Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16466 Sequoiadendron giganteum HOM05D002708 ORTHO05D037597 0.0e+00 1360.5 681 100.0
SEGI_19348 Sequoiadendron giganteum HOM05D002708 ORTHO05D037597 8.4e-179 631.3 551 63.3
SEGI_37537 Sequoiadendron giganteum HOM05D002708 ORTHO05D037597 5.1e-51 206.8 101 92.1
SEGI_27626 Sequoiadendron giganteum HOM05D000250 ORTHO05D385069 3.3e-50 204.1 172 68.0
SEGI_07288 Sequoiadendron giganteum HOM05D002752 ORTHO05D000007 1.1e-45 189.1 125 77.6
SEGI_02227 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.8e-24 118.6 101 57.4
SEGI_28578 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 2.7e-23 114.8 59 86.4
SEGI_30950 Sequoiadendron giganteum HOM05D023998 ORTHO05D005353 2.5e-21 108.2 72 75.0
SEGI_06790 Sequoiadendron giganteum HOM05D001392 ORTHO05D003370 1.8e-19 102.1 98 57.1
AagrBONN_evm.TU.Sc2ySwM_117.472 Anthoceros agrestis HOM05D002708 ORTHO05D003516 2.2e-17 95.1 81 54.3
ATR0794G148 Amborella trichopoda HOM05D002708 ORTHO05D003516 2.8e-17 94.7 82 48.8
SEGI_17798 Sequoiadendron giganteum HOM05D023998 ORTHO05D383864 2.8e-17 94.7 88 63.6
Mapoly0108s0028 Marchantia polymorpha HOM05D002708 ORTHO05D003516 3.7e-17 94.4 93 54.8
QL02p018118 Quercus lobata HOM05D002708 ORTHO05D003516 4.8e-17 94.0 90 46.7
Pp3c11_25960 Physcomitrium patens HOM05D002708 ORTHO05D003516 1.8e-16 92.0 93 50.5
Lsat_1_v5_gn_1_83221 Lactuca sativa HOM05D002708 ORTHO05D003516 3.1e-16 91.3 116 44.8
ECA248G0935 Erigeron canadensis HOM05D002708 ORTHO05D003516 4.1e-16 90.9 116 44.8
ECA248G3827 Erigeron canadensis HOM05D002708 ORTHO05D003516 7.0e-16 90.1 116 44.8
Gohir.A12G046100 Gossypium hirsutum HOM05D002708 ORTHO05D003516 7.0e-16 90.1 59 64.4
Gohir.D12G045200 Gossypium hirsutum HOM05D002708 ORTHO05D003516 7.0e-16 90.1 59 64.4
Gorai.008G047600 Gossypium raimondii HOM05D002708 ORTHO05D003516 7.0e-16 90.1 59 64.4
Atru.chr7.2587 Acer truncatum HOM05D002708 ORTHO05D003516 9.1e-16 89.7 59 64.4
FAN05G3540 Fragaria x ananassa HOM05D002708 ORTHO05D003516 9.1e-16 89.7 81 50.6
HanXRQChr11g0352181 Helianthus annuus HOM05D002708 ORTHO05D003516 9.1e-16 89.7 116 43.1
FAN02G3944 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.2e-15 89.4 81 50.6
FAN09G1379 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.2e-15 89.4 81 50.6
ATR0693G135 Amborella trichopoda HOM05D002708 ORTHO05D003516 1.6e-15 89.0 90 44.4
AUR62004771 Chenopodium quinoa HOM05D002708 ORTHO05D003516 1.6e-15 89.0 59 61.0
AUR62037481 Chenopodium quinoa HOM05D002708 ORTHO05D003516 1.6e-15 89.0 59 61.0
HanXRQChr11g0341881 Helianthus annuus HOM05D002708 ORTHO05D003516 1.6e-15 89.0 116 42.2
Pp3c7_370 Physcomitrium patens HOM05D002708 ORTHO05D003516 1.6e-15 89.0 93 49.5
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 2.0e-15 88.6 59 62.7
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 2.0e-15 88.6 59 62.7
