Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10529 Sequoiadendron giganteum HOM05D004933 ORTHO05D005465 4.8e-52 207.6 108 100.0
Aa31LG3G1370 Aethionema arabicum HOM05D004933 ORTHO05D005465 4.1e-11 71.6 91 51.6
MD01G1169300 Malus domestica HOM05D004933 ORTHO05D005465 5.3e-11 71.2 101 45.5
Gohir.A10G177700 Gossypium hirsutum HOM05D004933 ORTHO05D005465 1.6e-10 69.7 90 48.9
ATR1127G041 Amborella trichopoda HOM05D004933 ORTHO05D005465 2.6e-10 68.9 89 50.6
A04p31150 Brassica napus HOM05D004933 ORTHO05D005465 2.6e-10 68.9 91 45.1
BraA04t18570Z Brassica rapa HOM05D004933 ORTHO05D005465 2.6e-10 68.9 91 44.0
BolC4t28354H Brassica oleracea HOM05D004933 ORTHO05D005465 3.5e-10 68.6 91 45.1
CARHR135870 Cardamine hirsuta HOM05D004933 ORTHO05D005465 3.5e-10 68.6 93 47.3
Gohir.D10G184300 Gossypium hirsutum HOM05D004933 ORTHO05D005465 3.5e-10 68.6 90 48.9
Gorai.011G206500 Gossypium raimondii HOM05D004933 ORTHO05D005465 3.5e-10 68.6 90 48.9
Aqoxy4G03277 Aquilegia oxysepala HOM05D004933 ORTHO05D005465 7.7e-10 67.4 90 46.7
Thecc.10G184900 Theobroma cacao HOM05D004933 ORTHO05D005465 7.7e-10 67.4 85 50.6
TWI09G0099 Tripterygium wilfordii HOM05D004933 ORTHO05D005465 7.7e-10 67.4 92 45.7
TPR.G33913 Trifolium pratense HOM05D004933 ORTHO05D005465 1.0e-09 67.0 89 49.4
Haze_17369 Corylus avellana HOM05D004933 ORTHO05D005465 1.3e-09 66.6 101 39.6
Duzib106G0698 Durio zibethinus HOM05D004933 ORTHO05D005465 1.3e-09 66.6 91 46.2
Sp4g23090 Schrenkiella parvula HOM05D004933 ORTHO05D005465 1.3e-09 66.6 90 46.7
GSVIVG01032657001 Vitis vinifera HOM05D004933 ORTHO05D005465 1.3e-09 66.6 90 48.9
AL4G38660 Arabidopsis lyrata HOM05D004933 ORTHO05D005465 1.7e-09 66.2 90 47.8
C04p68550 Brassica napus HOM05D004933 ORTHO05D005465 1.7e-09 66.2 87 44.8
THA.LOC104824249 Tarenaya hassleriana HOM05D004933 ORTHO05D005465 1.7e-09 66.2 88 46.6
TAR623G0849 Trochodendron aralioides HOM05D004933 ORTHO05D005465 1.7e-09 66.2 88 47.7
AT2G40770 Arabidopsis thaliana HOM05D004933 ORTHO05D005465 2.2e-09 65.9 90 47.8
Carub.0004s2307 Capsella rubella HOM05D004933 ORTHO05D005465 2.2e-09 65.9 90 45.6
Nn2g10269 Nelumbo nucifera HOM05D004933 ORTHO05D005465 2.2e-09 65.9 88 47.7
Potri.019G060900 Populus trichocarpa HOM05D004933 ORTHO05D005465 2.2e-09 65.9 88 46.6
Medtr5g067980 Medicago truncatula HOM05D004933 ORTHO05D005465 2.9e-09 65.5 88 44.3
Prupe.2G265500 Prunus persica HOM05D004933 ORTHO05D005465 2.9e-09 65.5 90 47.8
Potri.019G060300 Populus trichocarpa HOM05D004933 ORTHO05D005465 3.8e-09 65.1 88 45.5
Cfa001196 Carpinus fangiana HOM05D004933 ORTHO05D005465 1.1e-08 63.5 88 44.3
SGA_v2.0_scaffold44G16628 Striga asiatica HOM05D004933 ORTHO05D005465 1.1e-08 63.5 85 47.1
EL10Ac2g02668 Beta vulgaris HOM05D004933 ORTHO05D005465 1.5e-08 63.2 89 46.1
Glyma.02G219200 Glycine max HOM05D004933 ORTHO05D005465 1.5e-08 63.2 87 50.6
PSO170G4230 Papaver somniferum HOM05D004933 ORTHO05D005465 1.5e-08 63.2 95 42.1
Potri.019G060000 Populus trichocarpa HOM05D004933 ORTHO05D005465 1.5e-08 63.2 88 44.3
Potri.019G060126 Populus trichocarpa HOM05D004933 ORTHO05D005465 1.5e-08 63.2 88 44.3
PGR044G2398 Punica granatum HOM05D004933 ORTHO05D005465 1.9e-08 62.8 91 45.1
QL08p065069 Quercus lobata HOM05D004933 ORTHO05D005465 1.9e-08 62.8 88 44.3
Ciclev10030489m.g Citrus clementina HOM05D004933 ORTHO05D005465 2.5e-08 62.4 88 50.0
ECA238G2994 Erigeron canadensis HOM05D004933 ORTHO05D005465 2.5e-08 62.4 85 44.7
Sabra19G0074700 Salix brachista HOM05D004933 ORTHO05D005465 3.2e-08 62.0 88 44.3
