Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21122 Sequoiadendron giganteum HOM05D004852 ORTHO05D006128 5.1e-196 687.6 353 100.0
EL10Ac9g22261 Beta vulgaris HOM05D004852 ORTHO05D006128 6.5e-58 228.8 334 43.1
Sopen01g049730 Solanum pennellii HOM05D004852 ORTHO05D006128 1.2e-56 224.6 340 43.5
SalBow3G4263 Salvia bowleyana HOM05D004852 ORTHO05D006128 2.7e-56 223.4 356 42.4
COL.COLO4_32578 Corchorus olitorius HOM05D004852 ORTHO05D006128 3.6e-56 223.0 351 43.3
THA.LOC104812918 Tarenaya hassleriana HOM05D004852 ORTHO05D006128 1.0e-55 221.5 353 45.0
Ciclev10027730m.g Citrus clementina HOM05D004852 ORTHO05D006128 1.4e-55 221.1 330 45.8
Eucgr.I01096 Eucalyptus grandis HOM05D004852 ORTHO05D006128 3.0e-55 219.9 348 42.0
Ca_24346_v3 Cicer arietinum L. HOM05D004852 ORTHO05D006128 4.0e-55 219.5 348 41.4
Gohir.A13G044100 Gossypium hirsutum HOM05D004852 ORTHO05D006128 5.2e-55 219.2 342 43.3
Gorai.013G047900 Gossypium raimondii HOM05D004852 ORTHO05D006128 5.2e-55 219.2 371 42.3
Gohir.D13G043200 Gossypium hirsutum HOM05D004852 ORTHO05D006128 6.8e-55 218.8 362 42.5
Nn1g04670 Nelumbo nucifera HOM05D004852 ORTHO05D006128 6.8e-55 218.8 349 42.1
Hma1.2p1_2341F.1_g320320 Hydrangea macrophylla HOM05D004852 ORTHO05D006128 2.6e-54 216.9 342 41.8
Hma1.2p1_2341F.1_g320330 Hydrangea macrophylla HOM05D004852 ORTHO05D006128 2.6e-54 216.9 342 41.8
TAR376G0480 Trochodendron aralioides HOM05D004852 ORTHO05D006128 3.4e-54 216.5 367 41.7
Thecc.02G110100 Theobroma cacao HOM05D004852 ORTHO05D006128 4.4e-54 216.1 346 42.8
CANSAT25G3392 Cannabis sativa HOM05D004852 ORTHO05D006128 5.7e-54 215.7 334 43.4
AUR62039064 Chenopodium quinoa HOM05D004852 ORTHO05D006128 5.7e-54 215.7 341 42.8
PSO541G3304 Papaver somniferum HOM05D004852 ORTHO05D006128 5.7e-54 215.7 351 41.6
Migut.N01158 Erythranthe guttata HOM05D004852 ORTHO05D006128 9.8e-54 214.9 340 42.6
QL11p033063 Quercus lobata HOM05D004852 ORTHO05D006128 9.8e-54 214.9 337 43.0
Migut.O00601 Erythranthe guttata HOM05D004852 ORTHO05D006128 2.2e-53 213.8 340 42.6
FvH4_2g04972 Fragaria vesca HOM05D004852 ORTHO05D006128 2.8e-53 213.4 339 44.5
Manes.07G069666 Manihot esculenta HOM05D004852 ORTHO05D006128 3.7e-53 213.0 331 42.3
TWI79G0830 Tripterygium wilfordii HOM05D004852 ORTHO05D006128 3.7e-53 213.0 347 41.8
GSVIVG01037905001 Vitis vinifera HOM05D004852 ORTHO05D006128 8.3e-53 211.8 345 42.6
CiPaw.05G012900 Carya illinoinensis HOM05D004852 ORTHO05D006128 1.1e-52 211.5 344 43.0
Cc02_g19340 Coffea canephora HOM05D004852 ORTHO05D006128 1.1e-52 211.5 360 41.9
Lj5A215G62 Lonicera japonica HOM05D004852 ORTHO05D006128 1.1e-52 211.5 358 43.9
Atru.chr5.2475 Acer truncatum HOM05D004852 ORTHO05D006128 2.4e-52 210.3 341 42.8
MD10G1098400 Malus domestica HOM05D004852 ORTHO05D006128 3.1e-52 209.9 347 42.4
RcHm_v2.0_Chr6g0254741 Rosa chinensis HOM05D004852 ORTHO05D006128 3.1e-52 209.9 362 42.5
Sabra09G0072700 Salix brachista HOM05D004852 ORTHO05D006128 3.1e-52 209.9 340 43.8
CsaV3_7G008100 Cucumis sativus L. HOM05D004852 ORTHO05D006128 5.4e-52 209.1 391 40.7
Dinv42201 Davidia involucrata HOM05D004852 ORTHO05D006128 5.4e-52 209.1 337 43.9
