Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15638 Sequoiadendron giganteum HOM05D017817 ORTHO05D019625 0.0e+00 1137.9 581 100.0
Mapoly0076s0085 Marchantia polymorpha HOM05D017817 ORTHO05D019625 2.2e-95 354.0 525 40.6
SMO115G0190 Selaginella moellendorffii HOM05D017817 ORTHO05D019625 2.8e-90 337.0 489 42.1
AagrBONN_evm.TU.Sc2ySwM_117.73 Anthoceros agrestis HOM05D017817 ORTHO05D019625 6.2e-90 335.9 342 50.6
Pp3c11_21780 Physcomitrium patens HOM05D017817 ORTHO05D019625 2.5e-86 323.9 609 36.6
Pp3c7_4080 Physcomitrium patens HOM05D017817 ORTHO05D019625 7.9e-85 318.9 492 39.4
CBR_g5724 Chara braunii HOM05D017817 ORTHO05D019625 1.0e-60 238.8 323 38.7
BcaC01g02856 Brassica carinata HOM05D000218 ORTHO05D000125 6.8e-12 76.6 187 29.9
HanXRQChr01g0026121 Helianthus annuus HOM05D000218 ORTHO05D000125 6.8e-12 76.6 226 27.0
CDE02G4315 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 8.9e-12 76.3 242 26.4
CDE04G1141 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 8.9e-12 76.3 242 26.4
MD11G1226300 Malus domestica HOM05D000218 ORTHO05D000125 8.9e-12 76.3 271 25.1
Sopen10g002430 Solanum pennellii HOM05D000218 ORTHO05D000125 8.9e-12 76.3 231 26.8
Gohir.D05G365200 Gossypium hirsutum HOM05D000218 ORTHO05D000125 1.5e-11 75.5 231 26.8
Mapoly0094s0010 Marchantia polymorpha HOM05D000218 ORTHO05D000125 1.5e-11 75.5 249 25.7
BcaB08g34671 Brassica carinata HOM05D000218 ORTHO05D000125 2.0e-11 75.1 194 30.4
ECA248G2397 Erigeron canadensis HOM05D000218 ORTHO05D000125 2.0e-11 75.1 241 26.1
QL03p029548 Quercus lobata HOM05D000218 ORTHO05D000125 2.0e-11 75.1 231 26.8
QL08p013128 Quercus lobata HOM05D000218 ORTHO05D000125 2.0e-11 75.1 231 26.8
SEGI_03835 Sequoiadendron giganteum HOM05D000218 ORTHO05D000125 2.0e-11 75.1 231 26.8
SEGI_30490 Sequoiadendron giganteum HOM05D000218 ORTHO05D000125 2.0e-11 75.1 231 26.8
Gohir.A04G021600 Gossypium hirsutum HOM05D000218 ORTHO05D000125 2.6e-11 74.7 231 26.4
AagrBONN_evm.TU.Sc2ySwM_344.5186 Anthoceros agrestis HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.4
A01p36110 Brassica napus HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.8
CAN.G363.36 Capsicum annuum HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.4
CAN.G888.1 Capsicum annuum HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.4
Dinv35738 Davidia involucrata HOM05D000218 ORTHO05D000125 3.4e-11 74.3 253 24.9
Duzib128G1805 Durio zibethinus HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.4
Gohir.A01G075100 Gossypium hirsutum HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.4
Gohir.A04G021360 Gossypium hirsutum HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.8
Gohir.D01G062400 Gossypium hirsutum HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.8
Gohir.D05G365300 Gossypium hirsutum HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.8
Mapoly0080s0026 Marchantia polymorpha HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.8
