392' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001392' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001392' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001392' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151