Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11941 Sequoiadendron giganteum HOM05D001392 ORTHO05D029905 1.3e-39 166.0 85 100.0
MBI11_g24566_MAGBIO Magnolia biondii HOM05D001392 ORTHO05D006407 1.5e-24 115.9 78 69.2
CANSAT71G0007 Cannabis sativa HOM05D001392 ORTHO05D006407 4.8e-23 110.9 77 68.8
CDE10G1341 Ceratophyllum demersum HOM05D001392 ORTHO05D006407 4.8e-23 110.9 78 67.9
ATR0697G119 Amborella trichopoda HOM05D001392 ORTHO05D006407 1.1e-22 109.8 78 69.2
Dinv19030 Davidia involucrata HOM05D001392 ORTHO05D006407 1.8e-22 109.0 78 66.7
Hma1.2p1_0524F.1_g172350 Hydrangea macrophylla HOM05D001392 ORTHO05D006407 1.8e-22 109.0 78 65.4
Lalb_Chr14g0364821 Lupinus albus HOM05D001392 ORTHO05D006407 1.8e-22 109.0 78 65.4
Sc14g0006490 Simmondsia chinensis HOM05D001392 ORTHO05D006407 2.4e-22 108.6 81 65.4
arahy.Tifrunner.gnm1.ann1.0T11RW Arachis hypogaea HOM05D001392 ORTHO05D006407 3.1e-22 108.2 78 64.1
arahy.Tifrunner.gnm1.ann1.XLS2Y4 Arachis hypogaea HOM05D001392 ORTHO05D006407 3.1e-22 108.2 78 64.1
Phvul.004G073700 Phaseolus vulgaris HOM05D001392 ORTHO05D006407 3.1e-22 108.2 78 65.4
Thecc.04G116700 Theobroma cacao HOM05D001392 ORTHO05D006407 3.1e-22 108.2 78 66.7
BraA10t44310Z Brassica rapa HOM05D001392 ORTHO05D006407 5.3e-22 107.5 78 62.8
COL.COLO4_09038 Corchorus olitorius HOM05D001392 ORTHO05D006407 5.3e-22 107.5 78 66.7
Nn7g38289 Nelumbo nucifera HOM05D001392 ORTHO05D006407 5.3e-22 107.5 78 65.4
PGR004G0453 Punica granatum HOM05D001392 ORTHO05D006407 5.3e-22 107.5 78 67.9
TWI74G1301 Tripterygium wilfordii HOM05D001392 ORTHO05D006407 5.3e-22 107.5 78 65.4
VMungo0464G0907 Vigna mungo HOM05D001392 ORTHO05D006407 5.3e-22 107.5 78 65.4
CiPaw.09G167000 Carya illinoinensis HOM05D001392 ORTHO05D006407 6.9e-22 107.1 78 62.8
Manes.02G076200 Manihot esculenta HOM05D001392 ORTHO05D006407 9.0e-22 106.7 78 62.8
Actinidia35731 Actinidia chinensis HOM05D001392 ORTHO05D006407 1.2e-21 106.3 78 65.4
DCAR_003434 Daucus carota HOM05D001392 ORTHO05D006407 1.2e-21 106.3 78 66.7
Duzib133G1570 Durio zibethinus HOM05D001392 ORTHO05D006407 1.2e-21 106.3 78 64.1
THA.LOC104827192 Tarenaya hassleriana HOM05D001392 ORTHO05D006407 1.2e-21 106.3 78 64.1
Haze_20419 Corylus avellana HOM05D001392 ORTHO05D006407 1.5e-21 105.9 78 62.8
ECA246G3910 Erigeron canadensis HOM05D001392 ORTHO05D006407 1.5e-21 105.9 78 67.9
Glyma.17G186800 Glycine max HOM05D001392 ORTHO05D006407 1.5e-21 105.9 78 65.4
unitig_749.g13792 Utricularia gibba HOM05D001392 ORTHO05D006407 1.5e-21 105.9 78 64.1
Atru.chr1.1875 Acer truncatum HOM05D001392 ORTHO05D006407 2.0e-21 105.5 78 66.7
Gorai.011G296000 Gossypium raimondii HOM05D001392 ORTHO05D006407 2.0e-21 105.5 78 64.1
SalBow5G1075 Salvia bowleyana HOM05D001392 ORTHO05D006407 2.0e-21 105.5 78 65.4
BcaC04g18859 Brassica carinata HOM05D001392 ORTHO05D006407 2.6e-21 105.1 78 61.5
A10p22510 Brassica napus HOM05D001392 ORTHO05D006407 2.6e-21 105.1 78 61.5
C09p60360 Brassica napus HOM05D001392 ORTHO05D006407 2.6e-21 105.1 78 61.5
BolC9t58869H Brassica oleracea HOM05D001392 ORTHO05D006407 2.6e-21 105.1 78 61.5