Oeu035462.1 Olea europaea HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.8
PSO541G2994 Papaver somniferum HOM05D000218 ORTHO05D000125 3.4e-11 74.3 240 26.2
PGR102G1951 Punica granatum HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.4
Solyc07g064130.2 Solanum lycopersicum HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.4
PGSC0003DMG400014430 Solanum tuberosum HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.8
TWI39G1200 Tripterygium wilfordii HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.8
TWI74G0725 Tripterygium wilfordii HOM05D000218 ORTHO05D000125 3.4e-11 74.3 231 26.4
TPR.G27490 Trifolium pratense HOM05D000218 ORTHO05D000125 4.4e-11 73.9 231 25.1
GSVIVG01023471001 Vitis vinifera HOM05D000218 ORTHO05D000125 4.4e-11 73.9 231 26.4
EL10Ac1g00298 Beta vulgaris HOM05D000218 ORTHO05D000125 5.8e-11 73.6 231 26.4
BcaB06g25909 Brassica carinata HOM05D000218 ORTHO05D000125 5.8e-11 73.6 262 24.4
CSS0035324 Camellia sinensis var. sinensis HOM05D000218 ORTHO05D000125 5.8e-11 73.6 262 24.4
Lj4g0010201 Lotus japonicus HOM05D000218 ORTHO05D000125 5.8e-11 73.6 262 24.4
MSTRG.14419 Avicennia marina HOM05D000218 ORTHO05D000125 1.3e-10 72.4 231 26.4
Mapoly0034s0121 Marchantia polymorpha HOM05D000218 ORTHO05D000125 1.3e-10 72.4 231 26.4
Zm00001eb092550 Zea mays HOM05D000218 ORTHO05D000125 1.7e-10 72.0 192 27.1
HanXRQChr11g0340271 Helianthus annuus HOM05D000218 ORTHO05D000125 2.2e-10 71.6 231 27.3
Carub.0007s3174 Capsella rubella HOM05D000218 ORTHO05D000125 2.9e-10 71.2 235 25.1
CDE12G0931 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 4.9e-10 70.5 192 28.6
Prupe.2G185300 Prunus persica HOM05D000218 ORTHO05D000125 4.9e-10 70.5 231 26.0
Aqoxy4G00644 Aquilegia oxysepala HOM05D000218 ORTHO05D000125 6.4e-10 70.1 231 26.0
Atru.chr2.3220 Acer truncatum HOM05D000218 ORTHO05D000125 1.4e-09 68.9 234 26.1
Cpa.g.sc97.61 Carica papaya HOM05D000218 ORTHO05D000125 1.4e-09 68.9 189 28.6
Atru.chr2.3221 Acer truncatum HOM05D000218 ORTHO05D000125 3.2e-09 67.8 190 27.4
HanXRQChr01g0026881 Helianthus annuus HOM05D000218 ORTHO05D000125 4.1e-09 67.4 223 26.0
HanXRQChr01g0025881 Helianthus annuus HOM05D000218 ORTHO05D000125 5.4e-09 67.0 187 26.7
Gorai.002G147600 Gossypium raimondii HOM05D000218 ORTHO05D000125 1.2e-08 65.9 193 26.9
BcaC01g02906 Brassica carinata HOM05D000218 ORTHO05D000125 1.6e-08 65.5 212 26.4
TPR.G25344 Trifolium pratense HOM05D000218 ORTHO05D000125 1.6e-08 65.5 187 27.8
HanXRQChr01g0025891 Helianthus annuus HOM05D000218 ORTHO05D000125 2.7e-08 64.7 220 25.5
HanXRQChr01g0025971 Helianthus annuus HOM05D000218 ORTHO05D000125 3.5e-08 64.3 193 25.9
PSO832G4377 Papaver somniferum HOM05D000218 ORTHO05D000125 3.5e-08 64.3 164 28.7
HanXRQChr01g0025851 Helianthus annuus HOM05D000218 ORTHO05D000125 4.6e-08 63.9 252 23.8
AT1G55060 Arabidopsis thaliana HOM05D000218 ORTHO05D000125 6.0e-08 63.5 155 27.1
