Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12690 Sequoiadendron giganteum HOM05D003226 ORTHO05D005723 1.7e-88 329.3 170 100.0
SEGI_40307 Sequoiadendron giganteum HOM05D003226 ORTHO05D011023 1.7e-64 249.6 129 100.0
BcaC06g33656 Brassica carinata HOM05D003226 ORTHO05D005723 6.0e-09 65.1 145 30.3
A06p40240 Brassica napus HOM05D003226 ORTHO05D005723 6.0e-09 65.1 145 30.3
C07p37860 Brassica napus HOM05D003226 ORTHO05D005723 6.0e-09 65.1 145 30.3
BolC7t44308H Brassica oleracea HOM05D003226 ORTHO05D005723 6.0e-09 65.1 145 30.3
BraA06t26939Z Brassica rapa HOM05D003226 ORTHO05D005723 6.0e-09 65.1 145 30.3
Sp2g17560 Schrenkiella parvula HOM05D003226 ORTHO05D005723 6.0e-09 65.1 147 29.9
Carub.0005s0749 Capsella rubella HOM05D003226 ORTHO05D005723 7.9e-09 64.7 145 30.3
PSO170G5698 Papaver somniferum HOM05D003226 ORTHO05D005723 7.9e-09 64.7 143 32.2
SGA_v2.0_scaffold499G52482 Striga asiatica HOM05D003226 ORTHO05D005723 7.9e-09 64.7 143 30.1
THA.LOC104805468 Tarenaya hassleriana HOM05D003226 ORTHO05D005723 7.9e-09 64.7 144 31.2
AL8G21600 Arabidopsis lyrata HOM05D003226 ORTHO05D005723 1.0e-08 64.3 145 30.3
Thhalv10003529m.g Eutrema salsugineum HOM05D003226 ORTHO05D005723 1.0e-08 64.3 145 30.3
PSO017G5293 Papaver somniferum HOM05D003226 ORTHO05D005723 1.0e-08 64.3 143 31.5
AT5G48600 Arabidopsis thaliana HOM05D003226 ORTHO05D005723 1.3e-08 63.9 145 30.3
Eucgr.I01943 Eucalyptus grandis HOM05D003226 ORTHO05D005723 1.3e-08 63.9 143 30.1
Lj7C393G0 Lonicera japonica HOM05D003226 ORTHO05D005723 2.3e-08 63.2 144 29.9
Aa31LG2G4270 Aethionema arabicum HOM05D003226 ORTHO05D005723 3.0e-08 62.8 141 30.5
Aqoxy5G00799 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 3.0e-08 62.8 146 28.8
CARHR037400 Cardamine hirsuta HOM05D003226 ORTHO05D005723 3.0e-08 62.8 145 29.7
Sed0013037 Sechium edule HOM05D003226 ORTHO05D005723 3.9e-08 62.4 146 28.8
HanXRQChr15g0473961 Helianthus annuus HOM05D003226 ORTHO05D005723 5.1e-08 62.0 143 28.7
Nitab4.5_0026203g0010 Nicotiana tabacum HOM05D003226 ORTHO05D005723 5.1e-08 62.0 171 28.1
Potri.017G083200 Populus trichocarpa HOM05D003226 ORTHO05D005723 5.1e-08 62.0 145 29.7
Sabra17G0073700 Salix brachista HOM05D003226 ORTHO05D005723 5.1e-08 62.0 145 29.7
EL10Ac2g02987 Beta vulgaris HOM05D003226 ORTHO05D005723 6.7e-08 61.6 143 29.4
Glyma.13G062800 Glycine max HOM05D003226 ORTHO05D005723 6.7e-08 61.6 145 28.3
Nitab4.5_0000274g0210 Nicotiana tabacum HOM05D003226 ORTHO05D005723 8.7e-08 61.2 145 29.7
QL02p063973 Quercus lobata HOM05D003226 ORTHO05D005723 8.7e-08 61.2 145 29.0
VMungo0464G1600 Vigna mungo HOM05D003226 ORTHO05D005723 8.7e-08 61.2 147 29.3
Aqoxy5G00921 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 1.1e-07 60.8 144 27.8