Ca_25679_v3 Cicer arietinum L. HOM05D001392 ORTHO05D006407 2.6e-21 105.1 78 61.5
Eucgr.F02848 Eucalyptus grandis HOM05D001392 ORTHO05D006407 2.6e-21 105.1 78 62.8
Gohir.A10G243050 Gossypium hirsutum HOM05D001392 ORTHO05D006407 2.6e-21 105.1 78 64.1
Lj4A264G50 Lonicera japonica HOM05D001392 ORTHO05D006407 2.6e-21 105.1 78 62.8
Nitab4.5_0003197g0040 Nicotiana tabacum HOM05D001392 ORTHO05D006407 2.6e-21 105.1 78 64.1
QL07p019084 Quercus lobata HOM05D001392 ORTHO05D006407 2.6e-21 105.1 78 62.8
Gohir.D01G222000 Gossypium hirsutum HOM05D001392 ORTHO05D006407 3.4e-21 104.8 78 62.8
Gorai.002G268700 Gossypium raimondii HOM05D001392 ORTHO05D006407 3.4e-21 104.8 78 62.8
PSO339G4038 Papaver somniferum HOM05D001392 ORTHO05D006407 3.4e-21 104.8 78 61.5
Hund13115 Selenicereus undatus HOM05D001392 ORTHO05D006407 3.4e-21 104.8 78 65.4
TAR623G1183 Trochodendron aralioides HOM05D001392 ORTHO05D006407 3.4e-21 104.8 78 62.8
MD05G1034800 Malus domestica HOM05D001392 ORTHO05D006407 4.5e-21 104.4 78 65.4
MD09G1264400 Malus domestica HOM05D001392 ORTHO05D006407 4.5e-21 104.4 78 65.4
Medtr6g027620 Medicago truncatula HOM05D001392 ORTHO05D006407 4.5e-21 104.4 78 64.1
PSO384G0294 Papaver somniferum HOM05D001392 ORTHO05D006407 4.5e-21 104.4 78 61.5
Psat1g089800 Pisum sativum HOM05D001392 ORTHO05D006407 4.5e-21 104.4 78 62.8
AL6G27720 Arabidopsis lyrata HOM05D001392 ORTHO05D006407 5.8e-21 104.0 78 61.5
AT5G16715 Arabidopsis thaliana HOM05D001392 ORTHO05D006407 5.8e-21 104.0 78 61.5
MSTRG.4620 Avicennia marina HOM05D001392 ORTHO05D006407 5.8e-21 104.0 78 62.8
Os07g0163500 Oryza sativa ssp. japonica HOM05D001392 ORTHO05D006407 5.8e-21 104.0 78 61.5
vmacro18535 Vaccinium macrocarpon HOM05D001392 ORTHO05D006407 5.8e-21 104.0 78 64.1
Sed0009589 Sechium edule HOM05D001392 ORTHO05D006407 7.6e-21 103.6 78 62.8
Aqoxy2G00612 Aquilegia oxysepala HOM05D001392 ORTHO05D006407 1.0e-20 103.2 78 64.1
Migut.D01299 Erythranthe guttata HOM05D001392 ORTHO05D006407 1.0e-20 103.2 78 64.1
Gohir.D07G000800 Gossypium hirsutum HOM05D001392 ORTHO05D014312 1.0e-20 103.2 78 61.5
Gorai.N015700 Gossypium raimondii HOM05D001392 ORTHO05D029905 1.0e-20 103.2 84 59.5
Potri.017G124500 Populus trichocarpa HOM05D001392 ORTHO05D006407 1.0e-20 103.2 78 64.1
CSS0004873 Camellia sinensis var. sinensis HOM05D001392 ORTHO05D006407 1.3e-20 102.8 78 64.1
CSS0005968 Camellia sinensis var. sinensis HOM05D001392 ORTHO05D006407 1.3e-20 102.8 78 64.1
Carub.0006s1493 Capsella rubella HOM05D001392 ORTHO05D006407 1.3e-20 102.8 78 60.3
CARHR196470 Cardamine hirsuta HOM05D001392 ORTHO05D006407 1.3e-20 102.8 78 61.5
Cfa017719 Carpinus fangiana HOM05D001392 ORTHO05D006407 1.3e-20 102.8 78 61.5
Solyc12g019110.3 Solanum lycopersicum HOM05D001392 ORTHO05D006407 1.3e-20 102.8 78 62.8
Sopen12g009300 Solanum pennellii HOM05D001392 ORTHO05D006407 1.3e-20 102.8 78 62.8
Ciclev10010998m.g Citrus clementina HOM05D001392 ORTHO05D006407 1.7e-20 102.4 78 64.1
HanXRQChr10g0283681 Helianthus annuus HOM05D001392 ORTHO05D006407 1.7e-20 102.4 78 65.4
Thhalv10012577m.g Eutrema salsugineum HOM05D001392 ORTHO05D006407 2.2e-20 102.1 78 60.3
