Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15452 Sequoiadendron giganteum HOM05D005823 ORTHO05D007536 4.6e-219 764.2 373 100.0
SEGI_18611 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 4.5e-73 279.3 203 70.9
SEGI_37560 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 3.8e-56 223.0 197 58.4
SEGI_37083 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 3.1e-50 203.4 127 74.0
SEGI_08556 Sequoiadendron giganteum HOM05D009239 ORTHO05D017074 1.4e-39 167.9 172 55.2
SEGI_40002 Sequoiadendron giganteum HOM05D009239 ORTHO05D000002 2.6e-33 147.1 141 53.9
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 2.5e-31 140.6 151 46.4
HPP92_024322 Vanilla planifolia HOM05D005823 ORTHO05D007536 2.2e-27 127.5 105 61.9
Mapoly0060s0015 Marchantia polymorpha HOM05D005823 ORTHO05D007536 2.8e-27 127.1 80 72.5
ATR0730G038 Amborella trichopoda HOM05D005823 ORTHO05D007536 9.1e-26 122.1 81 70.4
SMO052G0001 Selaginella moellendorffii HOM05D005823 ORTHO05D007536 2.6e-25 120.6 88 63.6
MBI16_g05631_MAGBIO Magnolia biondii HOM05D005823 ORTHO05D007536 3.5e-25 120.2 101 59.4
SMO119G0254 Selaginella moellendorffii HOM05D005823 ORTHO05D007536 3.5e-25 120.2 88 62.5
Pp3c16_6290 Physcomitrium patens HOM05D005823 ORTHO05D007536 4.5e-25 119.8 81 67.9
Manes.17G116600 Manihot esculenta HOM05D005823 ORTHO05D007536 7.7e-25 119.0 101 57.4
AagrBONN_evm.TU.Sc2ySwM_228.3021 Anthoceros agrestis HOM05D005823 ORTHO05D007536 1.3e-24 118.2 80 67.5
Potri.001G349000 Populus trichocarpa HOM05D005823 ORTHO05D007536 1.3e-24 118.2 81 63.0
Os08g0379300 Oryza sativa ssp. japonica HOM05D005823 ORTHO05D007536 1.7e-24 117.9 106 55.7
Eucgr.I01789 Eucalyptus grandis HOM05D005823 ORTHO05D007536 3.8e-24 116.7 78 65.4
SalBow1G1924 Salvia bowleyana HOM05D005823 ORTHO05D007536 5.0e-24 116.3 81 64.2
EL10Ac4g08593 Beta vulgaris HOM05D005823 ORTHO05D007536 8.5e-24 115.5 89 59.6
PGR142G1348 Punica granatum HOM05D005823 ORTHO05D007536 1.1e-23 115.2 78 64.1
QL02p076317 Quercus lobata HOM05D005823 ORTHO05D007536 1.1e-23 115.2 81 63.0
Sabra16G0228500 Salix brachista HOM05D005823 ORTHO05D007536 1.1e-23 115.2 81 61.7
Nitab4.5_0004753g0050 Nicotiana tabacum HOM05D005823 ORTHO05D007536 1.5e-23 114.8 116 50.9
THA.LOC104821071 Tarenaya hassleriana HOM05D005823 ORTHO05D007536 1.5e-23 114.8 82 62.2
arahy.Tifrunner.gnm1.ann1.AB8GL3 Arachis hypogaea HOM05D005823 ORTHO05D007536 1.9e-23 114.4 81 63.0
CDE11G0210 Ceratophyllum demersum HOM05D005823 ORTHO05D007536 1.9e-23 114.4 81 64.2
Dinv35071 Davidia involucrata HOM05D005823 ORTHO05D007536 1.9e-23 114.4 101 54.5
Nitab4.5_0004348g0040 Nicotiana tabacum HOM05D005823 ORTHO05D007536 1.9e-23 114.4 116 50.9
Atru.chr6.2309 Acer truncatum HOM05D005823 ORTHO05D007536 2.5e-23 114.0 81 61.7
CiPaw.03G038900 Carya illinoinensis HOM05D005823 ORTHO05D007536 2.5e-23 114.0 88 58.0
Migut.H00112 Erythranthe guttata HOM05D005823 ORTHO05D007536 2.5e-23 114.0 88 58.0
Hma1.2p1_0858F.1_g229360 Hydrangea macrophylla HOM05D005823 ORTHO05D007536 2.5e-23 114.0 82 59.8
