Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19763 Sequoiadendron giganteum HOM05D005823 ORTHO05D007536 1.3e-96 356.3 167 100.0
Mapoly0060s0015 Marchantia polymorpha HOM05D005823 ORTHO05D007536 2.8e-35 152.5 89 73.0
ATR0730G038 Amborella trichopoda HOM05D005823 ORTHO05D007536 1.4e-31 140.2 89 71.9
AagrBONN_evm.TU.Sc2ySwM_228.3021 Anthoceros agrestis HOM05D005823 ORTHO05D007536 1.4e-31 140.2 88 71.6
MBI16_g05631_MAGBIO Magnolia biondii HOM05D005823 ORTHO05D007536 1.6e-30 136.7 86 70.9
TAR374G0440 Trochodendron aralioides HOM05D005823 ORTHO05D007536 6.1e-30 134.8 80 72.5
AUR62019725 Chenopodium quinoa HOM05D005823 ORTHO05D007536 7.9e-30 134.4 90 65.6
Actinidia06018 Actinidia chinensis HOM05D005823 ORTHO05D007536 2.3e-29 132.9 79 72.2
Manes.17G116600 Manihot esculenta HOM05D005823 ORTHO05D007536 8.8e-29 131.0 89 65.2
SMO052G0001 Selaginella moellendorffii HOM05D005823 ORTHO05D007536 8.8e-29 131.0 78 73.1
Dinv35071 Davidia involucrata HOM05D005823 ORTHO05D007536 1.1e-28 130.6 79 72.2
Hma1.2p1_0858F.1_g229370 Hydrangea macrophylla HOM05D005823 ORTHO05D007536 1.1e-28 130.6 79 70.9
Nn4g22771 Nelumbo nucifera HOM05D005823 ORTHO05D007536 1.5e-28 130.2 87 64.4
Oeu054687.1 Olea europaea HOM05D005823 ORTHO05D007536 1.5e-28 130.2 80 68.8
Actinidia36091 Actinidia chinensis HOM05D005823 ORTHO05D007536 2.0e-28 129.8 79 70.9
DCAR_015046 Daucus carota HOM05D005823 ORTHO05D007536 2.0e-28 129.8 90 61.1
SMO119G0254 Selaginella moellendorffii HOM05D005823 ORTHO05D007536 2.0e-28 129.8 78 71.8
Atru.chr6.2309 Acer truncatum HOM05D005823 ORTHO05D007536 4.4e-28 128.6 90 62.2
Lsat_1_v5_gn_2_92000 Lactuca sativa HOM05D005823 ORTHO05D007536 4.4e-28 128.6 80 65.0
CSS0040897 Camellia sinensis var. sinensis HOM05D005823 ORTHO05D007536 5.7e-28 128.3 79 68.4
CDE11G0210 Ceratophyllum demersum HOM05D005823 ORTHO05D007536 5.7e-28 128.3 86 65.1
EL10Ac4g08593 Beta vulgaris HOM05D005823 ORTHO05D007536 7.4e-28 127.9 89 65.2
Lj7A592T43 Lonicera japonica HOM05D005823 ORTHO05D007536 7.4e-28 127.9 80 66.2
Ah.06g187250 Amaranthus hybridus HOM05D005823 ORTHO05D007536 9.7e-28 127.5 89 65.2
vmacro05834 Vaccinium macrocarpon HOM05D005823 ORTHO05D007536 9.7e-28 127.5 79 69.6
Sabra16G0228500 Salix brachista HOM05D005823 ORTHO05D007536 1.7e-27 126.7 79 65.8
CiPaw.03G038900 Carya illinoinensis HOM05D005823 ORTHO05D007536 2.2e-27 126.3 79 68.4
Cc07_g02150 Coffea canephora HOM05D005823 ORTHO05D007536 2.2e-27 126.3 80 67.5
Nitab4.5_0004753g0050 Nicotiana tabacum HOM05D005823 ORTHO05D007536 2.2e-27 126.3 80 66.2
SalBow1G1924 Salvia bowleyana HOM05D005823 ORTHO05D007536 2.2e-27 126.3 80 67.5
Hund20083 Selenicereus undatus HOM05D005823 ORTHO05D007536 2.2e-27 126.3 80 67.5