CANSAT64G2675 Cannabis sativa HOM05D003226 ORTHO05D005723 1.1e-07 60.8 144 29.2
Cre12.g493400 Chlamydomonas reinhardtii HOM05D003226 ORTHO05D005723 1.5e-07 60.5 147 32.7
CsaV3_5G027630 Cucumis sativus L. HOM05D003226 ORTHO05D005723 1.5e-07 60.5 145 29.0
Migut.H00924 Erythranthe guttata HOM05D003226 ORTHO05D005723 1.5e-07 60.5 143 29.4
Psat4g106040 Pisum sativum HOM05D003226 ORTHO05D005723 1.5e-07 60.5 144 28.5
AUR62029891 Chenopodium quinoa HOM05D003226 ORTHO05D005723 1.9e-07 60.1 143 28.7
AUR62034416 Chenopodium quinoa HOM05D003226 ORTHO05D005723 1.9e-07 60.1 143 28.7
FvH4_2g39941 Fragaria vesca HOM05D003226 ORTHO05D005723 1.9e-07 60.1 143 28.7
FAN20G3149 Fragaria x ananassa HOM05D003226 ORTHO05D005723 1.9e-07 60.1 143 28.7
Glyma.19G022800 Glycine max HOM05D003226 ORTHO05D005723 1.9e-07 60.1 145 27.6
Prupe.3G267300 Prunus persica HOM05D003226 ORTHO05D005723 1.9e-07 60.1 143 29.4
Rhsim07G0120700 Rhododendron simsii HOM05D003226 ORTHO05D005723 1.9e-07 60.1 147 27.9
Hund08915 Selenicereus undatus HOM05D003226 ORTHO05D005723 1.9e-07 60.1 141 29.1
TAR381G0539 Trochodendron aralioides HOM05D003226 ORTHO05D005723 1.9e-07 60.1 143 29.4
Cfa007554 Carpinus fangiana HOM05D003226 ORTHO05D005723 2.5e-07 59.7 145 28.3
Cc07_g03380 Coffea canephora HOM05D003226 ORTHO05D005723 2.5e-07 59.7 143 29.4
MELO3C022910.2 Cucumis melo HOM05D003226 ORTHO05D005723 2.5e-07 59.7 145 29.0
Dinv33760 Davidia involucrata HOM05D003226 ORTHO05D005723 2.5e-07 59.7 144 28.5
FvH4_5g30910 Fragaria vesca HOM05D003226 ORTHO05D005723 2.5e-07 59.7 143 30.1
FAN18G4273 Fragaria x ananassa HOM05D003226 ORTHO05D005723 2.5e-07 59.7 143 30.1
Rhsim10G0039000 Rhododendron simsii HOM05D003226 ORTHO05D005723 2.5e-07 59.7 143 29.4
vmacro05694 Vaccinium macrocarpon HOM05D003226 ORTHO05D005723 2.5e-07 59.7 143 29.4
GSVIVG01011408001 Vitis vinifera HOM05D003226 ORTHO05D005723 2.5e-07 59.7 144 28.5
Manes.02G046500 Manihot esculenta HOM05D003226 ORTHO05D005723 3.3e-07 59.3 146 30.8
RcHm_v2.0_Chr6g0300801 Rosa chinensis HOM05D003226 ORTHO05D005723 3.3e-07 59.3 143 28.0
Aqoxy6G02361 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 4.3e-07 58.9 75 38.7
CAN.G206.153 Capsicum annuum HOM05D003226 ORTHO05D005723 4.3e-07 58.9 145 29.0
CDE04G2390 Ceratophyllum demersum HOM05D003226 ORTHO05D005723 4.3e-07 58.9 140 30.0
AUR62039793 Chenopodium quinoa HOM05D003226 ORTHO05D005723 4.3e-07 58.9 139 31.7
FAN15G3277 Fragaria x ananassa HOM05D003226 ORTHO05D005723 4.3e-07 58.9 143 28.7
Hma1.2p1_0409F.1_g146951 Hydrangea macrophylla HOM05D003226 ORTHO05D005723 4.3e-07 58.9 145 29.0
Lj4g0003862 Lotus japonicus HOM05D003226 ORTHO05D005723 4.3e-07 58.9 143 28.0
