Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24341 Sequoiadendron giganteum HOM05D002575 ORTHO05D010935 0.0e+00 1603.6 773 100.0
SEGI_27020 Sequoiadendron giganteum HOM05D011138 ORTHO05D010935 0.0e+00 1343.6 685 93.1
SEGI_35027 Sequoiadendron giganteum HOM05D011138 ORTHO05D010935 0.0e+00 1218.4 753 80.2
SEGI_10774 Sequoiadendron giganteum HOM05D000188 ORTHO05D010935 1.1e-161 574.7 710 48.5
SMO240G0022 Selaginella moellendorffii HOM05D000188 ORTHO05D010935 2.3e-100 370.9 686 36.6
SMO340G0315 Selaginella moellendorffii HOM05D011138 ORTHO05D010935 1.3e-71 275.4 686 29.3
AagrBONN_evm.TU.Sc2ySwM_117.575 Anthoceros agrestis HOM05D000188 ORTHO05D010935 1.2e-64 252.3 600 31.2
Mapoly0032s0139 Marchantia polymorpha HOM05D000188 ORTHO05D010935 1.2e-56 225.7 221 46.2
Mapoly0032s0134 Marchantia polymorpha HOM05D000188 ORTHO05D010935 1.6e-56 225.3 271 41.3
SMO361G0816 Selaginella moellendorffii HOM05D011138 ORTHO05D010935 1.5e-54 218.8 685 26.7
SMO240G0055 Selaginella moellendorffii HOM05D011138 ORTHO05D010935 4.9e-42 177.2 186 46.8
CBR_g21905 Chara braunii HOM05D000188 ORTHO05D010935 2.5e-30 138.3 372 30.9
AagrBONN_evm.TU.Sc2ySwM_344.724 Anthoceros agrestis HOM05D011138 ORTHO05D010935 7.4e-30 136.7 150 45.3
CBR_g54014 Chara braunii HOM05D000188 ORTHO05D010935 3.1e-28 131.3 688 24.4
AagrBONN_evm.TU.Sc2ySwM_344.744 Anthoceros agrestis HOM05D011138 ORTHO05D010935 9.0e-28 129.8 177 40.7
SMO340G0096 Selaginella moellendorffii HOM05D003261 ORTHO05D010935 2.2e-21 108.6 141 43.3
AagrBONN_evm.TU.Sc2ySwM_344.726 Anthoceros agrestis HOM05D011138 ORTHO05D010935 2.8e-21 108.2 118 44.1
CsaV3_1G007320 Cucumis sativus L. HOM05D002575 ORTHO05D005851 2.8e-21 108.2 461 27.3
MELO3C002148.2 Cucumis melo HOM05D002575 ORTHO05D005851 3.7e-21 107.8 488 26.4
TPR.G22312 Trifolium pratense HOM05D002575 ORTHO05D005851 1.4e-20 105.9 531 27.1
RcHm_v2.0_Chr1g0370241 Rosa chinensis HOM05D002575 ORTHO05D009115 1.8e-20 105.5 400 25.8
unitig_62.g23809 Utricularia gibba HOM05D002575 ORTHO05D005851 1.8e-20 105.5 468 29.5
ClCG04G010460 Citrullus lanatus HOM05D002575 ORTHO05D005851 6.9e-20 103.6 452 26.1
Medtr6g071140 Medicago truncatula HOM05D002575 ORTHO05D005851 1.2e-19 102.8 524 25.2
Migut.D01221 Erythranthe guttata HOM05D002575 ORTHO05D005851 2.0e-19 102.1 468 29.1
Rhsim05G0011000 Rhododendron simsii HOM05D002575 ORTHO05D005851 2.0e-19 102.1 504 28.4
VMungo0251G0922 Vigna mungo HOM05D002575 ORTHO05D005851 3.4e-19 101.3 522 25.1
Ciclev10018607m.g Citrus clementina HOM05D002575 ORTHO05D005851 7.7e-19 100.1 460 28.9
Phvul.002G331600 Phaseolus vulgaris HOM05D002575 ORTHO05D005851 1.0e-18 99.8 549 25.5