Rhsim10G0021100 Rhododendron simsii HOM05D005823 ORTHO05D007536 2.8e-27 125.9 79 68.4
Nitab4.5_0004348g0040 Nicotiana tabacum HOM05D005823 ORTHO05D007536 3.7e-27 125.6 80 66.2
Sc03g0007950 Simmondsia chinensis HOM05D005823 ORTHO05D007536 4.8e-27 125.2 79 69.6
Aa31LG5G10620 Aethionema arabicum HOM05D005823 ORTHO05D007536 6.3e-27 124.8 80 65.0
CAN.G544.5 Capsicum annuum HOM05D005823 ORTHO05D007536 6.3e-27 124.8 80 63.8
Thhalv10020379m.g Eutrema salsugineum HOM05D005823 ORTHO05D007536 6.3e-27 124.8 80 65.0
Pp3c16_6290 Physcomitrium patens HOM05D005823 ORTHO05D007536 6.3e-27 124.8 88 60.2
QL02p076317 Quercus lobata HOM05D005823 ORTHO05D007536 6.3e-27 124.8 77 70.1
PSO832G4481 Papaver somniferum HOM05D005823 ORTHO05D007536 8.2e-27 124.4 79 65.8
Sed0002272 Sechium edule HOM05D005823 ORTHO05D007536 8.2e-27 124.4 79 67.1
PGSC0003DMG400030092 Solanum tuberosum HOM05D005823 ORTHO05D007536 8.2e-27 124.4 80 65.0
SGA_v2.0_scaffold135G34877 Striga asiatica HOM05D005823 ORTHO05D007536 8.2e-27 124.4 79 68.4
Carub.0003s0058 Capsella rubella HOM05D005823 ORTHO05D007536 1.1e-26 124.0 80 62.5
AUR62035471 Chenopodium quinoa HOM05D005823 ORTHO05D007536 1.1e-26 124.0 77 67.5
BcaC01g04522 Brassica carinata HOM05D005823 ORTHO05D007536 1.4e-26 123.6 80 63.8
A03p32520 Brassica napus HOM05D005823 ORTHO05D007536 1.4e-26 123.6 80 63.8
C03p39600 Brassica napus HOM05D005823 ORTHO05D007536 1.4e-26 123.6 80 63.8
BolC3t16226H Brassica oleracea HOM05D005823 ORTHO05D007536 1.4e-26 123.6 80 63.8
BraA03t12421Z Brassica rapa HOM05D005823 ORTHO05D007536 1.4e-26 123.6 80 63.8
PGR142G1348 Punica granatum HOM05D005823 ORTHO05D007536 1.4e-26 123.6 80 66.2
Sp3g00560 Schrenkiella parvula HOM05D005823 ORTHO05D007536 1.4e-26 123.6 80 63.8
GSVIVG01032464001 Vitis vinifera HOM05D005823 ORTHO05D007536 1.4e-26 123.6 80 67.5
Migut.H00112 Erythranthe guttata HOM05D005823 ORTHO05D007536 1.8e-26 123.2 80 65.0
Potri.001G349000 Populus trichocarpa HOM05D005823 ORTHO05D007536 1.8e-26 123.2 79 64.6
AL3G10660 Arabidopsis lyrata HOM05D005823 ORTHO05D007536 3.1e-26 122.5 80 62.5
Gohir.D07G227600 Gossypium hirsutum HOM05D005823 ORTHO05D007536 3.1e-26 122.5 79 65.8
Gorai.001G262500 Gossypium raimondii HOM05D005823 ORTHO05D007536 3.1e-26 122.5 79 65.8
CsaV3_3G042460 Cucumis sativus L. HOM05D005823 ORTHO05D007536 4.1e-26 122.1 79 65.8
AT3G01510 Arabidopsis thaliana HOM05D005823 ORTHO05D007536 5.3e-26 121.7 80 62.5
MELO3C009960.2 Cucumis melo HOM05D005823 ORTHO05D007536 6.9e-26 121.3 79 64.6
Prupe.3G285700 Prunus persica HOM05D005823 ORTHO05D007536 6.9e-26 121.3 89 61.8
HPP92_024322 Vanilla planifolia HOM05D005823 ORTHO05D007536 6.9e-26 121.3 79 65.8
Zm00001eb042540 Zea mays HOM05D005823 ORTHO05D007536 6.9e-26 121.3 89 58.4
