Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 5.4e-253 877.1 419 100.0
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 4.6e-143 511.9 336 71.4
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 1.3e-142 510.4 347 68.6
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.7e-142 510.0 336 71.1
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 3.9e-142 508.8 336 70.5
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 6.6e-142 508.1 336 69.6
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 8.6e-142 507.7 336 69.0
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 2.5e-141 506.1 347 66.6
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 5.6e-141 505.0 336 69.0
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 7.3e-141 504.6 336 69.3
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 1.2e-140 503.8 336 69.0
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 1.6e-140 503.4 336 69.3
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 2.1e-140 503.1 336 68.8
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 2.1e-140 503.1 334 70.4
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 2.8e-140 502.7 335 67.2
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 3.6e-140 502.3 336 68.8
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 4.7e-140 501.9 340 67.1
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 4.7e-140 501.9 348 66.7
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 4.7e-140 501.9 335 67.2
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 3.1e-139 499.2 337 65.9
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 4.0e-139 498.8 338 68.9
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 5.2e-139 498.4 336 67.0
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 6.9e-139 498.0 331 69.2
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 9.0e-139 497.7 338 65.4
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 1.2e-138 497.3 336 67.3
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.2e-138 497.3 346 67.6
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 1.2e-138 497.3 336 67.3
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 1.5e-138 496.9 333 68.5
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 2.0e-138 496.5 337 65.3
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 2.0e-138 496.5 336 67.3
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 2.6e-138 496.1 334 69.8
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 3.4e-138 495.7 346 63.9
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 3.4e-138 495.7 347 67.4
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 3.4e-138 495.7 342 64.6
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 4.4e-138 495.4 337 65.0
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 5.8e-138 495.0 338 64.8
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 5.8e-138 495.0 338 64.8
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 9.9e-138 494.2 336 67.0
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 1.3e-137 493.8 337 65.6
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.3e-137 493.8 336 68.8
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 2.2e-137 493.0 337 65.9
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 2.9e-137 492.7 347 66.9
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 4.9e-137 491.9 338 64.8
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 4.9e-137 491.9 336 66.4
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 4.9e-137 491.9 326 68.1
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 4.9e-137 491.9 335 64.8
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 6.4e-137 491.5 347 66.9
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 8.4e-137 491.1 347 66.9
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 8.4e-137 491.1 347 63.7
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 8.4e-137 491.1 337 66.5
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 1.1e-136 490.7 336 67.3
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 1.1e-136 490.7 336 65.8
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 3.2e-136 489.2 337 65.9
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 3.2e-136 489.2 333 65.5
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 3.2e-136 489.2 357 63.3
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 4.2e-136 488.8 369 61.5
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 7.1e-136 488.0 347 66.6
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 9.3e-136 487.6 336 65.5
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 1.2e-135 487.3 336 66.4
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 1.2e-135 487.3 335 64.2
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 1.6e-135 486.9 324 68.5
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 2.7e-135 486.1 335 67.5
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 3.5e-135 485.7 338 64.8
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 3.5e-135 485.7 336 65.5
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 1.7e-134 483.4 338 63.9
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 5.1e-134 481.9 335 66.3
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 6.6e-134 481.5 336 64.6
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.7e-134 481.1 335 64.5
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 8.7e-134 481.1 336 65.5
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 1.1e-133 480.7 338 63.3
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 1.5e-133 480.3 351 63.0
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 2.5e-133 479.6 345 64.1
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 4.3e-133 478.8 336 65.8
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 5.6e-133 478.4 333 64.3
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 7.3e-133 478.0 380 60.5
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 9.6e-133 477.6 339 64.9
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 1.3e-132 477.2 337 62.9
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 1.6e-132 476.9 336 65.8
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 6.2e-132 474.9 339 62.8
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 8.1e-132 474.6 345 62.0
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 9.0e-131 471.1 343 62.1
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 9.0e-131 471.1 343 62.1
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 9.0e-131 471.1 337 64.4
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 4.5e-130 468.8 346 63.0
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 5.8e-130 468.4 365 61.1
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 3.8e-129 465.7 338 65.1
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 3.2e-128 462.6 345 62.3
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 4.2e-128 462.2 345 62.3
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 5.4e-128 461.8 335 63.3
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 7.9e-127 458.0 295 67.1
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 9.6e-125 451.1 351 61.8
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.7e-121 440.3 332 63.6
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 4.9e-121 438.7 340 60.9
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.4e-120 437.2 346 59.5
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.6e-119 433.7 348 58.9
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 4.6e-119 432.2 365 56.7
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 6.7e-118 428.3 302 64.2
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.5e-117 426.4 297 65.0
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 6.2e-116 421.8 337 58.5
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 6.5e-113 411.8 295 63.4
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 4.1e-107 392.5 350 55.4
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-103 380.9 324 57.1
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 2.7e-103 379.8 342 55.6
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.7e-102 375.2 335 54.6
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 2.5e-101 373.2 407 47.9
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 8.2e-100 368.2 293 60.4
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.1e-99 366.3 243 67.1
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 3.1e-99 366.3 281 58.0
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 2.2e-97 360.1 272 63.2
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.2e-97 360.1 322 53.7
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 1.1e-96 357.8 278 60.1
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 3.6e-95 352.8 278 59.7
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.5e-93 347.4 319 54.2
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 1.3e-92 344.4 244 66.8
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 3.1e-91 339.7 282 56.7
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 1.9e-88 330.5 250 62.4
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 1.2e-87 327.8 198 74.7
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.6e-87 327.4 197 76.1
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.6e-87 326.2 329 50.5
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 2.3e-86 323.6 243 62.6
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 5.7e-85 318.9 325 48.9
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-72 278.1 303 50.8
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-72 277.7 200 64.0
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.1e-71 273.9 200 61.0
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-69 268.1 198 60.6
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 7.5e-69 265.4 401 39.2
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 1.7e-68 264.2 166 68.7
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.3e-68 262.3 242 52.9
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 3.1e-67 260.0 294 42.5
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 7.2e-64 248.8 189 59.3
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 8.6e-57 225.3 158 66.5
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 2.0e-50 204.1 179 55.3
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-49 201.1 144 61.8
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-49 201.1 144 61.8
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-49 201.1 144 61.8
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.0e-49 199.5 193 52.3
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-48 197.6 144 61.1
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.9e-44 183.7 154 58.4
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.1e-39 165.6 95 71.6
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 2.9e-36 157.1 115 62.6
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 5.4e-35 152.9 85 76.5
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-33 147.5 177 44.6
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 3.0e-33 147.1 108 61.1
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 5.8e-29 132.9 99 58.6
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 4.3e-24 116.7 76 65.8
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-19 102.1 66 68.2
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.3e-19 99.0 74 59.5
SEGI_28029 Sequoiadendron giganteum HOM05D000141 ORTHO05D004489 1.7e-17 94.7 66 63.6
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 9.9e-13 79.0 107 41.1
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.6e-10 71.6 41 75.6
SEGI_13886 Sequoiadendron giganteum HOM05D000121 ORTHO05D001726 2.1e-10 71.2 59 61.0
SEGI_17992 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 2.7e-10 70.9 67 49.3
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.5e-10 70.5 66 51.5
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 4.6e-10 70.1 47 66.0
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 1.8e-09 68.2 36 86.1
SEGI_27982 Sequoiadendron giganteum HOM05D015006 ORTHO05D015881 8.7e-09 65.9 113 37.2
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 1.5e-08 65.1 239 27.6
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 4.0e-06 57.0 64 42.2


User provided reference genes

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