HanXRQChr01g0026871 Helianthus annuus HOM05D000218 ORTHO05D000125 6.0e-08 63.5 226 27.4
QL07p044818 Quercus lobata HOM05D000218 ORTHO05D000125 6.0e-08 63.5 155 28.4
Oeu013728.1 Olea europaea HOM05D000218 ORTHO05D000125 7.8e-08 63.2 155 27.7
PSO541G4686 Papaver somniferum HOM05D000218 ORTHO05D000125 7.8e-08 63.2 164 27.4
AagrBONN_evm.TU.Sc2ySwM_344.4429 Anthoceros agrestis HOM05D000218 ORTHO05D000125 1.0e-07 62.8 155 28.4
MSTRG.5731 Avicennia marina HOM05D000218 ORTHO05D000125 1.0e-07 62.8 155 28.4
BcaB07g33588 Brassica carinata HOM05D000218 ORTHO05D000125 1.0e-07 62.8 155 27.7
BcaC07g40881 Brassica carinata HOM05D000218 ORTHO05D000125 1.0e-07 62.8 157 25.5
CSS0017718 Camellia sinensis var. sinensis HOM05D000218 ORTHO05D000125 1.0e-07 62.8 155 27.1
Cpa.g.c27582.1 Carica papaya HOM05D000218 ORTHO05D000125 1.0e-07 62.8 155 28.4
AUR62004467 Chenopodium quinoa HOM05D000319 ORTHO05D000125 1.0e-07 62.8 155 27.7
COL.COLO4_09577 Corchorus olitorius HOM05D000218 ORTHO05D000125 1.0e-07 62.8 155 28.4
Lj3g0012238 Lotus japonicus HOM05D000218 ORTHO05D000125 1.0e-07 62.8 155 27.7
RcHm_v2.0_Chr7g0210981 Rosa chinensis HOM05D000218 ORTHO05D000125 1.0e-07 62.8 155 28.4
SEGI_09573 Sequoiadendron giganteum HOM05D000218 ORTHO05D000125 1.0e-07 62.8 155 28.4
SEGI_11630 Sequoiadendron giganteum HOM05D000218 ORTHO05D000125 1.0e-07 62.8 155 28.4
AL6G12540 Arabidopsis lyrata HOM05D000218 ORTHO05D000125 1.3e-07 62.4 155 27.7
AL6G35910 Arabidopsis lyrata HOM05D000218 ORTHO05D000125 1.3e-07 62.4 155 27.7
CSS0027475 Camellia sinensis var. sinensis HOM05D000218 ORTHO05D000125 1.3e-07 62.4 155 27.1
RcHm_v2.0_Chr4g0394241 Rosa chinensis HOM05D000218 ORTHO05D000125 1.3e-07 62.4 187 25.7
CSS0036315 Camellia sinensis var. sinensis HOM05D000218 ORTHO05D000125 1.7e-07 62.0 154 27.9
CARHR252230 Cardamine hirsuta HOM05D000218 ORTHO05D000125 1.7e-07 62.0 155 27.7
Ciclev10012290m.g Citrus clementina HOM05D000218 ORTHO05D000125 1.7e-07 62.0 155 27.7
Cc08_g05690 Coffea canephora HOM05D000218 ORTHO05D000125 1.7e-07 62.0 155 27.1
HanXRQChr15g0468481 Helianthus annuus HOM05D000218 ORTHO05D000125 1.7e-07 62.0 184 23.9
Mapoly0080s0025 Marchantia polymorpha HOM05D000218 ORTHO05D000125 1.7e-07 62.0 155 27.7
PSO500G0250 Papaver somniferum HOM05D000218 ORTHO05D000125 1.7e-07 62.0 154 27.9
PSO541G6244 Papaver somniferum HOM05D000218 ORTHO05D000125 1.7e-07 62.0 155 27.7
Psat7g161800 Pisum sativum HOM05D000218 ORTHO05D000125 1.7e-07 62.0 155 28.4
SHI02163 Sapria himalayana HOM05D000218 ORTHO05D000125 1.7e-07 62.0 155 27.7
AL1G63060 Arabidopsis lyrata HOM05D000218 ORTHO05D000125 2.3e-07 61.6 155 26.5
Duzib093G0663 Durio zibethinus HOM05D000218 ORTHO05D000125 2.3e-07 61.6 155 27.7
HanXRQChr01g0026011 Helianthus annuus HOM05D000218 ORTHO05D000125 2.3e-07 61.6 200 27.5
Potri.006G129600 Populus trichocarpa HOM05D000218 ORTHO05D000125 2.3e-07 61.6 155 27.7