Hma1.2p1_0858F.1_g229370 Hydrangea macrophylla HOM05D005823 ORTHO05D007536 2.5e-23 114.0 82 59.8
Lj7A592T43 Lonicera japonica HOM05D005823 ORTHO05D007536 2.5e-23 114.0 81 63.0
CAN.G544.5 Capsicum annuum HOM05D005823 ORTHO05D007536 3.2e-23 113.6 81 61.7
DCAR_015046 Daucus carota HOM05D005823 ORTHO05D007536 3.2e-23 113.6 88 58.0
MD09G1032300 Malus domestica HOM05D005823 ORTHO05D007536 3.2e-23 113.6 82 61.0
Thecc.04G010400 Theobroma cacao HOM05D005823 ORTHO05D007536 3.2e-23 113.6 81 60.5
C03p39600 Brassica napus HOM05D005823 ORTHO05D007536 4.2e-23 113.2 82 61.0
BolC3t16226H Brassica oleracea HOM05D005823 ORTHO05D007536 4.2e-23 113.2 82 61.0
PSO832G4481 Papaver somniferum HOM05D005823 ORTHO05D007536 4.2e-23 113.2 81 59.3
Ah.06g187250 Amaranthus hybridus HOM05D005823 ORTHO05D007536 5.5e-23 112.8 89 56.2
Sp3g00560 Schrenkiella parvula HOM05D005823 ORTHO05D007536 5.5e-23 112.8 82 62.2
arahy.Tifrunner.gnm1.ann1.1I70XP Arachis hypogaea HOM05D005823 ORTHO05D007536 7.2e-23 112.5 80 62.5
Ciclev10017987m.g Citrus clementina HOM05D005823 ORTHO05D007536 7.2e-23 112.5 101 54.5
Cc07_g02150 Coffea canephora HOM05D005823 ORTHO05D007536 7.2e-23 112.5 81 61.7
PGSC0003DMG400030092 Solanum tuberosum HOM05D005823 ORTHO05D007536 7.2e-23 112.5 81 60.5
CSS0010337 Camellia sinensis var. sinensis HOM05D005823 ORTHO05D007536 9.4e-23 112.1 81 60.5
CSS0040897 Camellia sinensis var. sinensis HOM05D005823 ORTHO05D007536 9.4e-23 112.1 81 60.5
Glyma.16G073500 Glycine max HOM05D005823 ORTHO05D007536 9.4e-23 112.1 108 50.9
GSVIVG01032464001 Vitis vinifera HOM05D005823 ORTHO05D007536 9.4e-23 112.1 81 60.5
Actinidia36091 Actinidia chinensis HOM05D005823 ORTHO05D007536 1.2e-22 111.7 81 59.3
Nn4g22771 Nelumbo nucifera HOM05D005823 ORTHO05D007536 1.2e-22 111.7 81 63.0
vmacro05834 Vaccinium macrocarpon HOM05D005823 ORTHO05D007536 1.2e-22 111.7 81 59.3
CARHR075440 Cardamine hirsuta HOM05D005823 ORTHO05D007536 1.6e-22 111.3 82 61.0
Duzib187G0863 Durio zibethinus HOM05D005823 ORTHO05D007536 1.6e-22 111.3 81 59.3
FvH4_6g50790 Fragaria vesca HOM05D005823 ORTHO05D007536 1.6e-22 111.3 82 59.8
FAN02G0427 Fragaria x ananassa HOM05D005823 ORTHO05D007536 1.6e-22 111.3 82 59.8
FAN05G1760 Fragaria x ananassa HOM05D005823 ORTHO05D007536 1.6e-22 111.3 82 59.8
FAN14G3736 Fragaria x ananassa HOM05D005823 ORTHO05D007536 1.6e-22 111.3 82 59.8
PSO063G0513 Papaver somniferum HOM05D005823 ORTHO05D007536 1.6e-22 111.3 81 59.3
RcHm_v2.0_Chr2g0172181 Rosa chinensis HOM05D005823 ORTHO05D007536 1.6e-22 111.3 82 59.8
Sopen12g025140 Solanum pennellii HOM05D005823 ORTHO05D007536 1.6e-22 111.3 81 59.3
SGA_v2.0_scaffold135G34877 Striga asiatica HOM05D005823 ORTHO05D007536 1.6e-22 111.3 81 60.5
unitig_62.g23151 Utricularia gibba HOM05D005823 ORTHO05D007536 1.6e-22 111.3 78 64.1
Rhsim10G0021100 Rhododendron simsii HOM05D005823 ORTHO05D007536 2.1e-22 110.9 81 59.3
BcaC01g04522 Brassica carinata HOM05D005823 ORTHO05D007536 2.7e-22 110.5 82 59.8