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 2.0e-15 88.6 59 62.7
Ciclev10007609m.g Citrus clementina HOM05D002708 ORTHO05D003516 2.7e-15 88.2 59 62.7
Gohir.A03G216900 Gossypium hirsutum HOM05D002708 ORTHO05D003516 2.7e-15 88.2 59 62.7
Gohir.D02G238500 Gossypium hirsutum HOM05D002708 ORTHO05D003516 2.7e-15 88.2 59 62.7
Gorai.005G267000 Gossypium raimondii HOM05D002708 ORTHO05D003516 2.7e-15 88.2 59 62.7
Thecc.02G010700 Theobroma cacao HOM05D002708 ORTHO05D003516 2.7e-15 88.2 59 62.7
TAR375G0649 Trochodendron aralioides HOM05D002708 ORTHO05D016265 2.7e-15 88.2 59 61.0
GSVIVG01036012001 Vitis vinifera HOM05D002708 ORTHO05D003516 2.7e-15 88.2 59 61.0
MD12G1258100 Malus domestica HOM05D002708 ORTHO05D003516 3.5e-15 87.8 59 59.3
Hund22205 Selenicereus undatus HOM05D002708 ORTHO05D003516 3.5e-15 87.8 59 62.7
Atru.chr3.3419 Acer truncatum HOM05D002708 ORTHO05D003516 4.5e-15 87.4 59 62.7
EL10Ac4g08928 Beta vulgaris HOM05D002708 ORTHO05D003516 4.5e-15 87.4 59 61.0
Lalb_Chr08g0244681 Lupinus albus HOM05D002708 ORTHO05D003516 4.5e-15 87.4 59 59.3
Oeu002888.1 Olea europaea HOM05D002708 ORTHO05D003516 4.5e-15 87.4 59 62.7
RcHm_v2.0_Chr3g0448281 Rosa chinensis HOM05D002708 ORTHO05D003516 4.5e-15 87.4 109 39.4
FvH4_6g00800 Fragaria vesca HOM05D002708 ORTHO05D003516 5.9e-15 87.0 81 49.4
FAN14G3709 Fragaria x ananassa HOM05D002708 ORTHO05D003516 5.9e-15 87.0 81 49.4
CBR_g32387 Chara braunii HOM05D002708 ORTHO05D003516 7.7e-15 86.7 93 46.2
Sc20g0000810 Simmondsia chinensis HOM05D002708 ORTHO05D003516 7.7e-15 86.7 59 62.7
VMungo1309G2216 Vigna mungo HOM05D002708 ORTHO05D003516 7.7e-15 86.7 59 61.0
Oeu037396.1 Olea europaea HOM05D002708 ORTHO05D003516 1.0e-14 86.3 88 42.0
Os10g0569200 Oryza sativa ssp. japonica HOM05D002708 ORTHO05D003516 1.0e-14 86.3 59 61.0
QL08p065006 Quercus lobata HOM05D002708 ORTHO05D003516 1.0e-14 86.3 59 62.7
CSS0039264 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.3e-14 85.9 98 48.0
Lsat_1_v5_gn_7_11740 Lactuca sativa HOM05D002708 ORTHO05D003516 1.7e-14 85.5 116 42.2
SGA_v2.0_scaffold85G26804 Striga asiatica HOM05D002708 ORTHO05D003516 1.7e-14 85.5 59 57.6
arahy.Tifrunner.gnm1.ann1.9YLT9A Arachis hypogaea HOM05D002708 ORTHO05D003516 2.3e-14 85.1 59 59.3
arahy.Tifrunner.gnm1.ann1.V30RJW Arachis hypogaea HOM05D002708 ORTHO05D003516 2.3e-14 85.1 59 59.3
MSTRG.20407 Avicennia marina HOM05D002708 ORTHO05D003516 2.3e-14 85.1 81 45.7
Cc00_g16980 Coffea canephora HOM05D002708 ORTHO05D003516 2.3e-14 85.1 59 61.0
COL.COLO4_17667 Corchorus olitorius HOM05D002708 ORTHO05D003516 2.3e-14 85.1 59 61.0
Migut.B01470 Erythranthe guttata HOM05D002708 ORTHO05D003516 2.3e-14 85.1 59 59.3
Hma1.2p1_0021F.1_g014376 Hydrangea macrophylla HOM05D002708 ORTHO05D003516 2.3e-14 85.1 59 61.0
Duzib052G0664 Durio zibethinus HOM05D002708 ORTHO05D003516 2.9e-14 84.7 59 61.0
