Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21756 Sequoiadendron giganteum HOM05D000104 ORTHO05D006311 5.1e-110 401.0 189 100.0
CiPaw.05G006100 Carya illinoinensis HOM05D000104 ORTHO05D006311 6.2e-31 138.3 142 52.8
Psat4g228280 Pisum sativum HOM05D000104 ORTHO05D006311 6.9e-30 134.8 117 58.1
TPR.G21597 Trifolium pratense HOM05D000104 ORTHO05D006311 6.9e-30 134.8 117 59.0
CDE08G1277 Ceratophyllum demersum HOM05D000104 ORTHO05D006311 9.0e-30 134.4 116 59.5
MBI06_g36644_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D006311 9.0e-30 134.4 121 58.7
ATR0100G059 Amborella trichopoda HOM05D000104 ORTHO05D006311 2.0e-29 133.3 124 56.5
PSO170G2386 Papaver somniferum HOM05D000104 ORTHO05D006311 2.6e-29 132.9 127 54.3
PSO210G6827 Papaver somniferum HOM05D000104 ORTHO05D006311 2.6e-29 132.9 127 54.3
HPP92_016725 Vanilla planifolia HOM05D000104 ORTHO05D006311 2.6e-29 132.9 118 57.6
Gohir.D13G038400 Gossypium hirsutum HOM05D000104 ORTHO05D006311 3.4e-29 132.5 114 58.8
Gorai.013G043100 Gossypium raimondii HOM05D000104 ORTHO05D006311 3.4e-29 132.5 114 58.8
Glyma.01G244700 Glycine max HOM05D000104 ORTHO05D006311 4.5e-29 132.1 117 56.4
Medtr5g004720 Medicago truncatula HOM05D000104 ORTHO05D006311 7.6e-29 131.3 117 54.7
Prupe.8G123600 Prunus persica HOM05D000104 ORTHO05D006311 7.6e-29 131.3 114 54.4
Nn5g30246 Nelumbo nucifera HOM05D000104 ORTHO05D006311 9.9e-29 131.0 124 54.0
unitig_0.g82 Utricularia gibba HOM05D004246 ORTHO05D006311 1.3e-28 130.6 121 52.9
Cfa004510 Carpinus fangiana HOM05D000104 ORTHO05D006311 4.9e-28 128.6 140 47.9
Oeu013703.1 Olea europaea HOM05D000104 ORTHO05D006311 4.9e-28 128.6 118 55.1
Haze_10067 Corylus avellana HOM05D000104 ORTHO05D006311 6.4e-28 128.3 142 47.9
Gohir.A13G039700 Gossypium hirsutum HOM05D000104 ORTHO05D006311 8.4e-28 127.9 114 57.0
Ca_24337_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006311 1.1e-27 127.5 117 53.8
Lalb_Chr05g0210731 Lupinus albus HOM05D000104 ORTHO05D006311 1.1e-27 127.5 115 55.7
Potri.004G141500 Populus trichocarpa HOM05D000104 ORTHO05D006311 1.1e-27 127.5 114 56.1
FvH4_2g06200 Fragaria vesca HOM05D000104 ORTHO05D006311 1.4e-27 127.1 114 54.4
FAN24G2290 Fragaria x ananassa HOM05D000104 ORTHO05D006311 1.4e-27 127.1 114 54.4
Duzib052G0677 Durio zibethinus HOM05D000104 ORTHO05D006311 2.4e-27 126.3 122 57.4
Os02g0762800 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006311 2.4e-27 126.3 119 51.3
Rhsim05G0083600 Rhododendron simsii HOM05D000104 ORTHO05D006311 2.4e-27 126.3 117 53.8
Phvul.002G054300 Phaseolus vulgaris HOM05D000104 ORTHO05D006311 3.2e-27 125.9 115 55.7
GSVIVG01031756001 Vitis vinifera HOM05D000104 ORTHO05D006311 3.2e-27 125.9 135 50.4
Sed0008150 Sechium edule HOM05D000104 ORTHO05D006311 4.2e-27 125.6 114 54.4
CSS0031251 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006311 5.4e-27 125.2 139 48.9
Lj1g0013867 Lotus japonicus HOM05D000104 ORTHO05D006311 5.4e-27 125.2 116 55.2
SGA_v2.0_scaffold90G27664 Striga asiatica HOM05D000104 ORTHO05D006311 7.1e-27 124.8 128 51.6
COL.COLO4_32665 Corchorus olitorius HOM05D000104 ORTHO05D006311 9.3e-27 124.4 122 51.6
