Gene: AT5G27640

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G27640
  • Transcript Identifier AT5G27640.1
  • Gene Type Coding gene
  • Location Chr5 : 9781207-9784759 : negative

Gene Family Information

  • ID HOM05D002708
  • #Genes/#Species 254/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G27640.1
  • symbol TIF3B1
  • Alias ATEIF3B-1,ATTIF3B1,ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1,EIF3B-1,EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1,EIF3B,EUKARYOTIC TRANSLATION INITIATION FACTOR 3B
  • uniprot Q9C5Z1

Descriptions

  • Description translation initiation factor 3B1
  • Computational description translation initiation factor 3B1 (TIF3B1); FUNCTIONS IN: nucleic acid binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytosol, eukaryotic translation initiation factor 3 complex, nucleus; EXPRESSED IN: guard cell, cultured cell, seed; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Translation initiation factor eIF-3b (InterPro:IPR011400); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3B-2 (TAIR:AT5G25780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006413
IEA
GOA Databasetranslational initiation
GO:0006413
IBA
Gene Ontologytranslational initiation1
GO:0006413
IEA
InterProtranslational initiation
GO:0006412
IEA
GOA Databasetranslation
GO:0002183
IEA
GOA Databasecytoplasmic translational initiation
GO:0001732
IEA
GOA Databaseformation of cytoplasmic translation initiation complex

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031369
IEA
Gene Ontologytranslation initiation factor binding
GO:0031369
IEA
InterProtranslation initiation factor binding
GO:0003743
IEA
GOA Databasetranslation initiation factor activity
GO:0003743
ISS, IBA
TAS
Gene Ontologytranslation initiation factor activity1 2
GO:0003743
IEA
InterProtranslation initiation factor activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0005515
IEA
InterProprotein binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005852
IEA
GOA Databaseeukaryotic translation initiation factor 3 complex
GO:0005852
ISS, IBA
Gene Ontologyeukaryotic translation initiation factor 3 complex1 2
GO:0005852
IEA
InterProeukaryotic translation initiation factor 3 complex
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0016282
IEA
GOA Databaseeukaryotic 43S preinitiation complex
GO:0033290
IEA
GOA Databaseeukaryotic 48S preinitiation complex
GO:0009536
HDA
Gene Ontologyplastid4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013979 Translation initiation factor, beta propellor-like domain
IPR034363 eIF3B, RNA recognition motif
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR011400 Eukaryotic translation initiation factor 3 subunit B
IPR000504 RNA recognition motif domain
Mapman id Description
17.4.1.3.2 Protein biosynthesis.translation initiation.Pre-Initiation Complex (PIC) module.eIF3 mRNA-to-PIC binding complex.component eIF3b