Gene: Sopen03g025610
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen03g025610
- Transcript Identifier Sopen03g025610.1
- Gene Type Coding gene
- Location Spenn-ch03 : 59055837-59091662 : positive
Gene Family Information
- ID HOM05D004933
- #Genes/#Species 150/96
- Phylogenetic origin
- ID ORTHO05D005465
- #Genes/#Species 157/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Sopen03g025610.1
Descriptions
- Description zinc ion binding, DNA binding, helicases, ATP binding, nucleic acid binding | FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, PHD-type, conserved site , Zinc finger, PHD-type , SNF2-related , DEAD-like helicase, N-terminal , Zinc finger, FYVE/PHD-type , DNA/RNA helicase, C-terminal , Tetratricopeptide repeat-containing | BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0070615 | IEA | InterPro | nucleosome-dependent ATPase activity |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001841 | Zinc finger, RING-type |
| IPR011011 | Zinc finger, FYVE/PHD-type |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR001650 | Helicase, C-terminal |
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| IPR000330 | SNF2, N-terminal |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR001965 | Zinc finger, PHD-type |
| Mapman id | Description |
|---|---|
| 12.4.8.2.1 | Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.SSO1653-like group.chromatin remodeling factor (SHPRH) |