Eucgr.G01447 Eucalyptus grandis HOM05D000104 ORTHO05D006311 9.3e-27 124.4 115 53.9
Sabra04G0093400 Salix brachista HOM05D000104 ORTHO05D006311 9.3e-27 124.4 114 54.4
Thecc.02G099700 Theobroma cacao HOM05D000104 ORTHO05D006311 9.3e-27 124.4 114 54.4
RcHm_v2.0_Chr6g0256991 Rosa chinensis HOM05D000104 ORTHO05D006311 1.2e-26 124.0 115 53.9
THA.LOC104809900 Tarenaya hassleriana HOM05D000104 ORTHO05D006311 1.2e-26 124.0 114 55.3
DCAR_029033 Daucus carota HOM05D000590 ORTHO05D006311 1.6e-26 123.6 116 53.4
VMungo1215G3211 Vigna mungo HOM05D000104 ORTHO05D006311 1.6e-26 123.6 114 53.5
AT3G19210 Arabidopsis thaliana HOM05D000104 ORTHO05D006311 2.1e-26 123.2 118 54.2
CsaV3_3G018560 Cucumis sativus L. HOM05D000104 ORTHO05D006311 2.1e-26 123.2 116 56.9
FAN15G0367 Fragaria x ananassa HOM05D000104 ORTHO05D006311 2.1e-26 123.2 112 54.5
PGR042G0253 Punica granatum HOM05D000104 ORTHO05D006311 2.7e-26 122.9 113 53.1
QL11p036019 Quercus lobata HOM05D000104 ORTHO05D006311 2.7e-26 122.9 114 54.4
Peaxi162Scf00152g00027 Petunia axillaris HOM05D000104 ORTHO05D006311 3.5e-26 122.5 120 52.5
arahy.Tifrunner.gnm1.ann1.1287G1 Arachis hypogaea HOM05D000104 ORTHO05D006311 4.6e-26 122.1 117 53.0
A05p30430 Brassica napus HOM05D000104 ORTHO05D006311 4.6e-26 122.1 114 54.4
Manes.07G082400 Manihot esculenta HOM05D000104 ORTHO05D006311 4.6e-26 122.1 114 57.9
CSS0034041 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006311 6.0e-26 121.7 139 47.5
ECA234G1929 Erigeron canadensis HOM05D000104 ORTHO05D006311 6.0e-26 121.7 120 53.3
BraA05t21881Z Brassica rapa HOM05D000104 ORTHO05D006311 1.0e-25 120.9 114 53.5
MD05G1079700 Malus domestica HOM05D000104 ORTHO05D006311 1.0e-25 120.9 117 51.3
Sc18g0004040 Simmondsia chinensis HOM05D000104 ORTHO05D006311 1.3e-25 120.6 122 51.6
AL3G32590 Arabidopsis lyrata HOM05D000104 ORTHO05D006311 1.8e-25 120.2 118 52.5
Cc02_g18720 Coffea canephora HOM05D000104 ORTHO05D006311 1.8e-25 120.2 118 48.3
MSTRG.20152 Avicennia marina HOM05D000104 ORTHO05D006311 2.3e-25 119.8 117 49.6
BcaB06g25977 Brassica carinata HOM05D000104 ORTHO05D006311 2.3e-25 119.8 114 53.5
BcaC05g28523 Brassica carinata HOM05D000104 ORTHO05D006311 2.3e-25 119.8 114 53.5
C05p46030 Brassica napus HOM05D000104 ORTHO05D006311 2.3e-25 119.8 114 53.5
BolC5t33330H Brassica oleracea HOM05D000104 ORTHO05D006311 2.3e-25 119.8 114 53.5
Sp3g17280 Schrenkiella parvula HOM05D000104 ORTHO05D006311 2.3e-25 119.8 114 52.6
AagrBONN_evm.TU.Sc2ySwM_228.1653 Anthoceros agrestis HOM05D000104 ORTHO05D006311 3.0e-25 119.4 119 47.9
Aqoxy5G01249 Aquilegia oxysepala HOM05D000104 ORTHO05D006311 3.0e-25 119.4 126 51.6
Carub.0003s1904 Capsella rubella HOM05D000104 ORTHO05D006311 3.0e-25 119.4 114 52.6
Hund00332 Selenicereus undatus HOM05D000104 ORTHO05D006311 3.0e-25 119.4 129 47.3
Dinv23617 Davidia involucrata HOM05D000104 ORTHO05D006311 5.1e-25 118.6 137 48.9
Hund06178 Selenicereus undatus HOM05D000104 ORTHO05D006311 5.1e-25 118.6 143 42.7
Aa31LG8G6000 Aethionema arabicum HOM05D000104 ORTHO05D006311 6.7e-25 118.2 123 52.0