Aqoxy6G02842 Aquilegia oxysepala HOM05D004852 ORTHO05D006128 7.0e-52 208.8 370 41.1
MELO3C005497.2 Cucumis melo HOM05D004852 ORTHO05D006128 7.0e-52 208.8 196 60.2
PGR142G1976 Punica granatum HOM05D004852 ORTHO05D006128 9.1e-52 208.4 356 41.3
Prupe.8G136700 Prunus persica HOM05D004852 ORTHO05D006128 1.2e-51 208.0 343 42.0
SGA_v2.0_scaffold106G30732 Striga asiatica HOM05D004852 ORTHO05D006128 1.2e-51 208.0 338 39.6
Nitab4.5_0004326g0020 Nicotiana tabacum HOM05D004852 ORTHO05D006128 1.6e-51 207.6 344 43.0
Duzib205G0175 Durio zibethinus HOM05D004852 ORTHO05D006128 2.0e-51 207.2 214 55.1
Sc18g0005570 Simmondsia chinensis HOM05D004852 ORTHO05D006128 2.0e-51 207.2 353 40.8
ATR0205G027 Amborella trichopoda HOM05D004852 ORTHO05D006128 2.7e-51 206.8 223 51.1
Glyma.01G243900 Glycine max HOM05D004852 ORTHO05D006128 2.7e-51 206.8 333 41.7
HanXRQChr17g0570571 Helianthus annuus HOM05D004852 ORTHO05D006128 4.5e-51 206.1 337 41.5
Potri.009G094400 Populus trichocarpa HOM05D004852 ORTHO05D006128 4.5e-51 206.1 338 43.2
Carub.0008s0351 Capsella rubella HOM05D004852 ORTHO05D006128 5.9e-51 205.7 337 42.7
BcaNung07102 Brassica carinata HOM05D004852 ORTHO05D006128 7.7e-51 205.3 330 42.4
A06p46930 Brassica napus HOM05D004852 ORTHO05D006128 1.0e-50 204.9 330 40.3
BraA06t27566Z Brassica rapa HOM05D004852 ORTHO05D006128 1.0e-50 204.9 330 40.3
Nitab4.5_0001143g0010 Nicotiana tabacum HOM05D004852 ORTHO05D006128 1.7e-50 204.1 333 43.2
Phvul.002G053200 Phaseolus vulgaris HOM05D004852 ORTHO05D006128 1.7e-50 204.1 322 43.2
Psat4g228520 Pisum sativum HOM05D004852 ORTHO05D006128 2.3e-50 203.8 349 41.0
CSS0042044 Camellia sinensis var. sinensis HOM05D004852 ORTHO05D006128 2.9e-50 203.4 358 39.9
TPR.G21613 Trifolium pratense HOM05D004852 ORTHO05D006128 3.8e-50 203.0 350 39.1
unitig_26.g10234 Utricularia gibba HOM05D004852 ORTHO05D006128 6.5e-50 202.2 331 40.2
Sp2g09590 Schrenkiella parvula HOM05D004852 ORTHO05D006128 8.6e-50 201.8 344 41.3
Aa31LG9G8420 Aethionema arabicum HOM05D004852 ORTHO05D006128 1.1e-49 201.4 346 40.5
C07p27720 Brassica napus HOM05D004852 ORTHO05D006128 1.1e-49 201.4 331 40.8
BcaNung06822 Brassica carinata HOM05D004852 ORTHO05D006128 1.5e-49 201.1 331 40.8
BolC7t43304H Brassica oleracea HOM05D004852 ORTHO05D006128 1.5e-49 201.1 331 41.1
FAN15G1156 Fragaria x ananassa HOM05D004852 ORTHO05D006128 1.5e-49 201.1 335 44.2
Medtr5g004960 Medicago truncatula HOM05D004852 ORTHO05D006128 1.9e-49 200.7 335 39.7
Cpa.g.sc106.106 Carica papaya HOM05D004852 ORTHO05D006128 4.2e-49 199.5 342 41.5
arahy.Tifrunner.gnm1.ann1.F6JX6R Arachis hypogaea HOM05D004852 ORTHO05D006128 1.2e-48 198.0 339 39.8
vmacro19454 Vaccinium macrocarpon HOM05D004852 ORTHO05D006128 1.6e-48 197.6 364 36.8
Actinidia05501 Actinidia chinensis HOM05D004852 ORTHO05D006128 2.1e-48 197.2 335 41.8
Thhalv10000766m.g Eutrema salsugineum HOM05D004852 ORTHO05D006128 1.4e-47 194.5 336 41.1
AL8G14780 Arabidopsis lyrata HOM05D004852 ORTHO05D006128 1.8e-47 194.1 344 40.7
Sed0001586 Sechium edule HOM05D004852 ORTHO05D006128 1.8e-47 194.1 380 38.9
