Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.4e-215 752.7 368 100.0
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 1.1e-140 503.8 323 70.9
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.4e-140 503.4 315 73.3
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.4e-140 502.7 315 74.6
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 3.5e-139 498.8 323 73.1
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.6e-139 498.4 326 72.1
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 4.6e-139 498.4 307 73.9
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 4.6e-139 498.4 315 72.1
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 6.0e-139 498.0 315 73.7
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 3.0e-138 495.7 315 73.7
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 3.9e-138 495.4 324 70.4
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 5.1e-138 495.0 318 72.0
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 6.7e-138 494.6 318 71.7
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 6.7e-138 494.6 318 71.7
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 1.9e-137 493.0 324 71.9
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.5e-137 492.7 315 73.0
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.5e-137 492.7 325 70.2
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 4.3e-137 491.9 318 70.4
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 4.3e-137 491.9 315 72.1
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 5.6e-137 491.5 315 72.4
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 5.6e-137 491.5 322 72.4
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 7.4e-137 491.1 307 74.9
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 7.4e-137 491.1 324 70.1
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 9.6e-137 490.7 325 71.7
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 9.6e-137 490.7 324 70.1
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 1.3e-136 490.3 315 72.4
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.3e-136 490.3 320 72.5
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.3e-136 490.3 325 71.7
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 1.6e-136 490.0 313 73.5
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 1.6e-136 490.0 307 75.6
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 2.1e-136 489.6 325 71.1
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 2.1e-136 489.6 318 70.1
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 2.8e-136 489.2 322 72.4
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 6.2e-136 488.0 327 71.6
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.4e-135 486.9 307 73.6
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 1.4e-135 486.9 322 71.1
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.4e-135 486.9 307 73.3
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 1.8e-135 486.5 331 68.9
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 2.4e-135 486.1 315 71.4
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 2.4e-135 486.1 307 74.3
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 3.1e-135 485.7 325 70.5
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 3.1e-135 485.7 325 70.5
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 4.0e-135 485.3 328 70.1
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 4.0e-135 485.3 325 70.5
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 4.0e-135 485.3 325 70.5
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 4.0e-135 485.3 325 70.5
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 4.0e-135 485.3 315 72.4
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 5.3e-135 485.0 321 69.5
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 5.3e-135 485.0 325 70.5
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 6.9e-135 484.6 323 71.8
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.9e-135 484.6 323 71.5
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 9.0e-135 484.2 309 70.9
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 2.6e-134 482.6 326 70.9
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.6e-134 482.6 323 71.2
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 2.6e-134 482.6 322 70.8
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.6e-134 482.6 308 70.8
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 3.4e-134 482.3 325 70.5
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 3.4e-134 482.3 324 68.8
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 5.8e-134 481.5 322 70.2
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 7.6e-134 481.1 307 72.6
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 7.6e-134 481.1 307 73.0
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.3e-133 480.3 314 72.9
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.3e-133 480.3 323 70.6
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 2.9e-133 479.2 325 69.5
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 2.9e-133 479.2 323 69.0
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 2.9e-133 479.2 336 68.5
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.8e-133 478.8 323 71.5
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 4.9e-133 478.4 317 71.9
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 4.9e-133 478.4 324 70.7
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.9e-133 478.4 323 70.9
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 1.1e-132 477.2 313 70.9
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 1.1e-132 477.2 324 68.5
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 1.4e-132 476.9 320 71.9
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 1.9e-132 476.5 308 72.4
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 2.4e-132 476.1 307 71.3
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 2.4e-132 476.1 322 69.6
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 5.5e-132 474.9 315 70.5
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 9.3e-132 474.2 307 71.3
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 9.3e-132 474.2 307 71.3
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 2.1e-131 473.0 314 70.7
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.7e-131 472.6 307 71.3
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 3.5e-131 472.2 327 67.6
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.6e-131 471.9 326 69.3
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 3.0e-130 469.2 307 70.7
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.9e-129 466.5 327 67.6
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 9.6e-129 464.2 327 65.4
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.6e-128 463.4 316 67.4
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.6e-128 463.4 319 68.3
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 2.1e-128 463.0 307 69.4
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.1e-127 460.7 327 66.7
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.4e-127 459.5 320 66.9
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 5.3e-127 458.4 304 69.1
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.9e-127 458.0 320 66.6
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 9.0e-127 457.6 315 69.8
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 4.5e-126 455.3 360 61.7
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 1.0e-125 454.1 292 70.9
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.7e-125 453.4 329 64.7
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 1.7e-125 453.4 313 69.6
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.9e-124 449.9 329 64.4
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 7.1e-124 448.0 307 68.4
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 7.1e-124 448.0 310 68.4
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 7.9e-123 444.5 315 67.3
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.0e-122 444.1 313 68.4
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 1.8e-122 443.4 315 67.0
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.8e-122 443.4 316 64.6
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.8e-122 443.4 308 68.5
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.0e-122 442.6 305 68.2
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.9e-122 442.2 306 65.7
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 6.3e-120 434.9 272 72.4
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 4.1e-119 432.2 345 63.5
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 9.0e-119 431.0 326 64.7
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.6e-118 429.5 318 66.4
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 6.5e-117 424.9 343 60.6
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 6.5e-117 424.9 307 67.8
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 7.9e-115 417.9 284 66.5
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 5.1e-114 415.2 307 63.8
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 8.8e-114 414.5 304 61.8
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 3.3e-113 412.5 263 72.2
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 3.7e-112 409.1 264 73.1
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 6.9e-111 404.8 285 65.6
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 4.7e-107 392.1 304 60.9
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 1.8e-106 390.2 323 60.4
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 5.7e-105 385.2 289 61.9
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 1.7e-104 383.6 243 74.1
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.3e-96 357.5 387 49.1
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 9.1e-95 351.3 305 60.3
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 7.7e-94 348.2 289 60.2
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 5.5e-92 342.0 237 66.2
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.2e-91 340.9 221 71.9
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 7.0e-87 325.1 245 62.9
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.8e-85 319.3 227 63.4
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 5.4e-79 298.9 301 50.2
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 3.6e-75 286.2 268 54.1
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.2e-70 271.2 293 47.8
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.3e-66 256.9 167 69.5
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 2.5e-60 236.9 150 72.0
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 1.7e-53 214.2 195 55.9
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.2e-51 208.0 163 62.6
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 3.1e-50 203.4 139 66.9
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.1e-43 180.6 113 73.5
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 4.9e-32 142.9 104 67.3
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 2.4e-31 140.6 171 48.0
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 1.1e-23 115.2 75 64.0
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 3.9e-21 106.7 64 75.0
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.1e-19 100.9 66 66.7
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 4.8e-19 99.8 74 64.9
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.0e-13 82.0 55 69.1
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 2.3e-13 80.9 63 58.7
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 8.7e-13 79.0 208 29.3
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 2.5e-12 77.4 90 46.7
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 2.5e-12 77.4 215 27.0
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 9.6e-12 75.5 193 27.5
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 8.2e-11 72.4 52 67.3
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 9.0e-10 68.9 235 27.2
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 7.6e-09 65.9 184 31.5
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 1.7e-08 64.7 172 27.9
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.2e-08 64.3 41 61.0
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 2.5e-07 60.8 78 46.2
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 4.6e-06 56.6 152 29.6


User provided reference genes

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