Eucgr.K02284 Eucalyptus grandis HOM05D002575 ORTHO05D005851 2.2e-18 98.6 456 28.3
Ca_25356_v3 Cicer arietinum L. HOM05D002575 ORTHO05D005851 6.5e-18 97.1 523 24.1
Psat1g030040 Pisum sativum HOM05D002575 ORTHO05D005851 6.5e-18 97.1 537 26.8
SGA_v2.0_scaffold40G15642 Striga asiatica HOM05D002575 ORTHO05D005851 6.5e-18 97.1 462 27.7
BcaC05g24802 Brassica carinata HOM05D002575 ORTHO05D005851 8.5e-18 96.7 447 30.0
MD14G1238900 Malus domestica HOM05D002575 ORTHO05D005851 8.5e-18 96.7 482 24.5
Psat7g000840 Pisum sativum HOM05D002575 ORTHO05D005851 1.1e-17 96.3 449 28.3
THA.LOC104798618 Tarenaya hassleriana HOM05D002575 ORTHO05D005851 1.1e-17 96.3 472 25.4
MD06G1232100 Malus domestica HOM05D002575 ORTHO05D005851 1.4e-17 95.9 526 30.4
Actinidia18726 Actinidia chinensis HOM05D002575 ORTHO05D005851 2.5e-17 95.1 468 29.3
C05p08310 Brassica napus HOM05D002575 ORTHO05D005851 3.2e-17 94.7 418 30.1
BolC5t29581H Brassica oleracea HOM05D002575 ORTHO05D005851 3.2e-17 94.7 418 29.9
CiPaw.15G146400 Carya illinoinensis HOM05D002575 ORTHO05D005851 3.2e-17 94.7 552 23.9
TWI15G0942 Tripterygium wilfordii HOM05D000154 ORTHO05D005851 3.2e-17 94.7 486 24.9
Aa31LG9G16040 Aethionema arabicum HOM05D002575 ORTHO05D005851 5.5e-17 94.0 443 29.1
FAN08G0580 Fragaria x ananassa HOM05D002575 ORTHO05D005851 5.5e-17 94.0 466 28.3
Ciclev10030684m.g Citrus clementina HOM05D002575 ORTHO05D009115 7.2e-17 93.6 415 24.6
FAN13G2332 Fragaria x ananassa HOM05D002575 ORTHO05D005851 7.2e-17 93.6 466 28.1
Potri.012G043700 Populus trichocarpa HOM05D002575 ORTHO05D005851 7.2e-17 93.6 560 25.0
Potri.015G034500 Populus trichocarpa HOM05D002575 ORTHO05D005851 7.2e-17 93.6 454 29.1
SHI07444 Sapria himalayana HOM05D002575 ORTHO05D005851 7.2e-17 93.6 461 29.1
FAN04G2427 Fragaria x ananassa HOM05D002575 ORTHO05D005851 9.4e-17 93.2 466 28.3
Thecc.03G042800 Theobroma cacao HOM05D002575 ORTHO05D005851 9.4e-17 93.2 468 27.6
A06p06820 Brassica napus HOM05D002575 ORTHO05D005851 1.2e-16 92.8 418 29.7
BraA06t23896Z Brassica rapa HOM05D002575 ORTHO05D005851 1.2e-16 92.8 418 29.7
Cfa020632 Carpinus fangiana HOM05D002575 ORTHO05D005851 1.2e-16 92.8 467 25.1
Sed0021537 Sechium edule HOM05D002575 ORTHO05D005851 1.2e-16 92.8 472 24.2
Haze_18906 Corylus avellana HOM05D002575 ORTHO05D005851 1.6e-16 92.4 474 25.5
Lalb_Chr09g0330291 Lupinus albus HOM05D002575 ORTHO05D005851 1.6e-16 92.4 490 25.5
QL10p031431 Quercus lobata HOM05D002575 ORTHO05D005851 1.6e-16 92.4 518 23.9
Aqoxy3G02495 Aquilegia oxysepala HOM05D002575 ORTHO05D005851 2.1e-16 92.0 454 29.1
Dinv17995 Davidia involucrata HOM05D002575 ORTHO05D009115 2.1e-16 92.0 509 24.4