AT5G44750 Arabidopsis thaliana HOM05D004852 ORTHO05D006128 2.3e-47 193.7 337 41.5
Lalb_Chr09g0319581 Lupinus albus HOM05D004852 ORTHO05D006128 3.0e-47 193.4 342 39.8
Hund06310 Selenicereus undatus HOM05D004852 ORTHO05D006128 3.0e-47 193.4 311 41.2
HPP92_017010 Vanilla planifolia HOM05D004852 ORTHO05D006128 3.0e-47 193.4 313 41.2
Solyc01g107510.3 Solanum lycopersicum HOM05D004852 ORTHO05D006128 4.0e-47 193.0 303 42.9
DCAR_029088 Daucus carota HOM05D004852 ORTHO05D006128 8.9e-47 191.8 378 38.9
HPP92_016994 Vanilla planifolia HOM05D004852 ORTHO05D006128 1.2e-46 191.4 312 40.7
CAN.G606.8 Capsicum annuum HOM05D004852 ORTHO05D006128 7.5e-46 188.7 304 41.4
ECA236G4936 Erigeron canadensis HOM05D004852 ORTHO05D006128 1.3e-45 188.0 313 40.3
ClCG02G006490 Citrullus lanatus HOM05D004852 ORTHO05D006128 1.1e-44 184.9 380 38.4
Zm00001eb226110 Zea mays HOM05D004852 ORTHO05D006128 5.4e-44 182.6 321 39.3
Rhsim05G0088900 Rhododendron simsii HOM05D004852 ORTHO05D006128 7.0e-44 182.2 384 35.9
Lj1g0003104 Lotus japonicus HOM05D004852 ORTHO05D006128 1.6e-43 181.0 308 40.6
Oeu044275.2 Olea europaea HOM05D004852 ORTHO05D006128 2.0e-43 180.6 397 36.5
MBI16_g23720_MAGBIO Magnolia biondii HOM05D004852 ORTHO05D006128 5.6e-41 172.6 359 37.3
Rhsim05G0088800 Rhododendron simsii HOM05D004852 ORTHO05D006128 7.3e-41 172.2 304 38.2
Pp3c22_4740 Physcomitrium patens HOM05D004852 ORTHO05D006128 3.6e-40 169.9 363 34.7
SMO235G0070 Selaginella moellendorffii HOM05D004852 ORTHO05D006128 4.0e-39 166.4 343 37.3
SMO347G0466 Selaginella moellendorffii HOM05D004852 ORTHO05D006128 5.2e-39 166.0 343 38.2
CDE01G0038 Ceratophyllum demersum HOM05D004852 ORTHO05D006128 8.9e-39 165.2 344 35.8
AagrBONN_evm.TU.Sc2ySwM_228.1916 Anthoceros agrestis HOM05D004852 ORTHO05D006128 4.4e-38 162.9 353 36.0
Os06g0691000 Oryza sativa ssp. japonica HOM05D004852 ORTHO05D006128 1.3e-37 161.4 353 33.1
arahy.Tifrunner.gnm1.ann1.9X93LG Arachis hypogaea HOM05D004852 ORTHO05D006128 7.0e-36 155.6 341 35.8
AUR62010324 Chenopodium quinoa HOM05D004852 ORTHO05D006128 1.2e-35 154.8 302 38.7
Mapoly0216s0004 Marchantia polymorpha HOM05D004852 ORTHO05D006128 1.6e-35 154.5 367 34.1
Lsat_1_v5_gn_7_85781 Lactuca sativa HOM05D004852 ORTHO05D006128 2.1e-32 144.1 259 39.4
Peaxi162Scf00016g02441 Petunia axillaris HOM05D004852 ORTHO05D006128 2.6e-30 137.1 310 36.8
Ah.01g018340 Amaranthus hybridus HOM05D004852 ORTHO05D006128 3.4e-30 136.7 248 39.1
Cre12.g550800 Chlamydomonas reinhardtii HOM05D004852 ORTHO05D006128 2.6e-22 110.5 152 38.8
CDE02G3140 Ceratophyllum demersum HOM05D004852 ORTHO05D006128 3.5e-19 100.1 59 76.3
MD05G1091100 Malus domestica HOM05D004852 ORTHO05D006128 1.0e-18 98.6 100 53.0
PRCOL_00001737 Prasinoderma coloniale HOM05D004852 ORTHO05D006128 7.6e-14 82.4 124 37.9
Atru.chr3.2810 Acer truncatum HOM05D004852 ORTHO05D006128 9.9e-14 82.0 208 36.1
MCO11G117 Micromonas commoda HOM05D004852 ORTHO05D006128 2.9e-13 80.5 99 38.4
CBR_g29912 Chara braunii HOM05D004852 ORTHO05D006128 3.9e-10 70.1 87 47.1
Cfa025442 Carpinus fangiana HOM05D004852 ORTHO05D006128 9.0e-07 58.9 89 38.2


User provided reference genes

Program Settings