TWI31G1026 Tripterygium wilfordii HOM05D000104 ORTHO05D006311 6.7e-25 118.2 116 53.4
Migut.B00341 Erythranthe guttata HOM05D000104 ORTHO05D006311 8.7e-25 117.9 130 49.2
Nitab4.5_0004804g0040 Nicotiana tabacum HOM05D000104 ORTHO05D006311 1.1e-24 117.5 116 50.9
SalBow6G5855 Salvia bowleyana HOM05D000104 ORTHO05D006311 1.1e-24 117.5 119 51.3
Solyc04g056410.3 Solanum lycopersicum HOM05D000104 ORTHO05D006311 1.1e-24 117.5 135 44.4
Actinidia27954 Actinidia chinensis HOM05D000104 ORTHO05D006311 1.9e-24 116.7 123 48.8
CAN.G46.36 Capsicum annuum HOM05D000104 ORTHO05D006311 1.9e-24 116.7 122 49.2
Thhalv10020013m.g Eutrema salsugineum HOM05D000104 ORTHO05D006311 1.9e-24 116.7 118 51.7
vmacro19498 Vaccinium macrocarpon HOM05D000104 ORTHO05D006311 2.5e-24 116.3 116 52.6
DCAR_029051 Daucus carota HOM05D000104 ORTHO05D006311 3.3e-24 115.9 132 45.5
Nitab4.5_0000292g0040 Nicotiana tabacum HOM05D000104 ORTHO05D006311 3.3e-24 115.9 116 50.9
EL10Ac9g21836 Beta vulgaris HOM05D000104 ORTHO05D006311 5.6e-24 115.2 125 47.2
HanXRQChr16g0497611 Helianthus annuus HOM05D000104 ORTHO05D006311 7.4e-24 114.8 113 51.3
Ciclev10027772m.g Citrus clementina HOM05D000104 ORTHO05D006311 1.6e-23 113.6 114 50.0
MELO3C019510.2 Cucumis melo HOM05D000104 ORTHO05D006311 1.6e-23 113.6 130 48.5
TAR628G1742 Trochodendron aralioides HOM05D000104 ORTHO05D006311 1.6e-23 113.6 72 72.2
CARHR094620 Cardamine hirsuta HOM05D000104 ORTHO05D006311 2.8e-23 112.8 118 50.8
Sopen04g025310 Solanum pennellii HOM05D000104 ORTHO05D006311 2.8e-23 112.8 135 43.7
Lj5A209G69 Lonicera japonica HOM05D000104 ORTHO05D006311 8.1e-23 111.3 136 46.3
Lsat_1_v5_gn_5_112800 Lactuca sativa HOM05D000104 ORTHO05D006311 1.4e-22 110.5 118 53.4
SHI30983 Sapria himalayana HOM05D000104 ORTHO05D006311 2.4e-22 109.8 116 51.7
SMO137G0183 Selaginella moellendorffii HOM05D000104 ORTHO05D006311 4.0e-22 109.0 116 47.4
CDE06G0834 Ceratophyllum demersum HOM05D000104 ORTHO05D006311 5.3e-22 108.6 80 62.5
Pp3c16_6690 Physcomitrium patens HOM05D000104 ORTHO05D006311 1.2e-21 107.5 119 44.5
AUR62011445 Chenopodium quinoa HOM05D000104 ORTHO05D006311 7.6e-21 104.8 121 46.3
Pp3c5_12730 Physcomitrium patens HOM05D000104 ORTHO05D006311 7.6e-21 104.8 118 44.1
AUR62016616 Chenopodium quinoa HOM05D000104 ORTHO05D006311 1.3e-20 104.0 122 45.9
ClCG05G010010 Citrullus lanatus HOM05D000104 ORTHO05D006311 2.1e-18 96.7 116 49.1
CBR_g70715 Chara braunii HOM05D000104 ORTHO05D006311 1.0e-17 94.4 132 37.1
QL09p040364 Quercus lobata HOM05D000370 ORTHO05D001335 1.5e-16 90.5 100 44.0
SEGI_34578 Sequoiadendron giganteum HOM05D003998 ORTHO05D005144 4.2e-11 72.4 44 72.7
PRCOL_00002118 Prasinoderma coloniale HOM05D000104 ORTHO05D006311 8.2e-07 58.2 51 47.1
SEGI_27526 Sequoiadendron giganteum HOM05D001775 ORTHO05D009111 8.2e-07 58.2 43 62.8
MCO14G348 Micromonas commoda HOM05D000104 ORTHO05D006311 1.1e-06 57.8 62 46.8
SHI05368 Sapria himalayana HOM05D000104 ORTHO05D006311 1.1e-06 57.8 96 33.3
Cre10.g430950 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D006311 6.9e-06 55.1 46 47.8


User provided reference genes

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