Lalb_Chr21g0318701 Lupinus albus HOM05D003226 ORTHO05D005723 4.3e-07 58.9 147 27.9
Phvul.004G029000 Phaseolus vulgaris HOM05D003226 ORTHO05D005723 4.3e-07 58.9 144 28.5
RcHm_v2.0_Chr7g0223741 Rosa chinensis HOM05D003226 ORTHO05D005723 4.3e-07 58.9 145 28.3
Solyc02g087980.3 Solanum lycopersicum HOM05D003226 ORTHO05D005723 4.3e-07 58.9 145 29.7
Sopen02g032720 Solanum pennellii HOM05D003226 ORTHO05D005723 4.3e-07 58.9 145 29.7
ClCG11G000030 Citrullus lanatus HOM05D003226 ORTHO05D005723 5.6e-07 58.5 145 29.0
Ciclev10010934m.g Citrus clementina HOM05D003226 ORTHO05D005723 5.6e-07 58.5 140 30.0
Oeu035695.1 Olea europaea HOM05D003226 ORTHO05D005723 5.6e-07 58.5 143 28.7
Peaxi162Scf00011g02911 Petunia axillaris HOM05D003226 ORTHO05D005723 5.6e-07 58.5 145 29.7
PGSC0003DMG400001326 Solanum tuberosum HOM05D003226 ORTHO05D005723 5.6e-07 58.5 145 29.7
Actinidia06098 Actinidia chinensis HOM05D003226 ORTHO05D005723 7.4e-07 58.2 144 28.5
arahy.Tifrunner.gnm1.ann1.R713I2 Arachis hypogaea HOM05D003226 ORTHO05D005723 7.4e-07 58.2 143 28.7
PGR004G1048 Punica granatum HOM05D003226 ORTHO05D005723 7.4e-07 58.2 141 28.4
SGA_v2.0_scaffold1G00329 Striga asiatica HOM05D003226 ORTHO05D005723 7.4e-07 58.2 143 28.0
Zm00001eb291710 Zea mays HOM05D003226 ORTHO05D005723 7.4e-07 58.2 146 28.8
Ah.10g031620 Amaranthus hybridus HOM05D003226 ORTHO05D005723 9.6e-07 57.8 141 29.1
ATR0605G313 Amborella trichopoda HOM05D003226 ORTHO05D005723 9.6e-07 57.8 149 27.5
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 9.6e-07 57.8 127 37.8
CSS0044326 Camellia sinensis var. sinensis HOM05D003226 ORTHO05D005723 9.6e-07 57.8 142 28.9
ECA246G4217 Erigeron canadensis HOM05D003226 ORTHO05D005723 9.6e-07 57.8 137 28.5
TPR.G36529 Trifolium pratense HOM05D003226 ORTHO05D005723 9.6e-07 57.8 145 26.9
arahy.Tifrunner.gnm1.ann1.3W1S0R Arachis hypogaea HOM05D004102 ORTHO05D005307 1.3e-06 57.4 122 32.8
Lsat_1_v5_gn_3_101601 Lactuca sativa HOM05D003226 ORTHO05D005723 1.3e-06 57.4 144 27.8
MD02G1198100 Malus domestica HOM05D003226 ORTHO05D005723 1.3e-06 57.4 143 28.7
SMO076G0001 Selaginella moellendorffii HOM05D002696 ORTHO05D003940 1.3e-06 57.4 127 37.0
TAR375G0513 Trochodendron aralioides HOM05D003226 ORTHO05D005723 1.3e-06 57.4 137 29.2
Cpa.g.sc140.54 Carica papaya HOM05D003226 ORTHO05D005723 1.6e-06 57.0 169 27.8
COL.COLO4_33309 Corchorus olitorius HOM05D003226 ORTHO05D005723 1.6e-06 57.0 144 28.5
Duzib187G0629 Durio zibethinus HOM05D003226 ORTHO05D005723 1.6e-06 57.0 143 29.4
Gohir.D09G014800 Gossypium hirsutum HOM05D003226 ORTHO05D005723 1.6e-06 57.0 143 29.4
Gorai.006G016800 Gossypium raimondii HOM05D003226 ORTHO05D005723 1.6e-06 57.0 143 29.4
Pp3c13_8840 Physcomitrium patens HOM05D002696 ORTHO05D003940 1.6e-06 57.0 127 37.8