FvH4_5g17660 Fragaria vesca HOM05D002575 ORTHO05D005851 2.1e-16 92.0 466 28.3
Glyma.08G055900 Glycine max HOM05D002575 ORTHO05D005851 2.1e-16 92.0 583 24.2
PSO017G5700 Papaver somniferum HOM05D002575 ORTHO05D005851 2.1e-16 92.0 454 29.3
Atru.chr9.1637 Acer truncatum HOM05D002575 ORTHO05D005851 2.7e-16 91.7 481 24.1
Thecc.04G023100 Theobroma cacao HOM05D002575 ORTHO05D005851 2.7e-16 91.7 456 27.4
CAN.G843.28 Capsicum annuum HOM05D002575 ORTHO05D005851 4.7e-16 90.9 489 28.2
Gohir.A09G049800 Gossypium hirsutum HOM05D002575 ORTHO05D005851 4.7e-16 90.9 464 27.8
ATR0753G085 Amborella trichopoda HOM05D002575 ORTHO05D005851 6.1e-16 90.5 480 28.5
Lj2g0016045 Lotus japonicus HOM05D002575 ORTHO05D005851 6.1e-16 90.5 539 24.7
PSO478G3706 Papaver somniferum HOM05D002575 ORTHO05D005851 6.1e-16 90.5 453 29.1
Ca_17175_v3 Cicer arietinum L. HOM05D002575 ORTHO05D005851 7.9e-16 90.1 505 24.6
Prupe.5G236400 Prunus persica HOM05D002575 ORTHO05D005851 7.9e-16 90.1 515 30.7
Aqoxy1G02870 Aquilegia oxysepala HOM05D002575 ORTHO05D005851 1.0e-15 89.7 449 29.4
AL1G20860 Arabidopsis lyrata HOM05D002575 ORTHO05D005851 1.0e-15 89.7 418 29.2
Gohir.D09G051100 Gossypium hirsutum HOM05D002575 ORTHO05D005851 1.0e-15 89.7 464 27.8
Eucgr.H00552 Eucalyptus grandis HOM05D002575 ORTHO05D005851 1.4e-15 89.4 461 28.0
Sabra15G0028500 Salix brachista HOM05D000154 ORTHO05D005851 1.4e-15 89.4 511 24.9
Gorai.006G058600 Gossypium raimondii HOM05D002575 ORTHO05D005851 1.8e-15 89.0 464 27.8
Oeu035881.1 Olea europaea HOM05D002575 ORTHO05D005851 3.0e-15 88.2 459 28.5
CSS0037879 Camellia sinensis var. sinensis HOM05D002575 ORTHO05D009115 5.1e-15 87.4 400 30.0
Hund11722 Selenicereus undatus HOM05D002575 ORTHO05D005851 5.1e-15 87.4 471 26.3
MSTRG.27331 Avicennia marina HOM05D002575 ORTHO05D009115 6.7e-15 87.0 396 25.0
Sc09g0000650 Simmondsia chinensis HOM05D002575 ORTHO05D005851 8.8e-15 86.7 504 24.0
RcHm_v2.0_Chr7g0178011 Rosa chinensis HOM05D002575 ORTHO05D005851 1.1e-14 86.3 490 23.9
ECA233G4261 Erigeron canadensis HOM05D002575 ORTHO05D005851 1.5e-14 85.9 455 28.8
Os06g0252300 Oryza sativa ssp. japonica HOM05D002575 ORTHO05D005851 1.5e-14 85.9 415 29.9
PGSC0003DMG400014182 Solanum tuberosum HOM05D002575 ORTHO05D005851 1.5e-14 85.9 490 24.9
Carub.0001s0958 Capsella rubella HOM05D002575 ORTHO05D005851 2.0e-14 85.5 418 28.7
Hma1.2p1_0471F.1_g159480 Hydrangea macrophylla HOM05D002575 ORTHO05D005851 2.0e-14 85.5 448 28.8
EL10Ac3g05872 Beta vulgaris HOM05D002575 ORTHO05D005851 2.6e-14 85.1 502 23.9
Cre03.g166850 Chlamydomonas reinhardtii HOM05D003704 ORTHO05D010935 2.6e-14 85.1 519 22.5