RcHm_v2.0_Chr1g0372551 Rosa chinensis HOM05D004933 ORTHO05D005465 4.2e-08 61.6 90 47.8
vmacro06901 Vaccinium macrocarpon HOM05D004933 ORTHO05D005465 4.2e-08 61.6 93 43.0
CANSAT56G0526 Cannabis sativa HOM05D004933 ORTHO05D005465 5.5e-08 61.2 88 48.9
Eucgr.J00103 Eucalyptus grandis HOM05D004933 ORTHO05D005465 5.5e-08 61.2 85 43.5
VMungo0647G0473 Vigna mungo HOM05D004933 ORTHO05D005465 5.5e-08 61.2 85 48.2
Phvul.008G186300 Phaseolus vulgaris HOM05D004933 ORTHO05D005465 7.2e-08 60.8 85 48.2
Rhsim03G0153500 Rhododendron simsii HOM05D004933 ORTHO05D005465 7.2e-08 60.8 92 42.4
Thhalv10016132m.g Eutrema salsugineum HOM05D004933 ORTHO05D005465 9.4e-08 60.5 93 44.1
FAN06G3663 Fragaria x ananassa HOM05D004933 ORTHO05D005465 9.4e-08 60.5 89 49.4
Manes.10G003100 Manihot esculenta HOM05D004933 ORTHO05D005465 9.4e-08 60.5 88 44.3
Oeu064000.1 Olea europaea HOM05D004933 ORTHO05D005465 9.4e-08 60.5 85 43.5
PSO017G2233 Papaver somniferum HOM05D004933 ORTHO05D005465 9.4e-08 60.5 95 41.1
Sopen03g025610 Solanum pennellii HOM05D004933 ORTHO05D005465 9.4e-08 60.5 88 40.9
HanXRQChr14g0460551 Helianthus annuus HOM05D004933 ORTHO05D005465 1.2e-07 60.1 89 44.9
LjContig00408g0012805 Lotus japonicus HOM05D004933 ORTHO05D005465 1.2e-07 60.1 85 47.1
Actinidia13639 Actinidia chinensis HOM05D004933 ORTHO05D005465 1.6e-07 59.7 85 44.7
arahy.Tifrunner.gnm1.ann1.561PLB Arachis hypogaea HOM05D004933 ORTHO05D005465 1.6e-07 59.7 85 45.9
Cpa.g.sc19.41 Carica papaya HOM05D004933 ORTHO05D005465 1.6e-07 59.7 89 41.6
Lalb_Chr17g0344711 Lupinus albus HOM05D004933 ORTHO05D005465 1.6e-07 59.7 85 44.7
Nitab4.5_0000171g0230 Nicotiana tabacum HOM05D004933 ORTHO05D005465 1.6e-07 59.7 85 43.5
Psat2g061800 Pisum sativum HOM05D004933 ORTHO05D005465 1.6e-07 59.7 89 43.8
Solyc03g095690.3 Solanum lycopersicum HOM05D004933 ORTHO05D005465 1.6e-07 59.7 88 40.9
Lsat_1_v5_gn_2_126780 Lactuca sativa HOM05D004933 ORTHO05D005465 3.6e-07 58.5 87 44.8
Nitab4.5_0006356g0010 Nicotiana tabacum HOM05D004933 ORTHO05D005465 3.6e-07 58.5 85 43.5
FvH4_7g26110 Fragaria vesca HOM05D004933 ORTHO05D005465 4.7e-07 58.2 88 51.1
AUR62024946 Chenopodium quinoa HOM05D004933 ORTHO05D005465 6.1e-07 57.8 89 44.9
AUR62030592 Chenopodium quinoa HOM05D004933 ORTHO05D005465 6.1e-07 57.8 89 41.6
Sc11g0006050 Simmondsia chinensis HOM05D004933 ORTHO05D005465 8.0e-07 57.4 85 44.7
Atru.chr12.195 Acer truncatum HOM05D004933 ORTHO05D005465 1.0e-06 57.0 87 43.7
Hma1.2p1_1805F.1_g303180 Hydrangea macrophylla HOM05D004933 ORTHO05D005465 1.0e-06 57.0 88 40.9
Hund13438 Selenicereus undatus HOM05D004933 ORTHO05D005465 1.0e-06 57.0 88 44.3
arahy.Tifrunner.gnm1.ann1.LX8ZS6 Arachis hypogaea HOM05D004933 ORTHO05D005465 1.4e-06 56.6 85 44.7
Lj8C53G7 Lonicera japonica HOM05D004933 ORTHO05D005465 1.8e-06 56.2 90 41.1
Zm00001eb330720 Zea mays HOM05D004933 ORTHO05D005465 1.8e-06 56.2 85 40.0
Cc02_g05220 Coffea canephora HOM05D004933 ORTHO05D005465 2.3e-06 55.8 85 42.4
ClCG11G005620 Citrullus lanatus HOM05D004933 ORTHO05D005465 4.0e-06 55.1 90 42.2
MELO3C020016.2 Cucumis melo HOM05D004933 ORTHO05D005465 6.7e-06 54.3 88 39.8
CsaV3_6G002390 Cucumis sativus L. HOM05D004933 ORTHO05D005465 6.7e-06 54.3 88 39.8
Os07g0680500 Oryza sativa ssp. japonica HOM05D004933 ORTHO05D005465 6.7e-06 54.3 92 38.0
CSS0031284 Camellia sinensis var. sinensis HOM05D004933 ORTHO05D005465 8.8e-06 53.9 92 41.3
Migut.F00567 Erythranthe guttata HOM05D004933 ORTHO05D005465 8.8e-06 53.9 87 42.5


User provided reference genes

Program Settings