Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 1.9e-231 805.4 392 100.0
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.7e-113 412.9 389 52.2
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 3.7e-110 402.5 380 51.8
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 3.1e-109 399.4 380 51.3
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 2.2e-107 393.3 385 51.2
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 3.8e-107 392.5 381 51.4
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 2.5e-106 389.8 389 52.2
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 4.2e-106 389.0 386 51.8
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 5.5e-106 388.7 385 51.2
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 7.2e-106 388.3 385 49.9
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 7.2e-106 388.3 385 49.9
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 9.3e-106 387.9 383 50.1
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 1.2e-105 387.5 389 50.1
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 3.6e-105 386.0 385 51.4
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 3.6e-105 386.0 381 49.6
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 4.6e-105 385.6 385 50.6
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 4.6e-105 385.6 385 51.4
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 6.1e-105 385.2 391 49.9
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 7.9e-105 384.8 384 50.8
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 7.9e-105 384.8 383 50.7
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 1.0e-104 384.4 391 48.8
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.8e-104 383.6 388 50.8
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 1.8e-104 383.6 384 49.5
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.8e-104 383.6 391 49.1
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.8e-104 383.6 383 49.3
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 2.3e-104 383.3 383 49.9
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 3.0e-104 382.9 394 49.0
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 3.9e-104 382.5 384 49.0
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 5.1e-104 382.1 383 49.1
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 8.7e-104 381.3 381 49.6
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.1e-103 380.9 385 49.4
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 1.5e-103 380.6 386 49.2
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.5e-103 380.6 389 49.4
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 1.5e-103 380.6 380 50.0
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.9e-103 380.2 385 50.4
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 2.5e-103 379.8 391 48.1
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 4.3e-103 379.0 385 49.1
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 5.7e-103 378.6 383 48.6
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 9.7e-103 377.9 392 48.5
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 2.8e-102 376.3 391 48.1
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 2.8e-102 376.3 391 47.8
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.7e-102 375.9 390 50.5
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 3.7e-102 375.9 385 49.4
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.7e-102 375.9 381 48.6
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 3.7e-102 375.9 384 50.3
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 6.3e-102 375.2 387 52.7
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.1e-101 374.4 381 50.9
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.1e-101 374.4 385 49.6
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.8e-101 373.6 374 50.3
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 2.4e-101 373.2 394 50.8
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 2.4e-101 373.2 386 49.0
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 2.4e-101 373.2 385 48.1
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 4.1e-101 372.5 397 49.1
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 9.1e-101 371.3 386 50.0
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 1.2e-100 370.9 384 47.9
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.2e-100 370.9 385 48.8
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 2.0e-100 370.2 384 47.7
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 2.6e-100 369.8 379 49.3
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 4.5e-100 369.0 391 46.8
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 5.9e-100 368.6 389 47.6
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 1.0e-99 367.9 385 48.3
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 1.3e-99 367.5 388 46.9
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 2.2e-99 366.7 402 47.0
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 3.8e-99 365.9 384 46.9
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 5.0e-99 365.5 384 47.1
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 5.0e-99 365.5 384 47.7
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 5.0e-99 365.5 391 46.5
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 6.5e-99 365.2 387 47.5
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 6.5e-99 365.2 389 46.8
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 6.5e-99 365.2 389 46.8
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 8.5e-99 364.8 381 48.0
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 1.1e-98 364.4 384 48.2
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.9e-98 363.6 423 43.7
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 2.5e-98 363.2 383 47.5
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 3.2e-98 362.8 387 50.4
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 4.2e-98 362.5 385 49.1
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 5.5e-98 362.1 384 46.6
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 5.5e-98 362.1 385 49.1
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 1.2e-97 360.9 387 47.8
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 3.6e-97 359.4 384 46.6
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 4.6e-97 359.0 390 46.7
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 4.6e-97 359.0 386 47.7
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 7.9e-97 358.2 387 49.1
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.4e-96 357.5 389 48.1
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 1.1e-95 354.4 352 49.1
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.5e-95 354.0 403 45.4
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 3.3e-95 352.8 391 47.1
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 1.7e-94 350.5 391 46.8
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 2.2e-94 350.1 385 46.8
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 3.7e-94 349.4 384 46.9
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 8.2e-94 348.2 464 41.4
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 3.1e-93 346.3 434 44.7
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 7.7e-92 341.7 511 40.1
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 2.9e-91 339.7 411 45.5
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 2.9e-91 339.7 379 47.5
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 8.5e-91 338.2 381 46.2
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 1.1e-90 337.8 435 42.1
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 7.9e-89 331.6 354 50.0
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 2.6e-87 326.6 267 56.6
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 1.7e-86 323.9 397 44.3
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 2.4e-85 320.1 266 56.0
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 7.7e-84 315.1 268 53.4
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 6.5e-83 312.0 384 43.5
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 3.6e-81 306.2 381 44.4
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 5.2e-80 302.4 381 44.6
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 2.0e-79 300.4 382 43.2
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 1.7e-78 297.4 354 45.5
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 1.2e-76 291.2 316 48.7
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.3e-75 287.7 326 47.5
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.1e-74 284.6 210 63.8
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 1.2e-73 281.2 307 46.6
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 1.8e-72 277.3 397 39.0
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 5.2e-72 275.8 389 41.6
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 4.4e-71 272.7 220 57.3
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 7.7e-68 261.9 153 73.9
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 6.6e-59 232.3 126 77.8
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 2.8e-57 226.9 132 75.8
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 2.1e-49 200.7 288 41.3
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.1e-49 200.7 288 41.3
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 3.2e-45 186.8 394 31.2
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 2.6e-39 167.2 280 35.0
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 9.9e-39 165.2 256 35.9
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 2.1e-33 147.5 83 78.3
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 6.9e-24 115.9 75 68.0
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 8.4e-22 109.0 237 29.5
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 8.4e-22 109.0 236 33.9
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 9.3e-21 105.5 234 31.2
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 9.3e-21 105.5 234 31.2
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 3.9e-19 100.1 104 49.0
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 4.3e-18 96.7 181 33.7
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 7.1e-13 79.3 65 50.8
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.5e-10 71.6 113 38.9


User provided reference genes

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