Duzib205G1961 Durio zibethinus HOM05D002575 ORTHO05D005851 2.6e-14 85.1 465 27.5
GSVIVG01032817001 Vitis vinifera HOM05D002575 ORTHO05D009115 2.6e-14 85.1 436 25.2
AagrBONN_evm.TU.Sc2ySwM_368.338 Anthoceros agrestis HOM05D011138 ORTHO05D010935 4.4e-14 84.3 78 51.3
Lj4g0001149 Lotus japonicus HOM05D002575 ORTHO05D005851 4.4e-14 84.3 479 24.8
Prupe.2G250200 Prunus persica HOM05D002575 ORTHO05D009115 4.4e-14 84.3 439 24.4
Cc00_g07980 Coffea canephora HOM05D002575 ORTHO05D005851 5.7e-14 84.0 492 24.6
Solyc03g118420.4 Solanum lycopersicum HOM05D002575 ORTHO05D005851 5.7e-14 84.0 490 24.7
Zm00001eb280780 Zea mays HOM05D002575 ORTHO05D005851 5.7e-14 84.0 509 23.4
EL10Ac2g04832 Beta vulgaris HOM05D002575 ORTHO05D009115 7.4e-14 83.6 441 25.9
Nn3g16592 Nelumbo nucifera HOM05D002575 ORTHO05D005851 7.4e-14 83.6 476 25.2
AT1G10170 Arabidopsis thaliana HOM05D002575 ORTHO05D005851 1.3e-13 82.8 453 24.3
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.3e-13 82.8 76 56.6
arahy.Tifrunner.gnm1.ann1.TQ1MU5 Arachis hypogaea HOM05D002575 ORTHO05D005851 1.7e-13 82.4 496 24.4
AUR62021131 Chenopodium quinoa HOM05D002575 ORTHO05D005851 2.2e-13 82.0 487 22.6
Lj1A955G80 Lonicera japonica HOM05D002575 ORTHO05D009115 2.2e-13 82.0 434 24.0
Sopen03g037310 Solanum pennellii HOM05D002575 ORTHO05D005851 2.2e-13 82.0 490 24.7
COL.COLO4_38532 Corchorus olitorius HOM05D002575 ORTHO05D005851 2.8e-13 81.6 269 28.3
AUR62031415 Chenopodium quinoa HOM05D002575 ORTHO05D005851 4.8e-13 80.9 506 24.1
Duzib128G0837 Durio zibethinus HOM05D002575 ORTHO05D009115 4.8e-13 80.9 449 24.9
PSO339G0934 Papaver somniferum HOM05D002575 ORTHO05D009115 4.8e-13 80.9 328 26.2
Ah.16g103570 Amaranthus hybridus HOM05D002575 ORTHO05D009115 6.3e-13 80.5 323 26.6
FAN03G0699 Fragaria x ananassa HOM05D000781 ORTHO05D009115 6.3e-13 80.5 385 25.2
PSO384G3900 Papaver somniferum HOM05D002575 ORTHO05D009115 6.3e-13 80.5 472 23.7
Glyma.09G173000 Glycine max HOM05D002575 ORTHO05D005851 8.2e-13 80.1 494 25.1
Medtr4g027040 Medicago truncatula HOM05D002575 ORTHO05D005851 8.2e-13 80.1 513 22.8
Cfa001317 Carpinus fangiana HOM05D002575 ORTHO05D009115 1.1e-12 79.7 231 32.0
SEGI_19242 Sequoiadendron giganteum HOM05D013172 ORTHO05D010935 1.4e-12 79.3 184 26.6
DCAR_003534 Daucus carota HOM05D002575 ORTHO05D005851 1.8e-12 79.0 482 24.1
DCAR_024827 Daucus carota HOM05D002575 ORTHO05D009115 1.8e-12 79.0 441 24.9
Nn3g16590 Nelumbo nucifera HOM05D002575 ORTHO05D005851 1.8e-12 79.0 476 25.2
SalBow3G3712 Salvia bowleyana HOM05D002575 ORTHO05D005851 1.8e-12 79.0 481 23.9
SEGI_15761 Sequoiadendron giganteum HOM05D002607 ORTHO05D006782 1.8e-12 79.0 35 100.0