A03p32520 Brassica napus HOM05D005823 ORTHO05D007536 2.7e-22 110.5 82 59.8
BraA03t12421Z Brassica rapa HOM05D005823 ORTHO05D007536 2.7e-22 110.5 82 59.8
AL3G10660 Arabidopsis lyrata HOM05D005823 ORTHO05D007536 3.6e-22 110.2 82 59.8
AT3G01510 Arabidopsis thaliana HOM05D005823 ORTHO05D007536 3.6e-22 110.2 82 59.8
CANSAT64G0786 Cannabis sativa HOM05D005823 ORTHO05D007536 3.6e-22 110.2 81 59.3
MELO3C009960.2 Cucumis melo HOM05D005823 ORTHO05D007536 3.6e-22 110.2 102 51.0
CsaV3_3G042460 Cucumis sativus L. HOM05D005823 ORTHO05D007536 3.6e-22 110.2 102 51.0
FAN09G0265 Fragaria x ananassa HOM05D005823 ORTHO05D007536 3.6e-22 110.2 82 58.5
Sed0002272 Sechium edule HOM05D005823 ORTHO05D007536 3.6e-22 110.2 82 58.5
TWI36G1575 Tripterygium wilfordii HOM05D005823 ORTHO05D007536 3.6e-22 110.2 81 59.3
Gohir.D07G227600 Gossypium hirsutum HOM05D005823 ORTHO05D007536 4.7e-22 109.8 78 61.5
Gorai.001G262500 Gossypium raimondii HOM05D005823 ORTHO05D007536 4.7e-22 109.8 78 61.5
Medtr7g034465 Medicago truncatula HOM05D005823 ORTHO05D007536 4.7e-22 109.8 88 55.7
Thhalv10020379m.g Eutrema salsugineum HOM05D005823 ORTHO05D007536 6.1e-22 109.4 89 56.2
Gohir.A07G220900 Gossypium hirsutum HOM05D005823 ORTHO05D007536 6.1e-22 109.4 81 58.0
Zm00001eb042540 Zea mays HOM05D005823 ORTHO05D007536 6.1e-22 109.4 90 57.8
Aqoxy3G02952 Aquilegia oxysepala HOM05D005823 ORTHO05D007536 8.0e-22 109.0 81 59.3
Carub.0003s0058 Capsella rubella HOM05D005823 ORTHO05D007536 8.0e-22 109.0 82 58.5
Glyma.19G069800 Glycine max HOM05D005823 ORTHO05D007536 8.0e-22 109.0 81 60.5
Lj1g0008834 Lotus japonicus HOM05D005823 ORTHO05D007536 8.0e-22 109.0 81 60.5
TAR374G0440 Trochodendron aralioides HOM05D005823 ORTHO05D007536 8.0e-22 109.0 81 60.5
Cpa.g.sc215.12 Carica papaya HOM05D005823 ORTHO05D007536 1.0e-21 108.6 81 58.0
Ca_14483_v3 Cicer arietinum L. HOM05D005823 ORTHO05D007536 1.0e-21 108.6 81 59.3
Sc03g0007950 Simmondsia chinensis HOM05D005823 ORTHO05D007536 1.4e-21 108.2 81 56.8
Lalb_Chr10g0093861 Lupinus albus HOM05D005823 ORTHO05D007536 1.8e-21 107.8 81 59.3
Psat3g162320 Pisum sativum HOM05D005823 ORTHO05D007536 1.8e-21 107.8 81 59.3
TPR.G30824 Trifolium pratense HOM05D005823 ORTHO05D007536 1.8e-21 107.8 81 59.3
Phvul.008G155300 Phaseolus vulgaris HOM05D005823 ORTHO05D007536 3.0e-21 107.1 81 59.3
HanXRQChr14g0450321 Helianthus annuus HOM05D005823 ORTHO05D007536 4.0e-21 106.7 81 59.3
Oeu054687.1 Olea europaea HOM05D005823 ORTHO05D007536 4.0e-21 106.7 81 56.8
Aa31LG5G10620 Aethionema arabicum HOM05D005823 ORTHO05D007536 5.2e-21 106.3 75 64.0
Lsat_1_v5_gn_2_92000 Lactuca sativa HOM05D005823 ORTHO05D007536 6.7e-21 105.9 81 58.0
COL.COLO4_28986 Corchorus olitorius HOM05D005823 ORTHO05D007536 8.8e-21 105.5 76 61.8
Hund20083 Selenicereus undatus HOM05D005823 ORTHO05D007536 4.4e-20 103.2 115 48.7
SEGI_34481 Sequoiadendron giganteum HOM05D009239 ORTHO05D000002 5.7e-20 102.8 105 56.2
ClCG10G014190 Citrullus lanatus HOM05D005823 ORTHO05D007536 7.5e-20 102.4 81 55.6