Sp6g27440 Schrenkiella parvula HOM05D001392 ORTHO05D006407 2.2e-20 102.1 78 60.3
Aa31LG11G12960 Aethionema arabicum HOM05D001392 ORTHO05D006407 2.9e-20 101.7 78 61.5
TPR.G35631 Trifolium pratense HOM05D001392 ORTHO05D006407 2.9e-20 101.7 78 61.5
Cpa.g.sc116.46 Carica papaya HOM05D001392 ORTHO05D006407 3.8e-20 101.3 78 62.8
CsaV3_3G020830 Cucumis sativus L. HOM05D001392 ORTHO05D006407 3.8e-20 101.3 78 62.8
Zm00001eb117220 Zea mays HOM05D001392 ORTHO05D006407 3.8e-20 101.3 78 59.0
FAN03G0802 Fragaria x ananassa HOM05D001392 ORTHO05D006407 4.9e-20 100.9 80 63.8
Gohir.A08G253800 Gossypium hirsutum HOM05D001392 ORTHO05D006407 4.9e-20 100.9 78 61.5
Lsat_1_v5_gn_3_65141 Lactuca sativa HOM05D001392 ORTHO05D006407 4.9e-20 100.9 73 67.1
RcHm_v2.0_Chr1g0328051 Rosa chinensis HOM05D001392 ORTHO05D006407 4.9e-20 100.9 78 64.1
FAN13G1017 Fragaria x ananassa HOM05D001392 ORTHO05D006407 6.5e-20 100.5 80 62.5
Rhsim08G0018500 Rhododendron simsii HOM05D001392 ORTHO05D006407 6.5e-20 100.5 80 65.0
AagrBONN_evm.TU.Sc2ySwM_228.2529 Anthoceros agrestis HOM05D001392 ORTHO05D006407 8.4e-20 100.1 74 62.2
Gorai.008G298700 Gossypium raimondii HOM05D001392 ORTHO05D006407 1.1e-19 99.8 78 61.5
FvH4_7g04130 Fragaria vesca HOM05D001392 ORTHO05D006407 1.9e-19 99.0 78 62.8
GSVIVG01027222001 Vitis vinifera HOM05D001392 ORTHO05D006407 1.9e-19 99.0 78 60.3
GSVIVG01030775001 Vitis vinifera HOM05D001392 ORTHO05D006407 1.9e-19 99.0 78 60.3
Gorai.002G172800 Gossypium raimondii HOM05D001392 ORTHO05D029905 3.2e-19 98.2 78 60.3
CAN.G207.6 Capsicum annuum HOM05D001392 ORTHO05D006407 4.2e-19 97.8 78 59.0
EL10Ac2g03165 Beta vulgaris HOM05D001392 ORTHO05D006407 9.3e-19 96.7 78 59.0
AUR62018211 Chenopodium quinoa HOM05D001392 ORTHO05D006407 9.3e-19 96.7 78 59.0
Pp3c12_13790 Physcomitrium patens HOM05D001392 ORTHO05D006407 9.3e-19 96.7 71 64.8
Gohir.D01G140701 Gossypium hirsutum HOM05D001392 ORTHO05D029905 1.2e-18 96.3 78 60.3
Mapoly0040s0139 Marchantia polymorpha HOM05D001392 ORTHO05D006407 1.2e-18 96.3 78 60.3
Ah.12g060150 Amaranthus hybridus HOM05D001392 ORTHO05D006407 1.0e-17 93.2 78 55.1
Cre07.g350500 Chlamydomonas reinhardtii HOM05D001392 ORTHO05D006407 4.3e-16 87.8 73 54.8
Oeu023509.1 Olea europaea HOM05D001392 ORTHO05D006407 5.7e-16 87.4 71 60.6
MCO14G022 Micromonas commoda HOM05D001392 ORTHO05D006407 4.8e-15 84.3 75 52.0
ClCG05G011510 Citrullus lanatus HOM05D001392 ORTHO05D006407 1.1e-14 83.2 68 60.3
Gohir.A12G276975 Gossypium hirsutum HOM05D001392 ORTHO05D014312 9.0e-14 80.1 58 65.5
AUR62038699 Chenopodium quinoa HOM05D001392 ORTHO05D014312 2.0e-13 79.0 68 55.9
PRCOL_00006335 Prasinoderma coloniale HOM05D001392 ORTHO05D006407 8.5e-12 73.6 79 46.8
Gohir.D12G141700 Gossypium hirsutum HOM05D001392 ORTHO05D048039 5.1e-09 64.3 46 60.9
Gorai.008G153100 Gossypium raimondii HOM05D001392 ORTHO05D048039 5.1e-09 64.3 46 60.9
Gohir.D10G255000 Gossypium hirsutum HOM05D001392 ORTHO05D006407 8.8e-09 63.5 45 62.2
MELO3C020199.2 Cucumis melo HOM05D001392 ORTHO05D006407 1.1e-08 63.2 45 60.0


User provided reference genes

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