RcHm_v2.0_Chr7g0213511 Rosa chinensis HOM05D000218 ORTHO05D000125 2.3e-07 61.6 162 27.2
BcaB08g34826 Brassica carinata HOM05D000218 ORTHO05D000125 3.0e-07 61.2 189 26.5
CsaV3_3G005390 Cucumis sativus L. HOM05D000218 ORTHO05D000125 3.0e-07 61.2 182 26.9
Os04g0628100 Oryza sativa ssp. japonica HOM05D000218 ORTHO05D000125 3.0e-07 61.2 155 27.7
Aqoxy1G03887 Aquilegia oxysepala HOM05D000218 ORTHO05D000125 3.9e-07 60.8 268 22.4
SEGI_16078 Sequoiadendron giganteum HOM05D000218 ORTHO05D000125 3.9e-07 60.8 188 27.1
PSO724G1227 Papaver somniferum HOM05D000218 ORTHO05D000125 6.6e-07 60.1 155 27.1
AT5G37640 Arabidopsis thaliana HOM05D000218 ORTHO05D000125 8.6e-07 59.7 142 26.8
C03p31640 Brassica napus HOM05D000218 ORTHO05D000125 8.6e-07 59.7 155 27.1
Cc02_g31580 Coffea canephora HOM05D000218 ORTHO05D000125 8.6e-07 59.7 154 27.9
AagrBONN_evm.TU.Sc2ySwM_228.186 Anthoceros agrestis HOM05D000218 ORTHO05D000125 1.5e-06 58.9 176 25.6
Thhalv10022008m.g Eutrema salsugineum HOM05D000218 ORTHO05D000125 1.5e-06 58.9 155 25.8
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.5e-06 58.9 146 30.8
BcaC02g11781 Brassica carinata HOM05D000218 ORTHO05D000125 1.9e-06 58.5 233 25.8
SEGI_24423 Sequoiadendron giganteum HOM05D000218 ORTHO05D000125 1.9e-06 58.5 162 26.5
AagrBONN_evm.TU.Sc2ySwM_368.2460 Anthoceros agrestis HOM05D000218 ORTHO05D000125 2.5e-06 58.2 187 25.1
Aqoxy1G03886 Aquilegia oxysepala HOM05D000218 ORTHO05D000125 2.5e-06 58.2 131 30.5
MELO3C032916.2 Cucumis melo HOM05D000218 ORTHO05D000125 2.5e-06 58.2 156 27.6
HanXRQChr01g0025871 Helianthus annuus HOM05D000218 ORTHO05D000125 2.5e-06 58.2 185 26.5
Os07g0489500 Oryza sativa ssp. japonica HOM05D000218 ORTHO05D000125 2.5e-06 58.2 127 31.5
HanXRQChr01g0026821 Helianthus annuus HOM05D000218 ORTHO05D000125 3.3e-06 57.8 189 25.4
ECA236G1873 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.3e-06 57.4 165 25.5
HanXRQChr01g0026031 Helianthus annuus HOM05D000218 ORTHO05D000125 4.3e-06 57.4 155 25.2
HanXRQChr01g0026811 Helianthus annuus HOM05D000218 ORTHO05D000125 5.6e-06 57.0 189 25.4
Hma1.2p1_0570F.1_g180530 Hydrangea macrophylla HOM05D000218 ORTHO05D000125 5.6e-06 57.0 260 24.2
Aqoxy1G03884 Aquilegia oxysepala HOM05D000218 ORTHO05D000125 7.3e-06 56.6 124 28.2
Carub.0006s0698 Capsella rubella HOM05D000218 ORTHO05D000125 7.3e-06 56.6 86 36.0
HanXRQChr01g0025921 Helianthus annuus HOM05D000218 ORTHO05D000125 7.3e-06 56.6 213 23.5
RcHm_v2.0_Chr4g0394221 Rosa chinensis HOM05D000218 ORTHO05D000125 7.3e-06 56.6 246 22.8
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 9.6e-06 56.2 138 27.5
HanXRQChr01g0025951 Helianthus annuus HOM05D000218 ORTHO05D000125 9.6e-06 56.2 202 25.2
PSO229G0037 Papaver somniferum HOM05D000218 ORTHO05D000125 9.6e-06 56.2 143 28.0
PSO729G0234 Papaver somniferum HOM05D000218 ORTHO05D000125 9.6e-06 56.2 71 38.0


User provided reference genes

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