ECA238G2958 Erigeron canadensis HOM05D005823 ORTHO05D007536 7.5e-20 102.4 88 52.3
Sopen12g025160 Solanum pennellii HOM05D005823 ORTHO05D007536 7.5e-20 102.4 81 54.3
VMungo1383G0860 Vigna mungo HOM05D005823 ORTHO05D007536 2.7e-17 94.0 83 54.2
SEGI_40901 Sequoiadendron giganteum HOM05D003901 ORTHO05D004511 2.0e-12 77.8 145 35.9
AUR62035471 Chenopodium quinoa HOM05D005823 ORTHO05D007536 5.7e-12 76.3 46 69.6
CBR_g34939 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-11 74.3 81 42.0
SEGI_14642 Sequoiadendron giganteum HOM05D000555 ORTHO05D000646 2.2e-11 74.3 156 35.9
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.1e-10 72.0 164 32.9
SEGI_37216 Sequoiadendron giganteum HOM05D015854 ORTHO05D005133 7.0e-10 69.3 158 32.3
SEGI_15641 Sequoiadendron giganteum HOM05D000014 ORTHO05D000093 2.0e-09 67.8 122 36.9
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.0e-09 67.8 166 31.9
SEGI_39981 Sequoiadendron giganteum HOM05D011934 ORTHO05D000646 2.7e-09 67.4 184 31.0
SEGI_00417 Sequoiadendron giganteum HOM05D002775 ORTHO05D006750 4.5e-09 66.6 167 31.7
SEGI_14215 Sequoiadendron giganteum HOM05D011934 ORTHO05D000646 3.8e-08 63.5 186 29.0
MD01G1038900 Malus domestica HOM05D000992 ORTHO05D006704 6.6e-08 62.8 76 40.8
RcHm_v2.0_Chr1g0336591 Rosa chinensis HOM05D000992 ORTHO05D006704 8.6e-08 62.4 101 32.7
Phvul.009G141000 Phaseolus vulgaris HOM05D000992 ORTHO05D007525 1.5e-07 61.6 74 44.6
SEGI_33041 Sequoiadendron giganteum HOM05D034680 ORTHO05D000002 1.5e-07 61.6 82 41.5
FAN06G2553 Fragaria x ananassa HOM05D000992 ORTHO05D006704 1.9e-07 61.2 101 32.7
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 1.9e-07 61.2 74 44.6
Cpa.g.sc128.70 Carica papaya HOM05D000992 ORTHO05D006704 2.5e-07 60.8 89 33.7
FvH4_7g06850 Fragaria vesca HOM05D000992 ORTHO05D006704 2.5e-07 60.8 101 32.7
AagrBONN_evm.TU.Sc2ySwM_340.355 Anthoceros agrestis HOM05D000992 ORTHO05D007525 3.3e-07 60.5 95 37.9
arahy.Tifrunner.gnm1.ann1.U5NZWJ Arachis hypogaea HOM05D000992 ORTHO05D006704 3.3e-07 60.5 89 33.7
Hma1.2p1_1275F.1_g272030 Hydrangea macrophylla HOM05D000992 ORTHO05D006704 3.3e-07 60.5 109 31.2
SEGI_33985 Sequoiadendron giganteum HOM05D000230 ORTHO05D000176 3.3e-07 60.5 141 27.7
PSO339G0066 Papaver somniferum HOM05D000992 ORTHO05D006704 4.2e-07 60.1 77 37.7
ClCG05G021480 Citrullus lanatus HOM05D000992 ORTHO05D006704 9.5e-07 58.9 101 31.7
COL.COLO4_07701 Corchorus olitorius HOM05D000992 ORTHO05D006704 9.5e-07 58.9 121 30.6
MELO3C012378.2 Cucumis melo HOM05D000992 ORTHO05D006704 9.5e-07 58.9 101 31.7
CsaV3_5G035770 Cucumis sativus L. HOM05D000992 ORTHO05D006704 9.5e-07 58.9 101 31.7
Nn2g13910 Nelumbo nucifera HOM05D000992 ORTHO05D006704 9.5e-07 58.9 101 30.7
Sed0001799 Sechium edule HOM05D000992 ORTHO05D006704 9.5e-07 58.9 101 31.7
arahy.Tifrunner.gnm1.ann1.98V0PV Arachis hypogaea HOM05D000992 ORTHO05D006704 1.2e-06 58.5 75 37.3
Cre09.g403050 Chlamydomonas reinhardtii HOM05D000992 ORTHO05D007525 1.2e-06 58.5 73 39.7
