Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12129 Sequoiadendron giganteum HOM05D003501 ORTHO05D004388 3.7e-88 328.2 163 100.0
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 9.8e-17 90.9 73 56.2
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 2.2e-16 89.7 70 55.7
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.0e-14 83.2 64 59.4
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 2.3e-13 79.7 83 50.6
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 3.0e-13 79.3 64 56.2
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 3.9e-13 79.0 83 50.6
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 3.9e-13 79.0 106 41.5
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 5.0e-13 78.6 68 55.9
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 5.0e-13 78.6 83 49.4
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 5.0e-13 78.6 73 53.4
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 5.0e-13 78.6 73 53.4
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 6.6e-13 78.2 73 53.4
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 8.6e-13 77.8 66 56.1
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 8.6e-13 77.8 66 56.1
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 8.6e-13 77.8 66 56.1
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 8.6e-13 77.8 66 56.1
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.1e-12 77.4 66 56.1
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 1.1e-12 77.4 73 49.3
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 1.1e-12 77.4 66 56.1
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.5e-12 77.0 66 56.1
HPP92_028227 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.5e-12 76.3 64 56.2
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 3.3e-12 75.9 64 54.7
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.3e-12 75.9 64 54.7
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 4.3e-12 75.5 66 50.0
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 4.3e-12 75.5 66 53.0
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 4.3e-12 75.5 66 53.0
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 4.3e-12 75.5 73 49.3
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 4.3e-12 75.5 64 56.2
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 4.3e-12 75.5 109 36.7
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 5.6e-12 75.1 66 53.0
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 5.6e-12 75.1 73 52.1
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 5.6e-12 75.1 65 52.3
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 7.3e-12 74.7 64 51.6
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 7.3e-12 74.7 73 53.4
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 9.5e-12 74.3 66 53.0
Actinidia15651 Actinidia chinensis HOM05D003501 ORTHO05D004388 9.5e-12 74.3 69 50.7
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 9.5e-12 74.3 77 48.1
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 9.5e-12 74.3 66 51.5
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 9.5e-12 74.3 66 51.5
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 9.5e-12 74.3 66 51.5
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 1.2e-11 73.9 66 51.5
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 1.2e-11 73.9 66 53.0
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 1.6e-11 73.6 64 53.1
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 1.6e-11 73.6 66 51.5
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.6e-11 73.6 64 54.7
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 2.1e-11 73.2 66 50.0
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 2.1e-11 73.2 74 51.4
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 2.1e-11 73.2 65 50.8
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 2.1e-11 73.2 66 50.0
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 2.1e-11 73.2 64 53.1
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 2.8e-11 72.8 68 50.0
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 2.8e-11 72.8 66 51.5
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 2.8e-11 72.8 66 51.5
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 2.8e-11 72.8 66 51.5
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 2.8e-11 72.8 66 51.5
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 2.8e-11 72.8 66 51.5
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 2.8e-11 72.8 66 47.0
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 2.8e-11 72.8 64 56.2
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 3.6e-11 72.4 66 50.0
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 3.6e-11 72.4 66 50.0
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 4.7e-11 72.0 66 51.5
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 6.2e-11 71.6 66 50.0
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 6.2e-11 71.6 66 50.0
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 6.2e-11 71.6 66 50.0
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 6.2e-11 71.6 66 50.0
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 6.2e-11 71.6 66 50.0
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 6.2e-11 71.6 66 50.0
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 6.2e-11 71.6 68 48.5
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 6.2e-11 71.6 73 50.7
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 6.2e-11 71.6 64 53.1
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 6.2e-11 71.6 66 50.0
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 6.2e-11 71.6 66 50.0
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 8.0e-11 71.2 64 51.6
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 1.1e-10 70.9 67 47.8
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.1e-10 70.9 64 53.1
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 1.1e-10 70.9 73 49.3
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 1.1e-10 70.9 66 48.5
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.4e-10 70.5 66 47.0
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 1.4e-10 70.5 66 47.0
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 1.4e-10 70.5 66 48.5
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.4e-10 70.5 68 48.5
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 1.8e-10 70.1 66 48.5
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 1.8e-10 70.1 68 48.5
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 1.8e-10 70.1 73 47.9
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 1.8e-10 70.1 73 47.9
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 1.8e-10 70.1 73 47.9
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 2.3e-10 69.7 74 45.9
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 2.3e-10 69.7 68 48.5
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 2.3e-10 69.7 66 48.5
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 2.3e-10 69.7 66 48.5
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 2.3e-10 69.7 66 45.5
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 2.3e-10 69.7 64 53.1
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 3.1e-10 69.3 67 43.3
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 3.1e-10 69.3 65 47.7
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 3.1e-10 69.3 65 47.7
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 3.1e-10 69.3 69 46.4
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 4.0e-10 68.9 66 48.5
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 4.0e-10 68.9 66 47.0
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 5.2e-10 68.6 65 50.8
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 5.2e-10 68.6 73 45.2
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 6.8e-10 68.2 73 46.6
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 6.8e-10 68.2 66 47.0
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 6.8e-10 68.2 66 48.5
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 8.9e-10 67.8 73 45.2
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 8.9e-10 67.8 68 44.1
CAN.G953.12 Capsicum annuum HOM05D003501 ORTHO05D004388 8.9e-10 67.8 73 47.9
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 8.9e-10 67.8 66 45.5
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 8.9e-10 67.8 73 46.6
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 8.9e-10 67.8 61 52.5
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 1.2e-09 67.4 66 45.5
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 1.2e-09 67.4 66 47.0
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 1.2e-09 67.4 64 48.4
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.6e-09 66.2 73 41.1
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 2.6e-09 66.2 67 49.3
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 2.6e-09 66.2 66 47.0
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 2.6e-09 66.2 64 48.4
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 5.8e-09 65.1 68 45.6
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 5.8e-09 65.1 64 48.4
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 7.5e-09 64.7 64 50.0
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 7.5e-09 64.7 65 44.6
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 9.8e-09 64.3 63 46.0
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 9.8e-09 64.3 66 43.9
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 9.8e-09 64.3 66 43.9
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 9.8e-09 64.3 63 47.6
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 1.7e-08 63.5 66 43.9
HPP92_027916 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.7e-08 63.5 83 45.8
Lsat_1_v5_gn_2_70781 Lactuca sativa HOM05D003501 ORTHO05D004388 3.7e-08 62.4 65 49.2
Lsat_1_v5_gn_2_114700 Lactuca sativa HOM05D003501 ORTHO05D004388 4.9e-08 62.0 61 50.8
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.4e-07 60.5 66 43.9
Lsat_1_v5_gn_6_85780 Lactuca sativa HOM05D003501 ORTHO05D004388 1.9e-07 60.1 63 50.8
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 1.9e-07 60.1 63 44.4
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 3.2e-07 59.3 67 43.3
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 5.4e-07 58.5 65 40.0
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.2e-06 57.4 68 42.6
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.2e-06 57.4 84 35.7
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.1e-06 56.6 66 40.9
AL2G16720 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 6.0e-06 55.1 63 38.1


User provided reference genes

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