MD04G1241100 Malus domestica HOM05D002708 ORTHO05D003516 2.9e-14 84.7 59 55.9
TPR.G21430 Trifolium pratense HOM05D002708 ORTHO05D003516 2.9e-14 84.7 78 47.4
Actinidia33292 Actinidia chinensis HOM05D002708 ORTHO05D003516 3.8e-14 84.3 59 57.6
CSS0024835 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 3.8e-14 84.3 149 35.6
Actinidia21606 Actinidia chinensis HOM05D002708 ORTHO05D003516 5.0e-14 84.0 59 55.9
Aqoxy7G03410 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 5.0e-14 84.0 59 57.6
CsaV3_7G024030 Cucumis sativus L. HOM05D002708 ORTHO05D003516 5.0e-14 84.0 59 57.6
Nitab4.5_0001476g0150 Nicotiana tabacum HOM05D002708 ORTHO05D003516 5.0e-14 84.0 59 59.3
Nitab4.5_0012432g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 5.0e-14 84.0 59 59.3
Peaxi162Scf01124g00013 Petunia axillaris HOM05D002708 ORTHO05D003516 5.0e-14 84.0 59 59.3
Eucgr.J02249 Eucalyptus grandis HOM05D002708 ORTHO05D003516 6.5e-14 83.6 59 57.6
Glyma.03G002400 Glycine max HOM05D002708 ORTHO05D003516 6.5e-14 83.6 59 57.6
Glyma.04G057632 Glycine max HOM05D002708 ORTHO05D003516 6.5e-14 83.6 59 57.6
Glyma.07G107700 Glycine max HOM05D002708 ORTHO05D003516 6.5e-14 83.6 59 57.6
HanXRQChr03g0088081 Helianthus annuus HOM05D002708 ORTHO05D003516 6.5e-14 83.6 100 43.0
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 6.5e-14 83.6 59 59.3
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 6.5e-14 83.6 93 47.3
Phvul.009G084100 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 6.5e-14 83.6 59 57.6
SalBow5G4312 Salvia bowleyana HOM05D002708 ORTHO05D003516 6.5e-14 83.6 59 57.6
Sed0015739 Sechium edule HOM05D002708 ORTHO05D003516 6.5e-14 83.6 81 49.4
ClCG09G010530 Citrullus lanatus HOM05D002708 ORTHO05D003516 8.6e-14 83.2 81 48.1
DCAR_029539 Daucus carota HOM05D002708 ORTHO05D003516 8.6e-14 83.2 56 62.5
Lj1g0003503 Lotus japonicus HOM05D002708 ORTHO05D003516 8.6e-14 83.2 59 57.6
Nn4g24628 Nelumbo nucifera HOM05D002708 ORTHO05D003516 8.6e-14 83.2 59 59.3
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 8.6e-14 83.2 59 57.6
Sp4g03800 Schrenkiella parvula HOM05D002708 ORTHO05D003516 8.6e-14 83.2 59 59.3
Solyc01g088370.3 Solanum lycopersicum HOM05D002708 ORTHO05D003516 8.6e-14 83.2 161 32.9
CSS0029201 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.1e-13 82.8 179 33.0
Lalb_Chr23g0268061 Lupinus albus HOM05D002708 ORTHO05D003516 1.1e-13 82.8 59 59.3
Medtr3g105430 Medicago truncatula HOM05D002708 ORTHO05D003516 1.1e-13 82.8 59 57.6
Prupe.6G358600 Prunus persica HOM05D002708 ORTHO05D003516 1.5e-13 82.4 59 55.9
Sopen01g035200 Solanum pennellii HOM05D002708 ORTHO05D003516 1.5e-13 82.4 161 32.9
BcaB06g28016 Brassica carinata HOM05D002708 ORTHO05D003516 2.5e-13 81.6 59 59.3
BcaC02g08409 Brassica carinata HOM05D002708 ORTHO05D003516 2.5e-13 81.6 59 59.3