Thecc.04G082300 Theobroma cacao HOM05D003226 ORTHO05D005723 1.6e-06 57.0 143 29.4
unitig_899.g15524 Utricularia gibba HOM05D003226 ORTHO05D005723 1.6e-06 57.0 72 40.3
Atru.chr8.162 Acer truncatum HOM05D003226 ORTHO05D005723 2.1e-06 56.6 137 29.2
FvH4_4g18080 Fragaria vesca HOM05D003226 ORTHO05D005723 2.1e-06 56.6 75 40.0
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 2.1e-06 56.6 119 38.7
Medtr8g072890 Medicago truncatula HOM05D003226 ORTHO05D005723 2.1e-06 56.6 140 27.9
MBI18_g02834_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D005723 2.8e-06 56.2 137 28.5
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 2.8e-06 56.2 119 38.7
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 2.8e-06 56.2 127 38.6
Sc14g0005870 Simmondsia chinensis HOM05D003226 ORTHO05D005723 2.8e-06 56.2 72 38.9
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 3.7e-06 55.8 127 37.8
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 3.7e-06 55.8 127 37.8
Ca_22432_v3 Cicer arietinum L. HOM05D003226 ORTHO05D005723 3.7e-06 55.8 179 26.3
FAN10G0424 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.7e-06 55.8 119 36.1
Mapoly0005s0174 Marchantia polymorpha HOM05D002696 ORTHO05D003940 3.7e-06 55.8 127 34.6
AagrBONN_evm.TU.Sc2ySwM_344.3408 Anthoceros agrestis HOM05D002696 ORTHO05D003940 4.8e-06 55.5 127 34.6
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 4.8e-06 55.5 127 37.8
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 4.8e-06 55.5 127 37.8
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 4.8e-06 55.5 127 36.2
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 4.8e-06 55.5 127 37.8
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 4.8e-06 55.5 127 36.2
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 6.2e-06 55.1 119 37.8
FAN03G1343 Fragaria x ananassa HOM05D002696 ORTHO05D003940 6.2e-06 55.1 120 37.5
FAN13G2771 Fragaria x ananassa HOM05D003226 ORTHO05D005723 6.2e-06 55.1 143 28.7
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 6.2e-06 55.1 127 37.0
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 6.2e-06 55.1 127 36.2
SalBow1G4412 Salvia bowleyana HOM05D003226 ORTHO05D005723 6.2e-06 55.1 72 37.5
TWI34G0415 Tripterygium wilfordii HOM05D003226 ORTHO05D005723 6.2e-06 55.1 143 28.0
HPP92_013637 Vanilla planifolia HOM05D002696 ORTHO05D003940 6.2e-06 55.1 127 37.0
arahy.Tifrunner.gnm1.ann1.KRWI3G Arachis hypogaea HOM05D004102 ORTHO05D005307 8.1e-06 54.7 182 28.6
Haze_14528 Corylus avellana HOM05D003226 ORTHO05D005723 8.1e-06 54.7 147 27.9
FvH4_7g27644 Fragaria vesca HOM05D002696 ORTHO05D003940 8.1e-06 54.7 124 36.3


User provided reference genes

Program Settings