Manes.06G003200 Manihot esculenta HOM05D002575 ORTHO05D005851 2.4e-12 78.6 472 23.5
Nn2g10843 Nelumbo nucifera HOM05D002575 ORTHO05D009115 2.4e-12 78.6 184 34.8
Peaxi162Scf00825g00235 Petunia axillaris HOM05D002575 ORTHO05D009115 5.3e-12 77.4 293 28.3
THA.LOC104816547 Tarenaya hassleriana HOM05D002575 ORTHO05D009115 5.3e-12 77.4 422 26.5
Thhalv10006632m.g Eutrema salsugineum HOM05D002575 ORTHO05D005851 7.0e-12 77.0 490 24.9
Sopen06g017550 Solanum pennellii HOM05D002575 ORTHO05D009115 7.0e-12 77.0 317 26.2
Cc02_g06500 Coffea canephora HOM05D002575 ORTHO05D009115 9.1e-12 76.6 315 27.9
Solyc06g051570.4 Solanum lycopersicum HOM05D002575 ORTHO05D009115 9.1e-12 76.6 418 24.2
Dinv02695 Davidia involucrata HOM05D002575 ORTHO05D005851 1.2e-11 76.3 500 24.2
vmacro06970 Vaccinium macrocarpon HOM05D002575 ORTHO05D009115 1.2e-11 76.3 354 26.6
ECA238G2639 Erigeron canadensis HOM05D002575 ORTHO05D009115 2.0e-11 75.5 399 23.3
HanXRQChr07g0202861 Helianthus annuus HOM05D002575 ORTHO05D009115 2.0e-11 75.5 473 23.3
Migut.F00683 Erythranthe guttata HOM05D002575 ORTHO05D009115 2.6e-11 75.1 425 27.5
Haze_17227 Corylus avellana HOM05D002575 ORTHO05D009115 4.5e-11 74.3 157 36.9
Lsat_1_v5_gn_2_123440 Lactuca sativa HOM05D002575 ORTHO05D009115 4.5e-11 74.3 467 24.8
CAN.G19.8 Capsicum annuum HOM05D002575 ORTHO05D009115 7.7e-11 73.6 318 25.2
AUR62012252 Chenopodium quinoa HOM05D002575 ORTHO05D009115 7.7e-11 73.6 439 25.5
Rhsim03G0143800 Rhododendron simsii HOM05D002575 ORTHO05D009115 1.0e-10 73.2 468 24.4
Lj6g0019077 Lotus japonicus HOM05D002575 ORTHO05D009115 1.7e-10 72.4 259 29.7
Aqoxy4G02552 Aquilegia oxysepala HOM05D002575 ORTHO05D009115 2.2e-10 72.0 303 27.7
Gohir.A06G163400 Gossypium hirsutum HOM05D002575 ORTHO05D009115 2.2e-10 72.0 431 23.2
Oeu028342.1 Olea europaea HOM05D002575 ORTHO05D009115 2.9e-10 71.6 170 34.1
SGA_v2.0_scaffold60G20999 Striga asiatica HOM05D002575 ORTHO05D009115 2.9e-10 71.6 234 28.6
CSS0040654 Camellia sinensis var. sinensis HOM05D002575 ORTHO05D005851 3.8e-10 71.2 445 26.7
SEGI_08709 Sequoiadendron giganteum HOM05D000529 ORTHO05D000472 5.0e-10 70.9 67 55.2
SMO230G0013 Selaginella moellendorffii HOM05D002575 ORTHO05D009115 6.5e-10 70.5 408 23.8
Mapoly0036s0109 Marchantia polymorpha HOM05D002575 ORTHO05D005851 1.1e-09 69.7 407 25.1
CSS0046441 Camellia sinensis var. sinensis HOM05D002575 ORTHO05D005851 1.5e-09 69.3 438 26.5
QL08p063209 Quercus lobata HOM05D002575 ORTHO05D009115 1.5e-09 69.3 360 26.4
Cpa.g.sc19.173 Carica papaya HOM05D002575 ORTHO05D009115 2.5e-09 68.6 316 25.6
Zm00001eb336160 Zea mays HOM05D002575 ORTHO05D009115 2.5e-09 68.6 224 28.1
