Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 0.0e+00 1304.3 655 100.0
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.6e-193 679.5 345 99.7
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 2.2e-107 394.0 651 37.8
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 2.9e-91 340.5 615 35.8
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 3.0e-88 330.5 615 34.1
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.5e-87 328.2 621 36.1
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.9e-87 327.8 616 35.7
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 5.6e-87 326.2 612 34.3
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.8e-86 323.9 617 34.8
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.6e-86 323.6 615 36.4
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 4.7e-86 323.2 616 34.1
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.2e-84 318.5 617 34.8
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 4.4e-84 316.6 617 34.4
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 9.8e-84 315.5 612 34.2
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 8.3e-83 312.4 614 34.2
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 1.2e-81 308.5 640 33.0
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 4.6e-81 306.6 620 33.7
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 6.0e-81 306.2 619 33.4
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.7e-80 304.7 615 34.3
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 3.9e-80 303.5 620 33.2
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 3.9e-80 303.5 618 34.8
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 5.1e-80 303.1 613 34.4
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 5.1e-80 303.1 614 33.6
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 6.6e-80 302.8 612 31.2
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 1.1e-79 302.0 614 33.4
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 1.1e-79 302.0 612 32.2
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.1e-79 302.0 618 33.2
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.9e-79 301.2 618 32.8
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 9.5e-79 298.9 616 34.6
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 1.2e-78 298.5 614 31.8
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 2.1e-78 297.7 611 32.4
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 3.6e-78 297.0 616 33.1
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 6.2e-78 296.2 608 34.0
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 6.2e-78 296.2 622 33.0
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 8.1e-78 295.8 621 32.7
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 8.1e-78 295.8 626 33.2
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 8.1e-78 295.8 617 33.5
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.1e-77 295.4 612 31.9
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.4e-77 295.0 619 33.8
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.8e-77 294.7 613 34.3
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.8e-77 294.7 614 32.7
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 5.2e-77 293.1 613 32.6
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 8.9e-77 292.4 612 32.5
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.2e-76 292.0 619 33.6
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 2.6e-76 290.8 609 32.7
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 4.4e-76 290.0 617 34.0
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 4.4e-76 290.0 609 32.3
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 5.8e-76 289.7 620 32.6
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 5.8e-76 289.7 611 32.9
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 2.9e-75 287.3 512 37.3
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 8.4e-75 285.8 643 30.8
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 1.4e-74 285.0 613 33.4
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 9.2e-74 282.3 625 33.4
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 9.2e-74 282.3 615 31.5
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 2.1e-73 281.2 623 32.7
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.7e-73 280.8 619 32.6
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 2.7e-73 280.8 617 33.5
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 2.7e-73 280.8 620 32.3
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 1.7e-72 278.1 619 30.7
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 2.3e-72 277.7 624 33.2
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 2.3e-72 277.7 613 32.0
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 3.9e-72 276.9 621 32.5
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 5.1e-72 276.6 612 32.0
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 6.6e-72 276.2 618 32.2
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 8.6e-72 275.8 519 34.9
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.1e-71 275.4 615 30.7
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.5e-71 275.0 620 31.6
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 2.5e-71 274.2 610 31.3
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 3.3e-71 273.9 612 31.4
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 3.3e-71 273.9 619 31.5
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 9.6e-71 272.3 627 30.8
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 1.2e-70 271.9 617 30.5
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 8.1e-70 269.2 616 30.4
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.1e-69 268.9 618 32.5
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 1.4e-69 268.5 615 31.4
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 2.4e-69 267.7 616 30.5
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 3.1e-69 267.3 622 31.5
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.0e-69 266.9 608 30.9
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.0e-69 266.9 615 31.1
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.9e-69 265.8 608 30.8
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.2e-68 265.4 622 31.4
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 2.6e-68 264.2 611 29.8
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 5.8e-68 263.1 615 30.1
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-67 261.9 612 30.1
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.3e-67 261.9 488 35.2
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.4e-66 258.5 615 30.6
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 4.2e-66 256.9 645 29.1
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 7.1e-66 256.1 623 30.7
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 9.3e-66 255.8 614 30.6
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 3.5e-65 253.8 638 30.4
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 4.6e-65 253.4 608 29.4
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 3.0e-64 250.8 620 31.3
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 5.1e-64 250.0 512 32.6
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 9.6e-63 245.7 619 29.7
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 2.8e-62 244.2 631 30.0
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 4.9e-59 233.4 464 33.0
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 2.4e-58 231.1 612 29.2
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 3.9e-56 223.8 613 29.2
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 1.5e-55 221.9 490 31.6
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.9e-55 221.5 453 32.5
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 3.3e-55 220.7 613 28.5
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 2.1e-54 218.0 313 36.7
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.1e-54 218.0 630 29.7
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 9.0e-53 212.6 611 28.5
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 9.0e-53 212.6 611 28.5
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 9.0e-53 212.6 611 28.5
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 1.5e-52 211.8 485 31.8
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 2.6e-52 211.1 477 31.0
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 4.9e-51 206.8 612 27.9
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 4.9e-51 206.8 235 44.7
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 2.4e-50 204.5 637 27.6
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 9.6e-47 192.6 298 35.2
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 2.1e-46 191.4 613 25.1
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 6.5e-43 179.9 300 34.3
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-42 179.1 241 40.7
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 2.1e-41 174.9 393 29.8
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.3e-39 167.5 246 39.8
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.6e-38 165.2 610 26.9
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 2.7e-33 147.9 176 39.8
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 1.1e-29 136.0 382 28.3
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 2.0e-20 105.1 234 29.1
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 5.9e-20 103.6 180 35.6
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 5.2e-16 90.5 216 27.3
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 6.3e-14 83.6 364 25.8
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 1.1e-13 82.8 215 30.7
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 3.8e-11 74.3 68 51.5
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.5e-10 72.4 100 42.0
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 3.2e-10 71.2 212 27.4
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.6e-09 68.9 69 42.0
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 2.1e-09 68.6 137 36.5
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 6.1e-09 67.0 87 41.4
QL01p004134 Quercus lobata HOM05D001573 ORTHO05D001660 2.6e-07 61.6 306 23.9
Carub.0002s1026 Capsella rubella HOM05D002702 ORTHO05D003416 9.7e-07 59.7 282 22.3
AL4G39730 Arabidopsis lyrata HOM05D001573 ORTHO05D001660 2.8e-06 58.2 309 22.3
CARHR136720 Cardamine hirsuta HOM05D001573 ORTHO05D001660 3.7e-06 57.8 309 22.0
AagrBONN_evm.TU.Sc2ySwM_228.5644 Anthoceros agrestis HOM05D002702 ORTHO05D003416 4.8e-06 57.4 281 22.4
Zm00001eb103570 Zea mays HOM05D001573 ORTHO05D001660 4.8e-06 57.4 302 23.8
ATR0782G235 Amborella trichopoda HOM05D001573 ORTHO05D001660 6.3e-06 57.0 302 22.2
AT2G41630 Arabidopsis thaliana HOM05D001573 ORTHO05D001660 6.3e-06 57.0 309 22.3
Carub.0004s2388 Capsella rubella HOM05D001573 ORTHO05D001660 6.3e-06 57.0 309 22.3
PGR083G2767 Punica granatum HOM05D001573 ORTHO05D001660 8.2e-06 56.6 305 22.3


User provided reference genes

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