BcaC07g40905 Brassica carinata HOM05D002708 ORTHO05D003516 2.5e-13 81.6 59 59.3
A04p19190 Brassica napus HOM05D002708 ORTHO05D003516 2.5e-13 81.6 59 59.3
A09p56110 Brassica napus HOM05D002708 ORTHO05D003516 2.5e-13 81.6 59 59.3
C08p39040 Brassica napus HOM05D002708 ORTHO05D003516 2.5e-13 81.6 59 59.3
BolC4t27001H Brassica oleracea HOM05D002708 ORTHO05D003516 2.5e-13 81.6 59 59.3
BolC8t51477H Brassica oleracea HOM05D002708 ORTHO05D003516 2.5e-13 81.6 59 59.3
BraA09t41006Z Brassica rapa HOM05D002708 ORTHO05D003516 2.5e-13 81.6 59 59.3
Potri.006G267500 Populus trichocarpa HOM05D002708 ORTHO05D003516 3.2e-13 81.3 93 46.2
Potri.018G015200 Populus trichocarpa HOM05D002708 ORTHO05D003516 3.2e-13 81.3 93 46.2
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 3.2e-13 81.3 93 45.2
CSS0041941 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 4.2e-13 80.9 59 55.9
Carub.0006s2495 Capsella rubella HOM05D002708 ORTHO05D003516 4.2e-13 80.9 59 57.6
Cfa002667 Carpinus fangiana HOM05D002708 ORTHO05D003516 4.2e-13 80.9 59 54.2
Cfa017363 Carpinus fangiana HOM05D002708 ORTHO05D003516 4.2e-13 80.9 59 54.2
Ca_15806_v3 Cicer arietinum L. HOM05D002708 ORTHO05D003516 4.2e-13 80.9 93 46.2
TWI63G0006 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 4.2e-13 80.9 59 54.2
C04p54590 Brassica napus HOM05D002708 ORTHO05D003516 5.5e-13 80.5 59 59.3
Cfa013020 Carpinus fangiana HOM05D002708 ORTHO05D003516 5.5e-13 80.5 59 55.9
AT5G27640 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 7.2e-13 80.1 59 55.9
CARHR294550 Cardamine hirsuta HOM05D002708 ORTHO05D003516 7.2e-13 80.1 59 55.9
MBI19_g28098_MAGBIO Magnolia biondii HOM05D002708 ORTHO05D003516 7.2e-13 80.1 59 57.6
Nn3g18494 Nelumbo nucifera HOM05D002708 ORTHO05D003516 7.2e-13 80.1 59 54.2
SMO270G0119 Selaginella moellendorffii HOM05D002708 ORTHO05D003516 7.2e-13 80.1 77 49.4
THA.LOC104803605 Tarenaya hassleriana HOM05D002708 ORTHO05D003516 7.2e-13 80.1 59 57.6
AL6G39390 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 9.5e-13 79.7 59 55.9
AT5G25780 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 9.5e-13 79.7 59 55.9
Phvul.009G084000 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 9.5e-13 79.7 59 55.9
Psat5g034880 Pisum sativum HOM05D002708 ORTHO05D003516 9.5e-13 79.7 59 55.9
Rhsim01G0145200 Rhododendron simsii HOM05D002708 ORTHO05D003516 9.5e-13 79.7 59 57.6
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.2e-12 79.3 59 55.9
CsaV3_7G021200 Cucumis sativus L. HOM05D002708 ORTHO05D003516 1.2e-12 79.3 81 46.9
Sabra18G0018700 Salix brachista HOM05D002708 ORTHO05D003516 1.2e-12 79.3 59 55.9
CANSAT25G3904 Cannabis sativa HOM05D002708 ORTHO05D003516 1.6e-12 79.0 59 59.3
Thhalv10000061m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 2.1e-12 78.6 59 54.2