CARHR075440 Cardamine hirsuta HOM05D005823 ORTHO05D007536 9.1e-26 120.9 80 63.8
Duzib187G0863 Durio zibethinus HOM05D005823 ORTHO05D007536 9.1e-26 120.9 79 65.8
ClCG10G014190 Citrullus lanatus HOM05D005823 ORTHO05D007536 1.2e-25 120.6 79 64.6
TWI36G1575 Tripterygium wilfordii HOM05D005823 ORTHO05D007536 1.5e-25 120.2 79 60.8
CANSAT64G0786 Cannabis sativa HOM05D005823 ORTHO05D007536 2.0e-25 119.8 80 62.5
Eucgr.I01789 Eucalyptus grandis HOM05D005823 ORTHO05D007536 2.0e-25 119.8 78 65.4
Solyc12g062250.2 Solanum lycopersicum HOM05D005823 ORTHO05D007536 2.0e-25 119.8 80 62.5
Sopen12g025140 Solanum pennellii HOM05D005823 ORTHO05D007536 2.0e-25 119.8 80 62.5
Cpa.g.sc215.12 Carica papaya HOM05D005823 ORTHO05D007536 2.6e-25 119.4 80 63.8
PSO063G0513 Papaver somniferum HOM05D005823 ORTHO05D007536 2.6e-25 119.4 79 64.6
Gohir.A07G220900 Gossypium hirsutum HOM05D005823 ORTHO05D007536 3.4e-25 119.0 79 64.6
COL.COLO4_28986 Corchorus olitorius HOM05D005823 ORTHO05D007536 4.5e-25 118.6 80 61.2
Os08g0379300 Oryza sativa ssp. japonica HOM05D005823 ORTHO05D007536 4.5e-25 118.6 79 62.0
unitig_62.g23151 Utricularia gibba HOM05D005823 ORTHO05D007536 5.9e-25 118.2 80 61.2
Aqoxy3G02952 Aquilegia oxysepala HOM05D005823 ORTHO05D007536 7.7e-25 117.9 79 59.5
TPR.G30824 Trifolium pratense HOM05D005823 ORTHO05D007536 1.0e-24 117.5 80 61.2
THA.LOC104821071 Tarenaya hassleriana HOM05D005823 ORTHO05D007536 1.3e-24 117.1 82 61.0
ECA238G2958 Erigeron canadensis HOM05D005823 ORTHO05D007536 1.7e-24 116.7 80 62.5
RcHm_v2.0_Chr2g0172181 Rosa chinensis HOM05D005823 ORTHO05D007536 2.2e-24 116.3 79 65.8
Glyma.16G073500 Glycine max HOM05D005823 ORTHO05D007536 2.9e-24 115.9 80 61.2
Glyma.19G069800 Glycine max HOM05D005823 ORTHO05D007536 2.9e-24 115.9 80 61.2
Solyc12g062260.2 Solanum lycopersicum HOM05D005823 ORTHO05D007536 2.9e-24 115.9 80 60.0
Lsat_1_v5_gn_1_56220 Lactuca sativa HOM05D005823 ORTHO05D007536 3.8e-24 115.5 80 58.8
Lsat_1_v5_gn_4_122721 Lactuca sativa HOM05D005823 ORTHO05D007536 3.8e-24 115.5 80 58.8
Lsat_1_v5_gn_8_101260 Lactuca sativa HOM05D005823 ORTHO05D007536 3.8e-24 115.5 80 58.8
Lsat_1_v5_gn_9_122760 Lactuca sativa HOM05D005823 ORTHO05D007536 3.8e-24 115.5 80 58.8
Sopen12g025160 Solanum pennellii HOM05D005823 ORTHO05D007536 5.0e-24 115.2 80 61.2
MD09G1032300 Malus domestica HOM05D005823 ORTHO05D007536 6.5e-24 114.8 79 63.3
RcHm_v2.0_Chr2g0172101 Rosa chinensis HOM05D005823 ORTHO05D007536 6.5e-24 114.8 79 64.6
Ca_14484_v3 Cicer arietinum L. HOM05D005823 ORTHO05D007536 8.5e-24 114.4 79 62.0
HanXRQChr14g0450321 Helianthus annuus HOM05D005823 ORTHO05D007536 8.5e-24 114.4 80 58.8
Thecc.04G010400 Theobroma cacao HOM05D005823 ORTHO05D007536 8.5e-24 114.4 80 61.2
