Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.2e-211 739.6 372 100.0
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 1.6e-99 367.1 373 56.6
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 1.6e-99 367.1 373 57.9
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 6.2e-99 365.2 371 56.3
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 2.0e-97 360.1 377 54.4
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 4.4e-97 359.0 375 56.8
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 9.8e-97 357.8 375 55.7
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 6.4e-96 355.1 379 54.4
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 6.4e-96 355.1 372 55.6
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 4.1e-95 352.4 377 53.6
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 4.1e-95 352.4 374 55.3
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 2.7e-94 349.7 374 54.5
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 4.6e-94 349.0 371 53.1
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 4.6e-94 349.0 376 53.5
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 7.8e-94 348.2 377 54.4
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 1.0e-93 347.8 371 53.1
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 1.0e-93 347.8 372 53.5
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 2.3e-93 346.7 376 52.9
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 8.6e-93 344.7 373 54.2
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 1.1e-92 344.4 376 53.2
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 1.5e-92 344.0 376 53.2
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 1.9e-92 343.6 375 53.1
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 7.3e-92 341.7 379 53.6
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 7.3e-92 341.7 377 53.6
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 3.6e-91 339.3 375 53.6
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 3.6e-91 339.3 377 53.1
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 3.6e-91 339.3 377 53.1
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 3.6e-91 339.3 379 53.8
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 4.7e-91 339.0 381 51.2
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 8.1e-91 338.2 376 52.4
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 8.1e-91 338.2 375 53.6
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 8.1e-91 338.2 383 51.7
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 1.1e-90 337.8 376 52.9
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 1.4e-90 337.4 379 51.5
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 1.8e-90 337.0 374 50.8
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 2.3e-90 336.7 373 52.3
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 3.1e-90 336.3 371 51.5
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 3.1e-90 336.3 376 52.4
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 3.1e-90 336.3 372 53.0
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 6.8e-90 335.1 377 53.3
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.5e-89 334.0 380 53.4
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 1.5e-89 334.0 375 52.5
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 2.6e-89 333.2 374 51.6
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 3.4e-89 332.8 373 52.5
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 4.4e-89 332.4 371 51.8
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 5.8e-89 332.0 372 52.4
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 7.5e-89 331.6 374 51.6
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 7.5e-89 331.6 379 51.7
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 9.8e-89 331.3 379 51.7
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 9.8e-89 331.3 375 53.1
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 1.3e-88 330.9 374 53.7
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 1.3e-88 330.9 380 51.8
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 1.3e-88 330.9 379 50.7
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.3e-88 330.9 379 51.5
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 1.3e-88 330.9 379 52.8
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 1.3e-88 330.9 375 51.7
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 2.9e-88 329.7 376 52.9
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 2.9e-88 329.7 372 51.9
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 3.7e-88 329.3 373 52.3
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 3.7e-88 329.3 394 49.5
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 6.4e-88 328.6 375 51.2
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 8.3e-88 328.2 377 52.3
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 1.1e-87 327.8 373 52.5
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.4e-87 327.4 381 51.2
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.9e-87 327.0 371 52.6
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 4.1e-87 325.9 381 50.1
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 7.1e-87 325.1 372 50.5
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 1.6e-86 323.9 376 51.3
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 3.5e-86 322.8 378 51.1
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 3.5e-86 322.8 381 51.2
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 3.5e-86 322.8 372 52.7
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 4.6e-86 322.4 374 51.1
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 4.6e-86 322.4 375 51.2
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 4.6e-86 322.4 372 51.1
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 4.6e-86 322.4 374 51.6
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 7.8e-86 321.6 375 50.7
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 1.3e-85 320.9 380 51.6
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 1.7e-85 320.5 410 48.3
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 6.6e-85 318.5 382 50.5
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 1.5e-84 317.4 375 51.5
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 4.3e-84 315.8 372 51.6
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 5.6e-84 315.5 372 51.3
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 7.3e-84 315.1 409 47.7
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 7.3e-84 315.1 378 50.3
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.2e-83 314.3 372 50.5
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 1.2e-83 314.3 374 51.1
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 1.6e-83 313.9 370 51.1
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 2.8e-83 313.2 375 50.4
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 2.8e-83 313.2 382 50.0
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 1.1e-82 311.2 374 49.5
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.4e-82 310.8 371 51.2
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 2.3e-82 310.1 380 50.3
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 1.2e-81 307.8 374 51.3
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 2.0e-81 307.0 393 47.8
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 9.9e-81 304.7 371 51.8
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 1.3e-80 304.3 380 49.5
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 1.9e-79 300.4 373 49.3
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 2.4e-79 300.1 403 46.4
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 2.4e-79 300.1 375 50.1
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 7.1e-79 298.5 375 49.6
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.6e-78 297.4 336 52.7
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.3e-77 294.3 376 47.6
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 3.0e-77 293.1 380 48.7
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 6.6e-77 292.0 380 48.7
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 2.5e-76 290.0 382 48.4
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 2.5e-76 290.0 382 48.4
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 1.2e-75 287.7 374 48.4
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 1.1e-74 284.6 381 48.6
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 1.1e-74 284.6 381 48.6
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 1.1e-74 284.6 381 48.6
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.8e-74 283.9 337 51.3
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 3.1e-74 283.1 378 48.1
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 3.1e-74 283.1 378 48.1
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 1.2e-73 281.2 378 48.1
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 2.0e-73 280.4 383 47.3
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 4.9e-72 275.8 380 47.4
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 4.9e-72 275.8 380 47.4
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 1.1e-71 274.6 379 46.4
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 1.4e-71 274.2 339 48.7
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 4.2e-71 272.7 264 57.6
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 5.4e-71 272.3 367 48.0
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.0e-69 268.1 393 44.8
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 8.7e-69 265.0 335 49.3
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 8.1e-67 258.5 210 64.3
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 5.3e-66 255.8 202 65.8
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 2.2e-64 250.4 210 63.3
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 6.2e-59 232.3 462 37.9
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 1.4e-58 231.1 207 61.8
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 4.6e-54 216.1 307 46.3
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.4e-39 167.9 107 75.7
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 1.9e-36 157.5 193 47.7
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 2.6e-33 147.1 127 56.7
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 3.8e-32 143.3 136 58.8
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 1.3e-27 128.3 217 38.2
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 2.2e-27 127.5 124 54.0
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.2e-25 121.7 99 61.6
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 2.0e-25 120.9 85 70.6
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 2.9e-24 117.1 200 40.0
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 4.7e-22 109.8 73 71.2
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 3.0e-21 107.1 73 69.9
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 1.3e-11 75.1 68 51.5
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 5.3e-10 69.7 67 50.7
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 7.0e-10 69.3 47 61.7
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.0e-09 67.8 62 58.1
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 1.3e-08 65.1 45 66.7
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 2.9e-08 63.9 45 66.7
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 1.1e-07 62.0 45 62.2
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 4.2e-07 60.1 49 57.1


User provided reference genes

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