Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.9e-254 882.1 464 100.0
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 2.7e-88 330.1 416 45.0
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 3.6e-88 329.7 422 45.3
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 5.0e-82 309.3 439 41.9
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 8.5e-82 308.5 418 43.5
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 1.5e-81 307.8 420 43.3
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.2e-80 304.7 425 43.1
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 8.8e-79 298.5 450 41.3
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 1.2e-78 298.1 413 42.9
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 3.4e-78 296.6 431 42.0
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 3.4e-78 296.6 423 40.9
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 3.7e-77 293.1 413 41.4
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 1.1e-76 291.6 411 43.3
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 3.1e-76 290.0 408 42.9
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 1.2e-75 288.1 405 43.0
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 7.7e-75 285.4 410 43.2
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 1.0e-74 285.0 471 41.2
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 3.8e-74 283.1 406 44.8
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 8.5e-74 282.0 423 43.0
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 8.5e-74 282.0 406 43.1
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 1.9e-73 280.8 472 40.7
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 7.2e-73 278.9 452 38.9
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 7.2e-73 278.9 406 44.6
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 9.5e-73 278.5 404 42.1
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 1.2e-72 278.1 429 39.9
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 1.6e-72 277.7 403 42.2
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 3.6e-72 276.6 450 40.2
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 6.1e-72 275.8 444 41.2
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 1.4e-71 274.6 460 41.1
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 1.4e-71 274.6 406 42.1
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 1.4e-71 274.6 392 43.9
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.8e-71 274.2 406 43.8
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 1.8e-71 274.2 411 40.6
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 2.3e-71 273.9 392 42.9
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 5.2e-71 272.7 468 40.4
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 8.8e-71 271.9 454 40.1
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 8.8e-71 271.9 424 41.0
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 8.8e-71 271.9 420 41.2
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 8.8e-71 271.9 380 43.2
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 1.2e-70 271.6 442 39.1
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 1.2e-70 271.6 452 39.6
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 2.6e-70 270.4 412 42.0
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 2.6e-70 270.4 425 39.8
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.4e-70 269.6 425 40.7
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 4.4e-70 269.6 414 41.5
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 1.3e-69 268.1 411 42.3
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 1.3e-69 268.1 422 41.9
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 2.2e-69 267.3 429 40.8
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 2.2e-69 267.3 442 39.6
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 2.2e-69 267.3 416 43.0
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 5.4e-68 262.7 416 42.1
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 1.6e-67 261.2 375 42.7
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 2.0e-67 260.8 429 40.3
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 3.5e-67 260.0 426 39.4
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 7.7e-67 258.8 394 40.4
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 1.0e-66 258.5 380 42.4
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 1.0e-66 258.5 448 39.5
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 1.7e-66 257.7 413 40.9
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 1.7e-66 257.7 426 39.9
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 2.3e-66 257.3 429 38.7
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.9e-66 256.9 367 43.9
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 5.0e-66 256.1 427 40.3
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 6.6e-66 255.8 429 38.5
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 8.6e-66 255.4 416 41.3
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 7.3e-65 252.3 425 38.6
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 9.5e-65 251.9 426 39.4
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 1.2e-64 251.5 469 37.5
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 1.6e-64 251.1 431 39.7
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 2.8e-64 250.4 256 51.6
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 6.1e-64 249.2 437 37.5
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.8e-63 247.7 408 41.7
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 2.3e-63 247.3 413 41.2
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 8.9e-63 245.4 425 40.0
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 1.2e-62 245.0 261 49.4
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 1.5e-62 244.6 432 39.8
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.0e-62 244.2 393 41.2
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 4.4e-62 243.0 424 39.2
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 7.5e-62 242.3 405 40.2
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.7e-61 241.1 406 40.4
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 6.4e-61 239.2 264 48.1
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 1.8e-60 237.7 392 38.5
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 1.8e-60 237.7 384 37.8
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 2.4e-60 237.3 368 42.4
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 2.4e-60 237.3 479 36.3
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 1.6e-59 234.6 226 51.8
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 2.7e-59 233.8 451 35.0
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 5.9e-59 232.6 392 40.1
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 1.3e-58 231.5 396 39.6
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 6.6e-58 229.2 380 38.7
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 6.6e-58 229.2 380 38.7
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 8.6e-58 228.8 456 37.1
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 1.9e-57 227.6 395 40.0
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 1.4e-55 221.5 439 39.2
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 1.4e-55 221.5 387 38.5
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 1.6e-51 208.0 427 36.5
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 7.8e-51 205.7 280 42.1
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 1.7e-50 204.5 447 35.3
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 3.3e-49 200.3 442 34.6
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 2.8e-48 197.2 436 34.9
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 8.1e-48 195.7 463 33.9
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 8.1e-48 195.7 280 42.5
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.8e-47 194.5 236 44.1
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 5.2e-47 193.0 406 36.2
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 5.2e-47 193.0 406 36.2
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 1.5e-46 191.4 410 35.4
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 2.6e-46 190.7 419 33.9
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 2.6e-46 190.7 406 36.0
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 4.4e-46 189.9 453 34.7
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 7.5e-46 189.1 412 36.2
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 7.5e-46 189.1 412 36.2
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 2.9e-45 187.2 394 34.3
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 3.7e-45 186.8 413 34.4
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 4.9e-45 186.4 421 34.7
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 6.4e-45 186.0 445 35.3
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 1.2e-43 181.8 426 33.1
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 2.7e-43 180.6 431 32.9
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 3.5e-43 180.3 462 32.7
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 6.0e-43 179.5 386 34.2
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 1.9e-41 174.5 465 32.5
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 2.9e-37 160.6 363 36.6
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.4e-36 157.5 249 38.6
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 9.3e-28 129.0 465 29.5
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.4e-20 104.4 238 32.8
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 9.6e-17 92.4 256 32.8
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 1.6e-16 91.7 194 32.5
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 1.4e-12 78.6 80 48.8
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 5.5e-12 76.6 167 30.5
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.5e-09 68.6 34 100.0


User provided reference genes

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