Psat3g162320 Pisum sativum HOM05D005823 ORTHO05D007536 1.4e-23 113.6 80 60.0
Lalb_Chr10g0093861 Lupinus albus HOM05D005823 ORTHO05D007536 2.5e-23 112.8 80 56.2
FvH4_6g50790 Fragaria vesca HOM05D005823 ORTHO05D007536 4.2e-23 112.1 79 63.3
FAN09G0265 Fragaria x ananassa HOM05D005823 ORTHO05D007536 4.2e-23 112.1 79 63.3
FAN14G3736 Fragaria x ananassa HOM05D005823 ORTHO05D007536 4.2e-23 112.1 79 63.3
Peaxi162Scf00700g00625 Petunia axillaris HOM05D005823 ORTHO05D007536 5.5e-23 111.7 78 62.8
VMungo1383G2893 Vigna mungo HOM05D005823 ORTHO05D007536 7.2e-23 111.3 80 58.8
Lj1g0008834 Lotus japonicus HOM05D005823 ORTHO05D007536 1.2e-22 110.5 80 58.8
Phvul.008G155300 Phaseolus vulgaris HOM05D005823 ORTHO05D007536 1.2e-22 110.5 80 57.5
FAN05G1760 Fragaria x ananassa HOM05D005823 ORTHO05D007536 8.0e-22 107.8 79 60.8
arahy.Tifrunner.gnm1.ann1.AB8GL3 Arachis hypogaea HOM05D005823 ORTHO05D007536 4.4e-20 102.1 94 48.9
CBR_g34939 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-20 102.1 72 56.9
arahy.Tifrunner.gnm1.ann1.1I70XP Arachis hypogaea HOM05D005823 ORTHO05D007536 4.8e-19 98.6 78 53.8
FAN02G0427 Fragaria x ananassa HOM05D005823 ORTHO05D007536 6.3e-19 98.2 68 61.8
Ciclev10017987m.g Citrus clementina HOM05D005823 ORTHO05D007536 1.6e-17 93.6 81 53.1
Manes.05G158800 Manihot esculenta HOM05D005823 ORTHO05D007536 1.0e-16 90.9 66 63.6
Lsat_1_v5_gn_6_18441 Lactuca sativa HOM05D005823 ORTHO05D007536 1.9e-15 86.7 59 57.6
A03p28560 Brassica napus HOM05D005823 ORTHO05D007536 4.4e-12 75.5 55 54.5
Hma1.2p1_0858F.1_g229360 Hydrangea macrophylla HOM05D005823 ORTHO05D007536 6.3e-11 71.6 39 74.4
SEGI_21925 Sequoiadendron giganteum HOM05D001202 ORTHO05D001728 1.6e-09 67.0 99 35.4
A03p32540 Brassica napus HOM05D005823 ORTHO05D007536 2.9e-08 62.8 41 61.0
BraA03t12423Z Brassica rapa HOM05D005823 ORTHO05D007536 2.9e-08 62.8 41 61.0
Medtr7g034465 Medicago truncatula HOM05D005823 ORTHO05D007536 2.9e-08 62.8 41 58.5
CBR_g4892 Chara braunii HOM05D001202 ORTHO05D001728 6.5e-08 61.6 83 39.8
Eucgr.J00639 Eucalyptus grandis HOM05D001202 ORTHO05D001728 6.5e-08 61.6 97 33.0
MCO11G921 Micromonas commoda HOM05D001942 ORTHO05D001996 1.1e-07 60.8 130 30.0
Cre12.g484350 Chlamydomonas reinhardtii HOM05D001942 ORTHO05D001996 2.5e-07 59.7 75 40.0
Oeu044428.1 Olea europaea HOM05D001202 ORTHO05D001728 3.2e-07 59.3 84 35.7
Oeu044429.1 Olea europaea HOM05D001202 ORTHO05D001728 3.2e-07 59.3 84 35.7
PSO339G1837 Papaver somniferum HOM05D001202 ORTHO05D001728 4.2e-07 58.9 97 30.9
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 4.2e-07 58.9 95 33.7
MSTRG.22820 Avicennia marina HOM05D001942 ORTHO05D001996 5.5e-07 58.5 75 37.3