TAR636G1371 Trochodendron aralioides HOM05D000781 ORTHO05D000643 3.2e-09 68.2 480 22.9
Cpa.g.sc3.363 Carica papaya HOM05D002575 ORTHO05D005851 4.2e-09 67.8 261 25.7
Cre04.g218900 Chlamydomonas reinhardtii HOM05D003621 ORTHO05D010935 4.2e-09 67.8 126 33.3
Gohir.D06G169000 Gossypium hirsutum HOM05D002575 ORTHO05D009115 4.2e-09 67.8 429 22.6
HPP92_013887 Vanilla planifolia HOM05D002575 ORTHO05D009115 7.2e-09 67.0 456 23.0
Medtr3g070780 Medicago truncatula HOM05D002575 ORTHO05D009115 9.4e-09 66.6 247 26.7
CiPaw.01G298700 Carya illinoinensis HOM05D002575 ORTHO05D009115 1.2e-08 66.2 177 34.5
Os01g0158900 Oryza sativa ssp. japonica HOM05D002575 ORTHO05D009115 2.7e-08 65.1 191 29.8
Cfa026744 Carpinus fangiana HOM05D002575 ORTHO05D005851 3.6e-08 64.7 447 21.7
Glyma.07G104700 Glycine max HOM05D002575 ORTHO05D005851 3.6e-08 64.7 443 24.2
Gorai.010G197800 Gossypium raimondii HOM05D002575 ORTHO05D009115 3.6e-08 64.7 429 22.4
Sp6g37233 Schrenkiella parvula HOM05D002575 ORTHO05D009115 4.7e-08 64.3 198 31.8
Mapoly0154s0047 Marchantia polymorpha HOM05D002575 ORTHO05D009115 6.1e-08 63.9 224 28.1
HPP92_013879 Vanilla planifolia HOM05D002575 ORTHO05D009115 8.0e-08 63.5 443 23.0
Carub.0006s0455 Capsella rubella HOM05D002575 ORTHO05D009115 1.0e-07 63.2 320 25.0
Cre04.g219000 Chlamydomonas reinhardtii HOM05D003621 ORTHO05D010935 1.0e-07 63.2 98 35.7
AL6G15550 Arabidopsis lyrata HOM05D002575 ORTHO05D009115 1.4e-07 62.8 320 25.3
Ca_15127_v3 Cicer arietinum L. HOM05D002575 ORTHO05D009115 1.4e-07 62.8 199 29.6
arahy.Tifrunner.gnm1.ann1.DA4QY1 Arachis hypogaea HOM05D002575 ORTHO05D009115 1.8e-07 62.4 158 29.7
TPR.G11205 Trifolium pratense HOM05D002575 ORTHO05D009115 1.8e-07 62.4 207 30.0
Thhalv10012642m.g Eutrema salsugineum HOM05D002575 ORTHO05D009115 2.3e-07 62.0 320 24.7
SEGI_20237 Sequoiadendron giganteum HOM05D013172 ORTHO05D010935 2.3e-07 62.0 185 25.4
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 2.3e-07 62.0 37 78.4
Psat5g128320 Pisum sativum HOM05D002575 ORTHO05D009115 4.0e-07 61.2 208 29.3
AT5G05660 Arabidopsis thaliana HOM05D002575 ORTHO05D009115 5.2e-07 60.8 320 24.7
CBR_g3071 Chara braunii HOM05D002575 ORTHO05D009115 6.7e-07 60.5 329 24.9
CsaV3_6G001850 Cucumis sativus L. HOM05D002575 ORTHO05D009115 1.1e-06 59.7 169 32.0
VMungo1383G0855 Vigna mungo HOM05D002575 ORTHO05D009115 2.0e-06 58.9 121 32.2
Glyma.11G230200 Glycine max HOM05D002575 ORTHO05D009115 7.5e-06 57.0 147 29.3
Manes.10G012200 Manihot esculenta HOM05D002575 ORTHO05D009115 7.5e-06 57.0 152 30.3


User provided reference genes

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