FAN01G0397 Fragaria x ananassa HOM05D000992 ORTHO05D006704 1.2e-06 58.5 101 31.7
FAN03G0142 Fragaria x ananassa HOM05D000992 ORTHO05D006704 1.2e-06 58.5 101 31.7
FAN10G3684 Fragaria x ananassa HOM05D000992 ORTHO05D006704 1.2e-06 58.5 101 31.7
PSO063G1483 Papaver somniferum HOM05D000992 ORTHO05D006704 1.2e-06 58.5 77 36.4
SEGI_19741 Sequoiadendron giganteum HOM05D011934 ORTHO05D000002 1.2e-06 58.5 158 31.0
SEGI_25655 Sequoiadendron giganteum HOM05D009239 ORTHO05D007201 1.2e-06 58.5 37 73.0
Sed0016850 Sechium edule HOM05D000992 ORTHO05D006704 1.6e-06 58.2 101 30.7
Solyc12g062250.2 Solanum lycopersicum HOM05D005823 ORTHO05D007536 1.6e-06 58.2 35 65.7
Aa31LG10G7270 Aethionema arabicum HOM05D000992 ORTHO05D006704 2.1e-06 57.8 84 33.3
DCAR_014589 Daucus carota HOM05D000992 ORTHO05D007525 2.1e-06 57.8 74 43.2
Manes.10G005000 Manihot esculenta HOM05D000992 ORTHO05D007525 2.1e-06 57.8 83 38.6
unitig_61.g26199 Utricularia gibba HOM05D000992 ORTHO05D006704 2.1e-06 57.8 75 37.3
Dinv31271 Davidia involucrata HOM05D000992 ORTHO05D006704 2.8e-06 57.4 75 37.3
Manes.10G053500 Manihot esculenta HOM05D000992 ORTHO05D006704 2.8e-06 57.4 90 33.3
PRCOL_00000216 Prasinoderma coloniale HOM05D000992 ORTHO05D007525 2.8e-06 57.4 70 41.4
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.8e-06 57.4 124 31.5
ECA232G2846 Erigeron canadensis HOM05D000992 ORTHO05D006704 3.6e-06 57.0 75 30.7
Manes.06G021000 Manihot esculenta HOM05D000992 ORTHO05D006704 3.6e-06 57.0 177 26.6
AT3G52180 Arabidopsis thaliana HOM05D000992 ORTHO05D006704 4.7e-06 56.6 101 29.7
CiPaw.01G264400 Carya illinoinensis HOM05D000992 ORTHO05D006704 4.7e-06 56.6 102 30.4
Duzib128G0880 Durio zibethinus HOM05D000992 ORTHO05D006704 4.7e-06 56.6 138 28.3
Glyma.04G220900 Glycine max HOM05D000992 ORTHO05D007525 4.7e-06 56.6 74 40.5
MD15G1312700 Malus domestica HOM05D000992 ORTHO05D006704 4.7e-06 56.6 102 32.4
TWI15G0799 Tripterygium wilfordii HOM05D000992 ORTHO05D006704 4.7e-06 56.6 77 33.8
CANSAT56G1783 Cannabis sativa HOM05D000992 ORTHO05D006704 6.1e-06 56.2 101 29.7
Lalb_Chr21g0313101 Lupinus albus HOM05D000992 ORTHO05D006704 6.1e-06 56.2 75 36.0
Peaxi162Scf00700g00625 Petunia axillaris HOM05D005823 ORTHO05D007536 6.1e-06 56.2 35 65.7
THA.LOC104802452 Tarenaya hassleriana HOM05D000992 ORTHO05D006704 6.1e-06 56.2 82 34.1
ATR0723G004 Amborella trichopoda HOM05D000992 ORTHO05D006704 8.0e-06 55.8 75 37.3
Carub.0005s1854 Capsella rubella HOM05D000992 ORTHO05D006704 8.0e-06 55.8 101 29.7
Gohir.A05G393800 Gossypium hirsutum HOM05D000992 ORTHO05D006704 8.0e-06 55.8 82 31.7
Medtr3g094300 Medicago truncatula HOM05D000992 ORTHO05D007525 8.0e-06 55.8 71 43.7
SEGI_11533 Sequoiadendron giganteum HOM05D000413 ORTHO05D000292 8.0e-06 55.8 114 33.3
SEGI_13483 Sequoiadendron giganteum HOM05D000992 ORTHO05D007525 8.0e-06 55.8 73 41.1
Thecc.10G091400 Theobroma cacao HOM05D000992 ORTHO05D006704 8.0e-06 55.8 138 29.0


User provided reference genes

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