Gene: AT2G40770

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G40770
  • Transcript Identifier AT2G40770.1
  • Gene Type Coding gene
  • Location Chr2 : 17013535-17021315 : negative

Gene Family Information

  • ID HOM05D004933
  • #Genes/#Species 150/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G40770.1
  • uniprot F4II36

Descriptions

  • Description RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein
  • Computational description zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1); Has 20880 Blast hits to 12947 proteins in 1504 species: Archae - 88; Bacteria - 5732; Metazoa - 4955; Fungi - 5171; Plants - 2134; Viruses - 115; Other Eukaryotes - 2685 (source: NCBI BLink).
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0140658
IEA
Gene OntologyATPase-dependent chromatin remodeler activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR038718 SNF2-like, N-terminal domain superfamily
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR011011 Zinc finger, FYVE/PHD-type
IPR001841 Zinc finger, RING-type
IPR001650 Helicase, C-terminal
IPR001965 Zinc finger, PHD-type
IPR000330 SNF2, N-terminal
Mapman id Description
12.4.8.2.1 Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.SSO1653-like group.chromatin remodeling factor (SHPRH)