Nitab4.5_0009957g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 2.1e-12 78.6 59 55.9
Zm00001eb024200 Zea mays HOM05D002708 ORTHO05D003516 2.1e-12 78.6 59 57.6
EL10Ac5g11414 Beta vulgaris HOM05D002708 ORTHO05D003516 2.8e-12 78.2 55 56.4
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 2.8e-12 78.2 59 54.2
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 3.6e-12 77.8 59 54.2
CAN.G1480.4 Capsicum annuum HOM05D002708 ORTHO05D003516 3.6e-12 77.8 59 52.5
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 4.7e-12 77.4 59 54.2
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 4.7e-12 77.4 59 54.2
Dinv44002 Davidia involucrata HOM05D002708 ORTHO05D003516 4.7e-12 77.4 59 55.9
vmacro21095 Vaccinium macrocarpon HOM05D002708 ORTHO05D003516 4.7e-12 77.4 59 55.9
BraA04t17520Z Brassica rapa HOM05D002708 ORTHO05D003516 6.1e-12 77.0 56 58.9
PGSC0003DMG400001674 Solanum tuberosum HOM05D002708 ORTHO05D003516 8.0e-12 76.6 59 54.2
TWI32G0606 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 1.8e-11 75.5 59 52.5
CiPaw.08G004600 Carya illinoinensis HOM05D002708 ORTHO05D003516 2.3e-11 75.1 59 52.5
HPP92_028477 Vanilla planifolia HOM05D002708 ORTHO05D003516 8.9e-11 73.2 59 50.8
Thhalv10027018m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 1.2e-10 72.8 100 39.0
SEGI_39479 Sequoiadendron giganteum HOM05D000109 ORTHO05D000001 7.5e-10 70.1 67 58.2
unitig_0.g1326 Utricularia gibba HOM05D002708 ORTHO05D003516 9.8e-10 69.7 51 54.9
COL.COLO4_30887 Corchorus olitorius HOM05D002708 ORTHO05D003516 2.8e-09 68.2 59 49.2
TPR.G27979 Trifolium pratense HOM05D002708 ORTHO05D003516 6.3e-09 67.0 79 40.5
SEGI_25060 Sequoiadendron giganteum HOM05D001965 ORTHO05D002112 8.3e-09 66.6 40 80.0
Aa31LG2G18580 Aethionema arabicum HOM05D002708 ORTHO05D003516 1.1e-08 66.2 56 50.0
SEGI_26246 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.8e-08 65.5 33 81.8
SEGI_25245 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 7.0e-08 63.5 66 50.0
ClCG09G010490 Citrullus lanatus HOM05D002708 ORTHO05D003516 9.2e-08 63.2 44 56.8
MCO03G077 Micromonas commoda HOM05D002708 ORTHO05D003516 2.7e-07 61.6 58 48.3
SEGI_30219 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.7e-07 61.6 66 45.5
SEGI_03561 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.0e-06 59.7 67 49.3
SEGI_09371 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.0e-06 59.7 66 45.5
SEGI_07683 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.3e-06 59.3 66 47.0
PRCOL_00000791 Prasinoderma coloniale HOM05D002708 ORTHO05D003516 1.7e-06 58.9 182 26.4
Cpa.g.sc17.146 Carica papaya HOM05D002708 ORTHO05D003516 3.8e-06 57.8 35 65.7
SEGI_04823 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 6.6e-06 57.0 66 43.9
SEGI_25269 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 8.6e-06 56.6 91 39.6


User provided reference genes

Program Settings