Cpa.g.sc34.219 Carica papaya HOM05D001202 ORTHO05D001728 5.5e-07 58.5 84 35.7
Duzib160G0433 Durio zibethinus HOM05D001202 ORTHO05D001728 5.5e-07 58.5 83 36.1
PSO384G0704 Papaver somniferum HOM05D001202 ORTHO05D001728 5.5e-07 58.5 97 30.9
Duzib235G0098 Durio zibethinus HOM05D001202 ORTHO05D001728 7.2e-07 58.2 83 36.1
Nitab4.5_0001296g0070 Nicotiana tabacum HOM05D001202 ORTHO05D001728 7.2e-07 58.2 83 33.7
Duzib168G1552 Durio zibethinus HOM05D001202 ORTHO05D001728 9.4e-07 57.8 83 34.9
Manes.08G069900 Manihot esculenta HOM05D001202 ORTHO05D001728 9.4e-07 57.8 83 36.1
Thecc.09G339400 Theobroma cacao HOM05D001202 ORTHO05D001728 9.4e-07 57.8 85 32.9
COL.COLO4_31934 Corchorus olitorius HOM05D001202 ORTHO05D001728 1.2e-06 57.4 83 36.1
Gohir.A06G204200 Gossypium hirsutum HOM05D001202 ORTHO05D001728 1.2e-06 57.4 83 36.1
Thecc.06G240100 Theobroma cacao HOM05D001202 ORTHO05D001728 1.2e-06 57.4 83 36.1
TWI31G0264 Tripterygium wilfordii HOM05D001202 ORTHO05D001728 1.2e-06 57.4 75 37.3
HPP92_000649 Vanilla planifolia HOM05D001202 ORTHO05D001728 1.2e-06 57.4 83 34.9
HPP92_000697 Vanilla planifolia HOM05D001202 ORTHO05D001728 1.2e-06 57.4 83 34.9
Gohir.D06G217300 Gossypium hirsutum HOM05D001202 ORTHO05D001728 1.6e-06 57.0 83 36.1
Gorai.010G248900 Gossypium raimondii HOM05D001202 ORTHO05D001728 1.6e-06 57.0 83 36.1
Lj2A257T61 Lonicera japonica HOM05D001202 ORTHO05D001728 1.6e-06 57.0 83 34.9
Lj2C257T7 Lonicera japonica HOM05D001202 ORTHO05D001728 1.6e-06 57.0 83 34.9
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 2.1e-06 56.6 74 36.5
GSVIVG01037416001 Vitis vinifera HOM05D001202 ORTHO05D001728 2.1e-06 56.6 83 34.9
MBI19_g10812_MAGBIO Magnolia biondii HOM05D001202 ORTHO05D001728 2.7e-06 56.2 83 34.9
SalBow8G2450 Salvia bowleyana HOM05D001202 ORTHO05D001728 2.7e-06 56.2 71 39.4
COL.COLO4_18344 Corchorus olitorius HOM05D001202 ORTHO05D001728 3.6e-06 55.8 85 34.1
Haze_23690 Corylus avellana HOM05D001202 ORTHO05D001728 3.6e-06 55.8 85 34.1
Sabra09G0013300 Salix brachista HOM05D001202 ORTHO05D001728 3.6e-06 55.8 84 31.0
vmacro03614 Vaccinium macrocarpon HOM05D001202 ORTHO05D001728 3.6e-06 55.8 83 33.7
Dinv26605 Davidia involucrata HOM05D001202 ORTHO05D001728 4.7e-06 55.5 75 34.7
MCO01G321 Micromonas commoda HOM05D001202 ORTHO05D001728 4.7e-06 55.5 70 40.0
Potri.006G005800 Populus trichocarpa HOM05D001202 ORTHO05D001728 4.7e-06 55.5 83 36.1
BcaC07g38469 Brassica carinata HOM05D001942 ORTHO05D001996 6.1e-06 55.1 128 27.3
SHI25152 Sapria himalayana HOM05D001202 ORTHO05D001728 6.1e-06 55.1 104 31.7
DCAR_018972 Daucus carota HOM05D001202 ORTHO05D001728 8.0e-06 54.7 97 30.9


User provided reference genes

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